mRNA_L-elsbetiae_contig1580.4042.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1580.4042.1
Unique NamemRNA_L-elsbetiae_contig1580.4042.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: D8LSD4_ECTSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD4_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 3.100e-43
Identity = 71/90 (78.89%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:   22 RDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINS 291
            R++RLPGKDIASPEVFPFGTPYRDI D LK KDEA F +NNLL L ARN+ +KAAPQRFQ++EGPDMADFDVVLCFE RVFY VVEG  S
Sbjct:  138 REVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEGTCS 227
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BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 2.150e-41
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:   22 RDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINS 291
            R++RLPGKDIASPEVFPFGTPYRDI D LK KDEA F +NNLL L ARN+ +KAAPQRFQ++EGPDMADFDVVLCFE RVFY VVE + S
Sbjct:  234 REVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEDLQS 323
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BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: A0A6H5JLZ3_9PHAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 8.800e-27
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:   22 RDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGIN 288
            R++RLPGKD  SP+ FPFGTPY +I D L R++EA F RN++L L  RN+T K AP+R+Q ++G  +A FDVV+CFE+RVF  VVE + 
Sbjct:   20 REVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGGHVASFDVVVCFESRVFDLVVEDLQ 108
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BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: D8LTB5_ECTSI (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB5_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.150e-26
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:   22 RDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGI 285
            R++RLPGKD  SP+ FPFGTPY +I D L R++EA F RN++L L  RN+T K AP+R+Q ++G  +A FDVV+CFE+RVF  VVEGI
Sbjct:  176 REVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEGI 263
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BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: J3N6B8_ORYBR (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Oryza TaxID=4527 RepID=J3N6B8_ORYBR)

HSP 1 Score: 97.8 bits (242), Expect = 1.600e-23
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 VSFLVVSRDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINS 291
            V+F      ++LPG  +  P ++PFGTPY+ IHD L+RKD   + RN LL +  RNS +KA PQR+QD  G     FDVVL FE +VF SV+E +NS
Sbjct:   36 VAFYGTGAHVKLPGPSLLDPNLYPFGTPYKAIHDDLRRKDPDLYKRNGLLPMLKRNSAVKATPQRWQDNAGD--GPFDVVLTFEEKVFDSVLEDLNS 130
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BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: UPI00077618CA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI00077618CA)

HSP 1 Score: 97.8 bits (242), Expect = 1.720e-23
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 VSFLVVSRDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINS 291
            V+F      ++LPG  +  P ++PFGTPY+ IHD L+RKD   + RN LL +  RNS +KA PQR+QD  G     FDVVL FE +VF SV+E +NS
Sbjct:   36 VAFYGTGAHVKLPGPSLLDPNLYPFGTPYKAIHDDLRRKDPDLYKRNGLLPMLKRNSAVKATPQRWQDNAGD--GPFDVVLTFEEKVFDSVLEDLNS 130
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BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: A0A8J6BIY5_ZIZPA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J6BIY5_ZIZPA)

HSP 1 Score: 94.0 bits (232), Expect = 9.060e-22
Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 VSFLVVSRDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINS 291
            VS       ++LPG  I  P V+ FGTPY+ IHD L+RKD   + RN LL +  RNST+KA PQR+Q+  G     FDVVL FE +VF  VVE +NS
Sbjct:   34 VSSYGTGAHVKLPGPSIHEPNVYAFGTPYKTIHDDLRRKDPDLYKRNGLLPMLKRNSTVKAVPQRWQENAGD--GPFDVVLTFEEKVFDLVVEDLNS 128
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BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: UPI001FB17BB1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB17BB1)

HSP 1 Score: 89.4 bits (220), Expect = 5.160e-20
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:   28 LRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQD--VEGPDMADFDVVLCFEARVFYSVVEGINS 291
            ++LPG  +  P V+ FGTPY+ + D L+RKD   + RN +L +  RNST+K APQR+QD   +GP    FDVVL FE +VF +V+E +N+
Sbjct:   39 VKLPGPSLREPNVYDFGTPYKQMFDDLRRKDSELYKRNGILPMLKRNSTVKLAPQRWQDNAADGP----FDVVLTFEEKVFDNVIEDMNN 124
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BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: UPI00053A3199 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A3199)

HSP 1 Score: 88.2 bits (217), Expect = 9.160e-20
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:   28 LRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGIN----SCTTFTSCF 315
            ++LPG  +  P V+ FGTPY+ + D L+RKD   + RN +L++  RN ++K APQR+QD  G  +  FDVV+ FE +VF SV+EG      S T F +CF
Sbjct:   39 VKLPGPSLREPNVYDFGTPYKQMFDELRRKDPELYKRNGILQMLKRNLSVKLAPQRWQDNAGDGV--FDVVMTFEEKVFDSVLEGNTTSSLSDTLFQNCF 136
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BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Match: UPI000539A3F4 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000539A3F4)

HSP 1 Score: 87.0 bits (214), Expect = 1.330e-19
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   28 LRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLLKLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINSCTTFT 306
            ++LPG  +  P V+ FGTPY+ + D L+RKD   + RN +L++  RN ++K APQR+QD  G  +  FDVV+ FE +VF SV+EGI     FT
Sbjct:   39 VKLPGPSLREPNVYDFGTPYKQMFDELRRKDPELYKRNGILQMLKRNLSVKLAPQRWQDNAGDGV--FDVVMTFEEKVFDSVLEGILHPPHFT 129
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1580.4042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSD4_ECTSI3.100e-4378.89RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5KZG9_9PHAE2.150e-4177.78Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
A0A6H5JLZ3_9PHAE8.800e-2756.18RNA polymerase II subunit A C-terminal domain phos... [more]
D8LTB5_ECTSI3.150e-2659.09Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
J3N6B8_ORYBR1.600e-2349.48RNA polymerase II subunit A C-terminal domain phos... [more]
UPI00077618CA1.720e-2349.48RNA polymerase II subunit A C-terminal domain phos... [more]
A0A8J6BIY5_ZIZPA9.060e-2250.52RNA polymerase II subunit A C-terminal domain phos... [more]
UPI001FB17BB15.160e-2047.78RNA polymerase II subunit A C-terminal domain phos... [more]
UPI00053A31999.160e-2045.00RNA polymerase II subunit A C-terminal domain phos... [more]
UPI000539A3F41.330e-1946.24RNA polymerase II subunit A C-terminal domain phos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1580contigL-elsbetiae_contig1580:17797..18120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue4.2e-34
Seed eggNOG ortholog2880.D8LSD4
Preferred nameSSU72
KEGG koko:K15544
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0001173,GO:0001174,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005847,GO:0005849,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006368,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008420,GO:0009058,GO:0009059,GO:0009302,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010564,GO:0010639,GO:0010948,GO:0016070,GO:0016071,GO:0016074,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0023052,GO:0030846,GO:0030847,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043244,GO:0043412,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045786,GO:0045839,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0060623,GO:0065007,GO:0070013,GO:0070940,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902340,GO:1903379,GO:1903506,GO:1905213,GO:2000112,GO:2001141,GO:2001251
EggNOG free text desc.RNA polymerase II subunit A C-terminal domain phosphatase
EggNOG OGsCOG5211@1,KOG2424@2759
EC3.1.3.16
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021
Ec32 ortholog descriptionPhosphotyrosine protein phosphatase I superfamily
Ec32 orthologEc-21_003270.1
Exons1
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.352635-CDS-L-elsbetiae_contig1580:17796..181201622815649.352635-CDS-L-elsbetiae_contig1580:17796..18120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1580 17797..18120 -
1691683013.9265084-CDS-L-elsbetiae_contig1580:17796..181201691683013.9265084-CDS-L-elsbetiae_contig1580:17796..18120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1580 17797..18120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1580.4042.1prot_L-elsbetiae_contig1580.4042.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1580 17797..18120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1580.4042.1

>prot_L-elsbetiae_contig1580.4042.1 ID=prot_L-elsbetiae_contig1580.4042.1|Name=mRNA_L-elsbetiae_contig1580.4042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
VSFLVVSRDLRLPGKDIASPEVFPFGTPYRDIHDTLKRKDEAFFLRNNLL
KLAARNSTIKAAPQRFQDVEGPDMADFDVVLCFEARVFYSVVEGINSCTT
FTSCFTR*
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mRNA from alignment at L-elsbetiae_contig1580:17797..18120-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1580.4042.1 ID=mRNA_L-elsbetiae_contig1580.4042.1|Name=mRNA_L-elsbetiae_contig1580.4042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig1580:17797..18120- (Laminarionema elsbetiae ELsaHSoW15)
GTCTCTTTTTTGGTGGTCTCAAGGGACTTGCGGCTACCTGGCAAGGACAT
CGCCAGCCCGGAGGTGTTTCCTTTTGGAACGCCCTACCGGGACATCCACG
ACACGCTGAAGCGCAAAGACGAGGCGTTCTTCCTCAGGAACAACCTGCTG
AAGCTGGCGGCCCGTAACTCCACGATCAAAGCCGCACCGCAGCGGTTTCA
GGATGTCGAGGGCCCGGACATGGCGGATTTCGACGTGGTGCTGTGCTTCG
AAGCAAGGGTGTTTTACTCGGTCGTTGAAGGTATAAATTCATGCACAACC
TTCACCAGCTGTTTCACCAGATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1580:17797..18120-

>mRNA_L-elsbetiae_contig1580.4042.1 ID=mRNA_L-elsbetiae_contig1580.4042.1|Name=mRNA_L-elsbetiae_contig1580.4042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig1580:17797..18120- (Laminarionema elsbetiae ELsaHSoW15)
GTCTCTTTTTTGGTGGTCTCAAGGGACTTGCGGCTACCTGGCAAGGACAT
CGCCAGCCCGGAGGTGTTTCCTTTTGGAACGCCCTACCGGGACATCCACG
ACACGCTGAAGCGCAAAGACGAGGCGTTCTTCCTCAGGAACAACCTGCTG
AAGCTGGCGGCCCGTAACTCCACGATCAAAGCCGCACCGCAGCGGTTTCA
GGATGTCGAGGGCCCGGACATGGCGGATTTCGACGTGGTGCTGTGCTTCG
AAGCAAGGGTGTTTTACTCGGTCGTTGAAGGTATAAATTCATGCACAACC
TTCACCAGCTGTTTCACCAGATAGGTCTCTTTTTTGGTGGTCTCAAGGGA
CTTGCGGCTACCTGGCAAGGACATCGCCAGCCCGGAGGTGTTTCCTTTTG
GAACGCCCTACCGGGACATCCACGACACGCTGAAGCGCAAAGACGAGGCG
TTCTTCCTCAGGAACAACCTGCTGAAGCTGGCGGCCCGTAACTCCACGAT
CAAAGCCGCACCGCAGCGGTTTCAGGATGTCGAGGGCCCGGACATGGCGG
ATTTCGACGTGGTGCTGTGCTTCGAAGCAAGGGTGTTTTACTCGGTCGTT
GAAGGTATAAATTCATGCACAACCTTCACCAGCTGTTTCACCAGATAG
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