mRNA_L-elsbetiae_contig15786.4031.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15786.4031.1
Unique NamemRNA_L-elsbetiae_contig15786.4031.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15786.4031.1 vs. uniprot
Match: A0A6C0JA70_9ZZZZ (DUF4338 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JA70_9ZZZZ)

HSP 1 Score: 73.6 bits (179), Expect = 4.600e-13
Identity = 35/82 (42.68%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   55 NFKEQARRRNIAVSISFDEYSSIVRTACWYCGDFTYKGYSGVDRMQNTGTYQQGNVVASCKTCNFMKGSLSVNEFLGKVKDI 300
            N+K+ + +RNI  +IS  EY +I+   C YCG F  +G +G+DR+ +   Y+ GN+V  CKTCN +KG+L++ +F  K+K+I
Sbjct:  364 NYKKSSAKRNIKFNISETEYINILTYPCKYCGCFN-QGANGIDRVHSELPYEIGNIVPCCKTCNSLKGTLTLLQFKQKLKNI 444          
BLAST of mRNA_L-elsbetiae_contig15786.4031.1 vs. uniprot
Match: A0A6C0B6K3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0B6K3_9ZZZZ)

HSP 1 Score: 63.2 bits (152), Expect = 1.970e-9
Identity = 30/93 (32.26%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   31 VVASCKTCNFKEQARRRNI---AVSISFDEYSSIVRTACWYCGDFTYKGYSGVDRMQNTGTYQQGNVVASCKTCNFMKGSLSVNEFLGKVKDI 300
            V A+ +    K+  +R  I    + ++ +++ SI +  C+YCG    KG++G+DRM +T  Y+  N V+ C  CN MKG++    F+ +V+ I
Sbjct:  231 VKANPEKVALKDLNKRNRIYGGGIDLTIEQFESITKQPCYYCGIIQDKGFNGIDRMDSTKGYEIDNCVSCCTECNMMKGAVDNITFIQRVEHI 323          
BLAST of mRNA_L-elsbetiae_contig15786.4031.1 vs. uniprot
Match: A0A0F9UB66_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9UB66_9ZZZZ)

HSP 1 Score: 57.0 bits (136), Expect = 9.800e-8
Identity = 31/93 (33.33%), Postives = 47/93 (50.54%), Query Frame = 1
Query:   58 FKEQARRRNIAVSISFDEYSSIVRTACWYCG-----DFTYKG------YSGVDRMQNTGTYQQGNVVASCKTCNFMKGSLSVNEFLGKVKDIA 303
            ++ QA+ R +  S+S   +  +V  +C YCG         KG      YSG+DR+     Y   N V  CKTCN+ KG++++ EF   +  IA
Sbjct:   89 YRHQAKTRGLGFSLSKKHFRELVTNSCHYCGIPPSNSVKKKGSNGEFVYSGIDRVATKYGYSVKNCVPCCKTCNWAKGTMNLEEFKSWITRIA 181          
BLAST of mRNA_L-elsbetiae_contig15786.4031.1 vs. uniprot
Match: A0A6H5JE23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE23_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.890e-7
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = -2
Query:  207 SLAMSLTFPKNSLTESDPFMKLQVLQDATTLPCW 308
            SLAMSLTFPKN  TE DPF+KLQVLQ+ATTL  W
Sbjct:   71 SLAMSLTFPKNFFTERDPFIKLQVLQEATTLSFW 104          
BLAST of mRNA_L-elsbetiae_contig15786.4031.1 vs. uniprot
Match: A0A1Y1IIP2_KLENI (Uncharacterized protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IIP2_KLENI)

HSP 1 Score: 53.9 bits (128), Expect = 3.540e-6
Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   58 FKEQARRRNIAVSISFDEYSSIVRTACWYCG---DFTYKGYSGVDRMQNTGTYQQGNVVASCKTCNFMKGSLSVNEFLGKVKDIA 303
            ++E+A R+ +   ++   +  IV  +C+ CG   D T +  +G+DR+ NT  Y +GN+ A C  CN MK    ++EF  +V  IA
Sbjct:  463 YRERAFRKGLEFGLTTRRFLEIVAESCYICGNVGDGTRR--NGIDRVDNTKGYVEGNMRACCGECNSMKKKADIDEFRARVDLIA 545          
BLAST of mRNA_L-elsbetiae_contig15786.4031.1 vs. uniprot
Match: A0A0B5J5M8_9VIRU (Uncharacterized protein n=1 Tax=Pandoravirus inopinatum TaxID=1605721 RepID=A0A0B5J5M8_9VIRU)

HSP 1 Score: 53.1 bits (126), Expect = 6.210e-6
Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   58 FKEQARRRNIAVSISFDEYSSIV-RTACWYCGDFTYKGYS-GVDRMQNTGTYQQGNVVASCKTCNFMKGSLSVNEFLGKVKDI 300
            ++ QA+R   A +I+ +++ S+    AC YCG       + G+DR  NT  Y+  N  A C  CN+MK S++++ F+ K + +
Sbjct:  161 YRTQAKRAGRAFTITREQFDSMFFAAACSYCGTARVDPQTLGIDRFDNTVGYEPENCRACCAACNYMKSSMTMDNFVKKCRTV 243          
BLAST of mRNA_L-elsbetiae_contig15786.4031.1 vs. uniprot
Match: A7RC33_PBCVA (Uncharacterized protein C580L n=3 Tax=Chlorovirus TaxID=181083 RepID=A7RC33_PBCVA)

HSP 1 Score: 52.8 bits (125), Expect = 8.020e-6
Identity = 30/93 (32.26%), Postives = 46/93 (49.46%), Query Frame = 1
Query:   28 HVVASCKTCNFKEQARRRNIAVSISFDEYSSIVRTACWYCGDFTYKGY-SGVDRMQNTGTYQQGNVVASCKTCNFMKGSLSVNEFLGKVKDIA 303
            H     K  + ++ A RRNI   ++ D   +     C+YCG  T     +G+DR+ NT  Y +GN V+ C TCN MK  L    F+ +   ++
Sbjct:   92 HATIYRKYQHIRDGALRRNIQFDLTKDFIGTETDKDCFYCGQQTTDTLRNGIDRLNNTVGYIEGNCVSCCWTCNNMKQCLDALTFVERCSQVS 184          
BLAST of mRNA_L-elsbetiae_contig15786.4031.1 vs. uniprot
Match: A0A317HAF4_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A317HAF4_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 1.610e-5
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   58 FKEQARRRNIAVSISFDEYSSIVRTA-CWYCG-DFTYKGYSGVDRMQNTGTYQQGNVVASCKTCN 246
            FK +A++R IA+ +S++E+ +IV  A C YCG + T KG S +DR  ++  Y + NVV  C  CN
Sbjct:   50 FKSKAKKRGIALELSYEEWIAIVNGAPCHYCGHEITSKG-SSLDRKNSSLGYTKDNVVPCCVPCN 113          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15786.4031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6C0JA70_9ZZZZ4.600e-1342.68DUF4338 domain-containing protein n=1 Tax=viral me... [more]
A0A6C0B6K3_9ZZZZ1.970e-932.26Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A0F9UB66_9ZZZZ9.800e-833.33Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A6H5JE23_9PHAE2.890e-779.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1IIP2_KLENI3.540e-634.12Uncharacterized protein (Fragment) n=1 Tax=Klebsor... [more]
A0A0B5J5M8_9VIRU6.210e-632.53Uncharacterized protein n=1 Tax=Pandoravirus inopi... [more]
A7RC33_PBCVA8.020e-632.26Uncharacterized protein C580L n=3 Tax=Chlorovirus ... [more]
A0A317HAF4_9BACT1.610e-543.08Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15786contigL-elsbetiae_contig15786:2058..2366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.2902884-CDS-L-elsbetiae_contig15786:2057..23661622815648.2902884-CDS-L-elsbetiae_contig15786:2057..2366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15786 2058..2366 -
1691683013.1994755-CDS-L-elsbetiae_contig15786:2057..23661691683013.1994755-CDS-L-elsbetiae_contig15786:2057..2366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15786 2058..2366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15786.4031.1prot_L-elsbetiae_contig15786.4031.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15786 2058..2366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15786.4031.1

>prot_L-elsbetiae_contig15786.4031.1 ID=prot_L-elsbetiae_contig15786.4031.1|Name=mRNA_L-elsbetiae_contig15786.4031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MKLEGKRSCHVVASCKTCNFKEQARRRNIAVSISFDEYSSIVRTACWYCG
DFTYKGYSGVDRMQNTGTYQQGNVVASCKTCNFMKGSLSVNEFLGKVKDI
ARE
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mRNA from alignment at L-elsbetiae_contig15786:2058..2366-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15786.4031.1 ID=mRNA_L-elsbetiae_contig15786.4031.1|Name=mRNA_L-elsbetiae_contig15786.4031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=309bp|location=Sequence derived from alignment at L-elsbetiae_contig15786:2058..2366- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCTTGAAGGAAAACGGTCCTGCCACGTTGTGGCATCCTGTAAGAC TTGCAATTTCAAGGAGCAAGCTCGGAGACGCAATATTGCGGTGTCGATAA GCTTTGACGAGTACAGCAGCATCGTGCGCACCGCATGCTGGTACTGTGGC GACTTTACATATAAGGGGTATTCAGGCGTAGACCGCATGCAGAACACGGG CACGTACCAGCAAGGCAACGTTGTGGCATCCTGTAAGACTTGCAATTTCA TGAAAGGATCACTTTCGGTCAACGAATTCTTGGGAAAGGTCAAAGACATT GCAAGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15786:2058..2366-

>mRNA_L-elsbetiae_contig15786.4031.1 ID=mRNA_L-elsbetiae_contig15786.4031.1|Name=mRNA_L-elsbetiae_contig15786.4031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig15786:2058..2366- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCTTGAAGGAAAACGGTCCTGCCACGTTGTGGCATCCTGTAAGAC
TTGCAATTTCAAGGAGCAAGCTCGGAGACGCAATATTGCGGTGTCGATAA
GCTTTGACGAGTACAGCAGCATCGTGCGCACCGCATGCTGGTACTGTGGC
GACTTTACATATAAGGGGTATTCAGGCGTAGACCGCATGCAGAACACGGG
CACGTACCAGCAAGGCAACGTTGTGGCATCCTGTAAGACTTGCAATTTCA
TGAAAGGATCACTTTCGGTCAACGAATTCTTGGGAAAGGTCAAAGACATT
GCAAGAGAGATGAAGCTTGAAGGAAAACGGTCCTGCCACGTTGTGGCATC
CTGTAAGACTTGCAATTTCAAGGAGCAAGCTCGGAGACGCAATATTGCGG
TGTCGATAAGCTTTGACGAGTACAGCAGCATCGTGCGCACCGCATGCTGG
TACTGTGGCGACTTTACATATAAGGGGTATTCAGGCGTAGACCGCATGCA
GAACACGGGCACGTACCAGCAAGGCAACGTTGTGGCATCCTGTAAGACTT
GCAATTTCATGAAAGGATCACTTTCGGTCAACGAATTCTTGGGAAAGGTC
AAAGACATTGCAAGAGAG
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