mRNA_L-elsbetiae_contig15812.4047.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15812.4047.1
Unique NamemRNA_L-elsbetiae_contig15812.4047.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15812.4047.1 vs. uniprot
Match: D7FZF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF5_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.250e-48
Identity = 104/145 (71.72%), Postives = 120/145 (82.76%), Query Frame = 2 
Query:    2 PAAREATQYLGDVMGQQSWEARAFGVRASALLAERFPTEKACLLCRTALHVLSTMCDSEARAPRG-LGALAAGAASSLSXXXXXXQGTGSNNSGQAPAATALLACGRPPTGLVRETFTFAINICQAFPSLMSDAVGLMEAILQKQ 433
            PA+R  T++LGDVMGQQSWEARAFGV+ASALLAERFPTE+ACLLC+ ALHVLS+MCDSEA+APRG L ALAAG+A    XXXXXX          AP+ TALLACG PP+GLVRETF+FA+NICQAFPSL  D V L+E+IL+KQ
Sbjct:  353 PASRGTTRHLGDVMGQQSWEARAFGVQASALLAERFPTEEACLLCKGALHVLSSMCDSEAQAPRGTLNALAAGSAXXXXXXXXXXXXXXXXX---APS-TALLACGMPPSGLVRETFSFAVNICQAFPSLKGDTVSLIESILKKQ 493
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BLAST of mRNA_L-elsbetiae_contig15812.4047.1 vs. uniprot
Match: A0A6H5KM27_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM27_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.690e-26
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 2 
Query:    2 PAAREATQYLGDVMGQQSWEARAFGVRASALLAERFPTEKACLLCRTALHVLSTMCDSEARAPRG-LGALAAGAAS 226
            PA+R AT++LGDVM QQSWEARAFGV+ASALLAERFPTE+ACLLC+ ALHVLS+MCDSEA+APRG L ALAAG+ S
Sbjct:  366 PASRGATRHLGDVMAQQSWEARAFGVQASALLAERFPTEEACLLCKGALHVLSSMCDSEAQAPRGTLNALAAGSVS 441
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15812.4047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZF5_ECTSI2.250e-4871.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM27_9PHAE1.690e-2680.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15812contigL-elsbetiae_contig15812:392..3175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size634
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15812.4047.1prot_L-elsbetiae_contig15812.4047.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15812 432..3133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.7532415-UTR-L-elsbetiae_contig15812:391..4311622815649.7532415-UTR-L-elsbetiae_contig15812:391..431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15812 392..431 +
1691683014.1737628-UTR-L-elsbetiae_contig15812:391..4311691683014.1737628-UTR-L-elsbetiae_contig15812:391..431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15812 392..431 +
1622815649.8232353-UTR-L-elsbetiae_contig15812:3133..31751622815649.8232353-UTR-L-elsbetiae_contig15812:3133..3175Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15812 3134..3175 +
1691683014.223537-UTR-L-elsbetiae_contig15812:3133..31751691683014.223537-UTR-L-elsbetiae_contig15812:3133..3175Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15812 3134..3175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.7690396-CDS-L-elsbetiae_contig15812:431..5121622815649.7690396-CDS-L-elsbetiae_contig15812:431..512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15812 432..512 +
1691683014.1838892-CDS-L-elsbetiae_contig15812:431..5121691683014.1838892-CDS-L-elsbetiae_contig15812:431..512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15812 432..512 +
1622815649.7824876-CDS-L-elsbetiae_contig15812:1137..13891622815649.7824876-CDS-L-elsbetiae_contig15812:1137..1389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15812 1138..1389 +
1691683014.1917274-CDS-L-elsbetiae_contig15812:1137..13891691683014.1917274-CDS-L-elsbetiae_contig15812:1137..1389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15812 1138..1389 +
1622815649.7972584-CDS-L-elsbetiae_contig15812:2499..25591622815649.7972584-CDS-L-elsbetiae_contig15812:2499..2559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15812 2500..2559 +
1691683014.2001257-CDS-L-elsbetiae_contig15812:2499..25591691683014.2001257-CDS-L-elsbetiae_contig15812:2499..2559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15812 2500..2559 +
1622815649.8106377-CDS-L-elsbetiae_contig15812:2974..31331622815649.8106377-CDS-L-elsbetiae_contig15812:2974..3133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15812 2975..3133 +
1691683014.211081-CDS-L-elsbetiae_contig15812:2974..31331691683014.211081-CDS-L-elsbetiae_contig15812:2974..3133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15812 2975..3133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15812.4047.1

>prot_L-elsbetiae_contig15812.4047.1 ID=prot_L-elsbetiae_contig15812.4047.1|Name=mRNA_L-elsbetiae_contig15812.4047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
MGQQSWEARAFGVRASALLAERFPTEKACLLCRTALHVLSTMCDSEARAP
RGLGALAAGAASSLSSAGTAGQGTGSNNSGQAPAATALLACGRPPTGLVR
ETFTFAINICQAFPSLMSDAVGLMEAILQKQDLAKIHGAKGAEKLRKRIS
KTLAAIKSPEDEIAGAGAWPLSAQSAAKRPRLT*
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mRNA from alignment at L-elsbetiae_contig15812:392..3175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15812.4047.1 ID=mRNA_L-elsbetiae_contig15812.4047.1|Name=mRNA_L-elsbetiae_contig15812.4047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2784bp|location=Sequence derived from alignment at L-elsbetiae_contig15812:392..3175+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTGCTGCCAGGGAAGCGACGCAGTACCTGGGGGACGTGATGGGGCAGC
AGTCGTGGGAGGCCAGGGCGTTCGGGGTGCGGGCGTCGGCCCTGCTGGCG
GAGAGATTCCCCACGGAAAAGGTGATCGGTCTATTGATTGGTTTGTTTGT
TGGGTCGACAAGTAGTGGTCCGTTCCGCGTTCGGGGCGCGCGGGCGTCGG
GCCTGCTGGCCGACAGGTTCACCAAAAGAAAAAAAGTGACTGTTTTTTTT
GTTTTTTTTGTTTACTCTCTCCTCTCCATGGGTGGCCACGCATCCGCTGG
TTGGTCGCTGCTGCCGCTTCGACCACCCGAATGTCCCTGTTGCCGTTTCT
GTTTTGCCTGCTGCGCTGCATGCATAAATGCATGCATACCTCTACATAAT
AGGTGGGCTCTACCCCGCTGGAAAATTGTTGGCCGACCTCGCAAATCTAA
TTCTCTGCAGGGGAGATGTTGAATTCTTCTGATGTTTAGGTTGTTTTTCT
GCTCGCTTCGCCGAATATTACGTCTCTGTACGGAATACCGTTTGAACCCC
ATATCGAGTCTTTGCTCTAGTATGGGTTAGGTTCCATCTTTGATTCTTTG
TTTCATTTTTAAGTAGACACATCGCCGTCGTGGGCCTTTTCCATGTACGG
CGGGCGGGCGGCGGGCGGGCGGGGCGCGCGCTCTGTTTTTTTGTGTTATT
TTTCTTTTTTCGAAACCGTTTTCGACCGCGTCGTGGTCGCCGGCAGGCGT
GTCTCCTCTGCCGGACGGCCCTCCACGTCCTGAGCACCATGTGCGACTCG
GAGGCGAGGGCGCCGAGAGGGCTGGGCGCACTCGCCGCCGGGGCGGCTTC
ATCGCTGTCGTCGGCGGGGACAGCGGGGCAGGGAACCGGCAGCAACAATA
GCGGCCAGGCCCCGGCCGCCACTGCTCTCCTCGCGTGCGGGAGGCCGCCC
ACCGGGCTGGTGAGGGAGACCTTTACCTTCGCGATAAATATTTGCCAGGT
ATGTGTGTGTGTGTATTTTTTTTGTTTTTTTTTGTATGTGTTTCTGTTTT
TTGTTTTTTGTTTTTTGTTTTTGTTTTTTGTTTCCATTACTGGCTTATTC
GTCGTCTGCCTCACTGACCCCCTTCCTTCATTACGAGTACATAGCTAGAC
GACCCAACCGGGGTAAATGTGTGCGTGTATGTATGTATGTGTAGATGAAA
ACAGGCCCCCTAGGTCTAGACGGTATTAGTCTTAGCTGTGCGGTGTAGGT
ACAGAGTGAGCATTTGTAGGTACGTGCATACATGTTGGAGTCTGTGGTTT
GTTTGTGTGTGTGTTTGTTTGCTGATCGGTTTTTGGCAGGAGATATATCG
ACCTCGGAGTGTTCGTAAATGCTCGAATGCATGCAACGAGCGATCTGCGT
ACGCTGTGTGACGCCTTTTTGACCTTTTGTTTCGCGAAGAGAAGGGTCAC
AGAAACGGGCAACGGGCGGTCCTGTGTGGGGAGACACGTGTACCTTGTGC
GGCACCCTTTCCCCTCGGCGTGCTGTTGACGACGTTTCCGGGGTGAGGTT
GGAGTTCCTGGTGCTGTTGTGAACTACATAGCTCGGCATTGTCGGAGATG
TTCACACACCTTTGGCGCGTTTCCCCCTCGACCCGCGGCTTCGCGGTGGG
TGCCTGGGTGCGCGGGGTTGGAAGCTGCCATGGTGTGGTGCTCGGGCCAC
TGGGGGCAACGAGCAATGAGTGCGCTTGCCTTTCCGGCCTGTCGGACAAC
TTTTTTATTCACGCTCGTGGAGAAAAGCGATCATTCTGTTGGTGCGCAGC
CGCACGAAGCACCCAAGCCTGCGAGAATGCCGCCGCAAGCGGGCAGCGGA
GAGAGAGTTGAGCCGGCGACGTTCCGCCTATTTTGGTCCGCTGTTCGCGT
CGTTAGATGCAAGCGCAGAGCTCGTTGGCCAGTGGACCCCGAGAAAAACA
AACGGAGCCCTCAAAGAGTAGCTTCCGAGACAACGTTCACGGCCATGAAA
ATAAAACCCATATATCAACTGTTGCAGAAATCCCCCCGCCCTCGTTGCGC
GCACCCATTGGTTGCCGTTGGCGTTCTTGCGTGTGTTTTTTGTCGCCTCT
GGGTGCAGGCGTTCCCTTCCCTTATGAGCGACGCGGTCGGCCTGATGGAG
GCAATCTTGCAGAAGCAGGTGGGTGGGCATGTAGGCAGGAAAGGGGGGAC
CGGGGAGTATGGCACCCCTGCCGCGTGCGACCGGAGGCTGTGTTGCCGGT
TGATCCTTGATCAGACGTGCTGTCACCCACGTAAAACATTTTTTTTTTTT
TTTTTGTGTCGTCGTGAGCCGGTCTCTCTTTCGGCCATCATGAGGGTTTC
AGCTGTCTGCTATCTGCTTGATTGACAGCCCTTGTGCTATATCTATCTAG
CTAGCTTTTGAGGTTTTCGTTAAGCTCGAAAAAGAAAAGTGCTACATAAA
AGCTGTTGGAACGAAACGCAGCGCGCAGTTATTTTCGTTGCCTACTATGT
ATAATGGACCGCCCCGGTCACAACGTGCTCCCGCTCTCCCCGTCGACGGT
GCGCTCTGCGGTCCCTCGCTGGCGCGTATGTAGGACCTTGCGAAGATACA
CGGGGCAAAGGGCGCGGAGAAGCTAAGGAAACGGATCTCCAAGACTCTGG
CCGCCATCAAGTCGCCAGAGGACGAGATCGCCGGCGCCGGTGCGTGGCCG
CTCTCGGCTCAGTCGGCGGCCAAGAGGCCGAGATTGACATGATGCACACA
GACGGCCGTCTCAACTGTTGCAGAAATCGTACTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15812:392..3175+

>mRNA_L-elsbetiae_contig15812.4047.1 ID=mRNA_L-elsbetiae_contig15812.4047.1|Name=mRNA_L-elsbetiae_contig15812.4047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig15812:392..3175+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCAGCAGTCGTGGGAGGCCAGGGCGTTCGGGGTGCGGGCGTCGGC
CCTGCTGGCGGAGAGATTCCCCACGGAAAAGATGGGGCAGCAGTCGTGGG
AGGCCAGGGCGTTCGGGGTGCGGGCGTCGGCCCTGCTGGCGGAGAGATTC
CCCACGGAAAAGGCGTGTCTCCTCTGCCGGACGGCCCTCCACGTCCTGAG
CACCATGTGCGACTCGGAGGCGAGGGCGCCGAGAGGGCTGGGCGCACTCG
CCGCCGGGGCGGCTTCATCGCTGTCGTCGGCGGGGACAGCGGGGCAGGGA
ACCGGCAGCAACAATAGCGGCCAGGCCCCGGCCGCCACTGCTCTCCTCGC
GTGCGGGAGGCCGCCCACCGGGCTGGTGAGGGAGACCTTTACCTTCGCGA
TAAATATTTGCCAGGCGTGTCTCCTCTGCCGGACGGCCCTCCACGTCCTG
AGCACCATGTGCGACTCGGAGGCGAGGGCGCCGAGAGGGCTGGGCGCACT
CGCCGCCGGGGCGGCTTCATCGCTGTCGTCGGCGGGGACAGCGGGGCAGG
GAACCGGCAGCAACAATAGCGGCCAGGCCCCGGCCGCCACTGCTCTCCTC
GCGTGCGGGAGGCCGCCCACCGGGCTGGTGAGGGAGACCTTTACCTTCGC
GATAAATATTTGCCAGGCGTTCCCTTCCCTTATGAGCGACGCGGTCGGCC
TGATGGAGGCAATCTTGCAGAAGCAGGCGTTCCCTTCCCTTATGAGCGAC
GCGGTCGGCCTGATGGAGGCAATCTTGCAGAAGCAGGACCTTGCGAAGAT
ACACGGGGCAAAGGGCGCGGAGAAGCTAAGGAAACGGATCTCCAAGACTC
TGGCCGCCATCAAGTCGCCAGAGGACGAGATCGCCGGCGCCGGTGCGTGG
CCGCTCTCGGCTCAGTCGGCGGCCAAGAGGCCGAGATTGACATGAGACCT
TGCGAAGATACACGGGGCAAAGGGCGCGGAGAAGCTAAGGAAACGGATCT
CCAAGACTCTGGCCGCCATCAAGTCGCCAGAGGACGAGATCGCCGGCGCC
GGTGCGTGGCCGCTCTCGGCTCAGTCGGCGGCCAAGAGGCCGAGATTGAC
ATGA
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