prot_L-elsbetiae_contig1580.4042.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1580.4042.1
Unique Nameprot_L-elsbetiae_contig1580.4042.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length108
Homology
BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: D8LSD4_ECTSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD4_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 3.100e-43
Identity = 71/90 (78.89%), Postives = 78/90 (86.67%), Query Frame = 0
Query:    8 RDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINS 97
            R++RLPGKDIASPEVFPFGTPYRDI D LK KDEA F +NNLL L ARN+ +KAAPQRFQ++EGPDMADFDVVLCFE RVFY VVEG  S
Sbjct:  138 REVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEGTCS 227          
BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 2.150e-41
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 0
Query:    8 RDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINS 97
            R++RLPGKDIASPEVFPFGTPYRDI D LK KDEA F +NNLL L ARN+ +KAAPQRFQ++EGPDMADFDVVLCFE RVFY VVE + S
Sbjct:  234 REVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEDLQS 323          
BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: A0A6H5JLZ3_9PHAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 8.800e-27
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 0
Query:    8 RDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGIN 96
            R++RLPGKD  SP+ FPFGTPY +I D L R++EA F RN++L L  RN+T K AP+R+Q ++G  +A FDVV+CFE+RVF  VVE + 
Sbjct:   20 REVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGGHVASFDVVVCFESRVFDLVVEDLQ 108          
BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: D8LTB5_ECTSI (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB5_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.150e-26
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 0
Query:    8 RDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGI 95
            R++RLPGKD  SP+ FPFGTPY +I D L R++EA F RN++L L  RN+T K AP+R+Q ++G  +A FDVV+CFE+RVF  VVEGI
Sbjct:  176 REVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEGI 263          
BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: J3N6B8_ORYBR (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Oryza TaxID=4527 RepID=J3N6B8_ORYBR)

HSP 1 Score: 97.8 bits (242), Expect = 1.600e-23
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 0
Query:    1 VSFLVVSRDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINS 97
            V+F      ++LPG  +  P ++PFGTPY+ IHD L+RKD   + RN LL +  RNS +KA PQR+QD  G     FDVVL FE +VF SV+E +NS
Sbjct:   36 VAFYGTGAHVKLPGPSLLDPNLYPFGTPYKAIHDDLRRKDPDLYKRNGLLPMLKRNSAVKATPQRWQDNAGD--GPFDVVLTFEEKVFDSVLEDLNS 130          
BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: UPI00077618CA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI00077618CA)

HSP 1 Score: 97.8 bits (242), Expect = 1.720e-23
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 0
Query:    1 VSFLVVSRDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINS 97
            V+F      ++LPG  +  P ++PFGTPY+ IHD L+RKD   + RN LL +  RNS +KA PQR+QD  G     FDVVL FE +VF SV+E +NS
Sbjct:   36 VAFYGTGAHVKLPGPSLLDPNLYPFGTPYKAIHDDLRRKDPDLYKRNGLLPMLKRNSAVKATPQRWQDNAGD--GPFDVVLTFEEKVFDSVLEDLNS 130          
BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: A0A8J6BIY5_ZIZPA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J6BIY5_ZIZPA)

HSP 1 Score: 94.0 bits (232), Expect = 9.060e-22
Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 0
Query:    1 VSFLVVSRDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINS 97
            VS       ++LPG  I  P V+ FGTPY+ IHD L+RKD   + RN LL +  RNST+KA PQR+Q+  G     FDVVL FE +VF  VVE +NS
Sbjct:   34 VSSYGTGAHVKLPGPSIHEPNVYAFGTPYKTIHDDLRRKDPDLYKRNGLLPMLKRNSTVKAVPQRWQENAGD--GPFDVVLTFEEKVFDLVVEDLNS 128          
BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: UPI001FB17BB1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB17BB1)

HSP 1 Score: 89.4 bits (220), Expect = 5.160e-20
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 0
Query:   10 LRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQD--VEGPDMADFDVVLCFEARVFYSVVEGINS 97
            ++LPG  +  P V+ FGTPY+ + D L+RKD   + RN +L +  RNST+K APQR+QD   +GP    FDVVL FE +VF +V+E +N+
Sbjct:   39 VKLPGPSLREPNVYDFGTPYKQMFDDLRRKDSELYKRNGILPMLKRNSTVKLAPQRWQDNAADGP----FDVVLTFEEKVFDNVIEDMNN 124          
BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: UPI00053A3199 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A3199)

HSP 1 Score: 88.2 bits (217), Expect = 9.160e-20
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:   10 LRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGIN----SCTTFTSCF 105
            ++LPG  +  P V+ FGTPY+ + D L+RKD   + RN +L++  RN ++K APQR+QD  G  +  FDVV+ FE +VF SV+EG      S T F +CF
Sbjct:   39 VKLPGPSLREPNVYDFGTPYKQMFDELRRKDPELYKRNGILQMLKRNLSVKLAPQRWQDNAGDGV--FDVVMTFEEKVFDSVLEGNTTSSLSDTLFQNCF 136          
BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: UPI000539A3F4 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000539A3F4)

HSP 1 Score: 87.0 bits (214), Expect = 1.330e-19
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 0
Query:   10 LRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINSCTTFT 102
            ++LPG  +  P V+ FGTPY+ + D L+RKD   + RN +L++  RN ++K APQR+QD  G  +  FDVV+ FE +VF SV+EGI     FT
Sbjct:   39 VKLPGPSLREPNVYDFGTPYKQMFDELRRKDPELYKRNGILQMLKRNLSVKLAPQRWQDNAGDGV--FDVVMTFEEKVFDSVLEGILHPPHFT 129          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSD4_ECTSI3.100e-4378.89RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5KZG9_9PHAE2.150e-4177.78Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
A0A6H5JLZ3_9PHAE8.800e-2756.18RNA polymerase II subunit A C-terminal domain phos... [more]
D8LTB5_ECTSI3.150e-2659.09Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
J3N6B8_ORYBR1.600e-2349.48RNA polymerase II subunit A C-terminal domain phos... [more]
UPI00077618CA1.720e-2349.48RNA polymerase II subunit A C-terminal domain phos... [more]
A0A8J6BIY5_ZIZPA9.060e-2250.52RNA polymerase II subunit A C-terminal domain phos... [more]
UPI001FB17BB15.160e-2047.78RNA polymerase II subunit A C-terminal domain phos... [more]
UPI00053A31999.160e-2045.00RNA polymerase II subunit A C-terminal domain phos... [more]
UPI000539A3F41.330e-1946.24RNA polymerase II subunit A C-terminal domain phos... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.2300coord: 41..104
e-value: 6.5E-7
score: 31.1
NoneNo IPR availablePANTHERPTHR20383:SF9RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE SSU72coord: 8..97
IPR006811RNA polymerase II subunit APFAMPF04722Ssu72coord: 9..97
e-value: 1.3E-24
score: 86.8
IPR006811RNA polymerase II subunit APANTHERPTHR20383FAMILY NOT NAMEDcoord: 8..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1580contigL-elsbetiae_contig1580:17797..18120 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1580.4042.1mRNA_L-elsbetiae_contig1580.4042.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1580 17797..18120 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1580.4042.1 ID=prot_L-elsbetiae_contig1580.4042.1|Name=mRNA_L-elsbetiae_contig1580.4042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
VSFLVVSRDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLL
KLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINSCTT
FTSCFTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006811RNA_pol_II_suA