mRNA_L-elsbetiae_contig10391.403.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10391.403.1
Unique NamemRNA_L-elsbetiae_contig10391.403.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10391.403.1 vs. uniprot
Match: D7G875_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G875_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.900e-51
Identity = 89/171 (52.05%), Postives = 120/171 (70.18%), Query Frame = 1 
Query:   13 SIEGAWVLDLSRSETMHRYLEISGVPAKGIEAHVIAERSHGGLNLIQLDQDSLTIYKQTYANNFTESFVIGEEKSTHDSATGTWKSSVVSIITSDPSGYVQSTRGTLSLGG-NEAHTREARYVTEGGLSHVQEINLRNLVTGQDCVTTRVWQRVLMTHEHRATLALLTVSQ 522
            SI GAWVLDLSRS+TM R+L+++ V  +G  AHV AE  HG  N+I L+ D++TI+++T ANNFTESF + EEK  +D    T  S +VS+ +S P+GYV+S   T   GG ++ H  E+R++ EG LSH QEI L NL TG+ CVT RVW RV MT EH+AT+ LL +++
Sbjct:   11 SIVGAWVLDLSRSDTMERFLQVTRVSEQGTRAHVRAEARHGAFNVIHLEGDTITIHRRTCANNFTESFKLDEEKVKYDGIVRTRISELVSMPSSGPTGYVRSANSTAISGGRDDVHMLESRHIMEGSLSHTQEIRLHNLTTGEHCVTNRVWTRVPMTDEHQATIGLLLLAE 181
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BLAST of mRNA_L-elsbetiae_contig10391.403.1 vs. uniprot
Match: D7G874_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G874_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 5.740e-46
Identity = 85/167 (50.90%), Postives = 112/167 (67.07%), Query Frame = 1 
Query:   13 SIEGAWVLDLSRSETMHRYLEISGVPAKGIEAHVIAERSHGGLNLIQLDQDSLTIYKQTYANNFTE-SFVIGEEKSTHDSATGTWKSSVVSIITSDPSGYVQSTRGTLSLGGNEAHTREARYVTEGGLSHVQEINLRNLVTGQDCVTTRVWQRVLMTHEHRATLALL 510
            SI GAWVLDLSRS+TM  +L I G+P K I  HV AE  HGG N++ L +D++TI+K+T  N +TE S+ + EEK  ++  T T  S V+S+  S P+G+V+S   + + G +  H  E R+V EGGL+H QEI L NL TG+DCVT RVW RV MT EH+A L  L
Sbjct:  117 SIVGAWVLDLSRSDTMELFLRIHGMPEKHIREHVSAETLHGGFNVVGLGEDTITIHKRTCTNCYTERSYTLDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSANCSTAGGRDNVHMLETRHVVEGGLAHTQEIRLHNLTTGEDCVTNRVWMRVPMTEEHQAALGPL 283
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BLAST of mRNA_L-elsbetiae_contig10391.403.1 vs. uniprot
Match: D7G8E6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8E6_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 4.970e-41
Identity = 83/156 (53.21%), Postives = 103/156 (66.03%), Query Frame = 1 
Query:   58 MHRYLEISGVPAKGIEAHVIAERSHGG-LNLIQLDQDSLTIYKQTYANNFTESFVIGEEKSTHDSATGTWKSSVVSIITSDPSGYVQSTRGTLSLGGNEAHTR--EARYVTEGGLSHVQEINLRNLVTGQDCVTTRVWQRVLMTHEHRATLALLTV 516
            M RYLE+SG+PA     HV+AER HGG LNLI LD+ +LTI+K+TY NN+TE+FV+GEEK T  +      S+ VS + S   GYV   R T S    + +T   E RYV  GGL H+QEI  R L TG++C   R W+RV+MTHEHRATL LL V
Sbjct:    1 MQRYLEVSGMPATHAYTHVLAERKHGGALNLIHLDETTLTIHKRTYRNNYTETFVLGEEKVTSVTPNRVSISTTVSNLGSSSRGYVCLIRNT-STPERQHNTEVLERRYVANGGLCHIQEIKARCLTTGEECGIVRTWRRVMMTHEHRATLGLLLV 155
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BLAST of mRNA_L-elsbetiae_contig10391.403.1 vs. uniprot
Match: A0A6H5JV86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV86_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.940e-39
Identity = 74/138 (53.62%), Postives = 96/138 (69.57%), Query Frame = 1 
Query:  112 VIAERSHGGLNLIQLDQDSLTIYKQTYANNFTESFVIGEEKSTHDSATGTWKSSVVSIITSDPSGYVQSTRGTLSLGG-NEAHTREARYVTEGGLSHVQEINLRNLVTGQDCVTTRVWQRVLMTHEHRATLALLTVSQ 522
            V AE  HG  N+I L+ D++TI+K+T ANNFTESF +GEEK  HD    T  S VVS+ +S P+GYV+S R T   GG ++ H  E+R++ EGGLSH QEI L NL TG+ CVT RVW RV MT EH+A + LL +++
Sbjct:    4 VRAEARHGAFNVIHLEGDTITIHKRTCANNFTESFKLGEEKVKHDGILRTRISEVVSMPSSRPTGYVRSARSTAVSGGRDDVHMLESRHIMEGGLSHTQEIRLHNLTTGEHCVTNRVWTRVPMTDEHQAMMGLLLLAE 141
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BLAST of mRNA_L-elsbetiae_contig10391.403.1 vs. uniprot
Match: D7FQR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR1_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 6.250e-20
Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 1 
Query:   13 SIEGAWVLDLSRSETMHRYLEISGVPAKGIEAHVIAERSHGGLNLIQLDQDSLTIYKQTYANNFTESFVIGEEKSTHDSATGTWKSSVVSIITSDPS---GYVQSTRGTLSLGGNEAHTREARYVTEGGLSHVQEINLRNLVTGQDCVTTRVWQRVLMT 480
            SI GAWVL++SRSETM  YL    V    IEA + AE+ H   N+  ++   L I+K+T  N+FT+ + + +EK T D  +G  K  +VS+   +P    G V +T    + G  + H  E R + + G  H QE++L NL TG  CVT R W RV +T
Sbjct:   23 SIVGAWVLEVSRSETMEGYLRCMNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKIT-DGRSGP-KHCMVSLP--NPGCLDGLVLTTSMPTAQG--QMHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVT 175
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10391.403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G875_ECTSI1.900e-5152.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G874_ECTSI5.740e-4650.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8E6_ECTSI4.970e-4153.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JV86_9PHAE2.940e-3953.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQR1_ECTSI6.250e-2039.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10391contigL-elsbetiae_contig10391:1167..3070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size534
Cds size534
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10391.403.1prot_L-elsbetiae_contig10391.403.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10391 1167..3070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.0725236-CDS-L-elsbetiae_contig10391:1166..12951622815265.0725236-CDS-L-elsbetiae_contig10391:1166..1295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10391 1167..1295 -
1691682805.0900462-CDS-L-elsbetiae_contig10391:1166..12951691682805.0900462-CDS-L-elsbetiae_contig10391:1166..1295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10391 1167..1295 -
1622815265.08504-CDS-L-elsbetiae_contig10391:1495..16881622815265.08504-CDS-L-elsbetiae_contig10391:1495..1688Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10391 1496..1688 -
1691682805.102572-CDS-L-elsbetiae_contig10391:1495..16881691682805.102572-CDS-L-elsbetiae_contig10391:1495..1688Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10391 1496..1688 -
1622815265.0939565-CDS-L-elsbetiae_contig10391:2254..23551622815265.0939565-CDS-L-elsbetiae_contig10391:2254..2355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10391 2255..2355 -
1691682805.112216-CDS-L-elsbetiae_contig10391:2254..23551691682805.112216-CDS-L-elsbetiae_contig10391:2254..2355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10391 2255..2355 -
1622815265.1043217-CDS-L-elsbetiae_contig10391:2623..26871622815265.1043217-CDS-L-elsbetiae_contig10391:2623..2687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10391 2624..2687 -
1691682805.1230779-CDS-L-elsbetiae_contig10391:2623..26871691682805.1230779-CDS-L-elsbetiae_contig10391:2623..2687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10391 2624..2687 -
1622815265.1181386-CDS-L-elsbetiae_contig10391:3023..30701622815265.1181386-CDS-L-elsbetiae_contig10391:3023..3070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10391 3024..3070 -
1691682805.1363647-CDS-L-elsbetiae_contig10391:3023..30701691682805.1363647-CDS-L-elsbetiae_contig10391:3023..3070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10391 3024..3070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10391.403.1

>prot_L-elsbetiae_contig10391.403.1 ID=prot_L-elsbetiae_contig10391.403.1|Name=mRNA_L-elsbetiae_contig10391.403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
EHAPSIEGAWVLDLSRSETMHRYLEISGVPAKGIEAHVIAERSHGGLNLI
QLDQDSLTIYKQTYANNFTESFVIGEEKSTHDSATGTWKSSVVSIITSDP
SGYVQSTRGTLSLGGNEAHTREARYVTEGGLSHVQEINLRNLVTGQDCVT
TRVWQRVLMTHEHRATLALLTVSQPAR*
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mRNA from alignment at L-elsbetiae_contig10391:1167..3070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10391.403.1 ID=mRNA_L-elsbetiae_contig10391.403.1|Name=mRNA_L-elsbetiae_contig10391.403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1904bp|location=Sequence derived from alignment at L-elsbetiae_contig10391:1167..3070- (Laminarionema elsbetiae ELsaHSoW15)
GAGCACGCTCCCTCCATCGAAGGCGCTTGGGTGCTTGACCTCTCCAGGTG
CACATTTTTTTCGTCAAGTTCATCTCTACCAGCAAATGTTGTCCAGCCTC
GCCCATCAGCTCTCCTCCCTCTCTCTCTTGTTACAAATGTTTCGTGCATA
CAGAGCTCTCTATTTTCGTCCGGCGCTTTTTCAATATTTTACCTCTCACC
TCTTACTCTCTGTGCGCCCTGCCCTGGGTGCTGCTACCTCCCTAGTTCGT
GTACTGTTTTTTCTTTTTCACAGTAAATAGTCGATCCAACGGTGGCAATT
GAGCGTTTCCGGTAGACAATCAACCAATGCATTACTTAATTCAGGAAATA
AAACCGACCTTTTGTCACCACCGAATGTGATAGGTCGGAGACCATGCATC
GCTACCTCGAAATCAGCGGCGTACCGGCCAAGGGCATCGAAGCGCATGTG
AGCAAAAATCACAAGTAATCGAAACACGCGACAGCTCTGCCGAAGACAAC
GAACGGTATTAGAACTCAAGCATGCTCTTTTTCAGCACGCATCAGCATGT
TCTCCGTCGATACCCTCCTTCATTTGCCAAGGGGTGGGTTGCCTTTGGGG
GGAGATATGGAAGTATTGCTGTCGGACGATAGACACAATTTACACGATAC
TGTTGAGCGTGTGTGGAATACAACGTAATGCCGTGCTTCTGGTGATTGTT
TTGGGGCTGGTTCAGGTGATAGCCGAGAGGAGCCACGGGGGGCTCAACCT
CATCCAGTTGGACCAGGACTCTCTCACCATCTACAAGCAGACTTACGCGA
ACAATTTTACGGAGAGGTGAGAAGATCGGTGCTTGTGCGCCTTTCCTTTG
ATGCTTGGTGCTTTGCTCGTGACGCACACGGAGTGAGGGCATCTCGGCAG
CGGCAGCGGCAGCGGCAGCTAAAAGACCGTTAATGCCAGTCCGCCCCGGC
CTATCGATTTCGAGCTCAACTCCGAGGTCGACTATTCTAGCCGTGCCGAG
CATGTCCTACTTTCACCCCTTCCTTGCCGAAAAAAGTACAAGCCCAAAGG
GTATCAAGCAATAAACAGCGGTTCGGATTTATTCGGTAATTATTGAGTGG
GTACCCCGATTCTGTTTGATTCTGACCAACCTATCTTCCCACGATCACGC
TAGTCTACCTTTTCCAAAGATACACCCCGAGCAGAACAACAACCAAAGAT
TGTCTGCGTCGTTTCCATTCCGTTCCTCGGTAACATCTCTCACCCCGCTA
GTAAGGCACTAAACCGGGGCAAACAAGCAAAGCCTCTCGGTAATGCATCC
ATCGGCGCGTTGACTTCATCCTTGGCGTGCGTGAAAATGGCCACTCTCTC
TCCCCCTGTATCTATTCGATTCCTCTCTACAGTTTTGTGATCGGCGAGGA
GAAATCCACGCACGACAGCGCCACCGGGACCTGGAAGTCATCGGTTGTTT
CCATAATCACCTCTGATCCGAGTGGGTATGTTCAGTCGACCCGGGGCACC
CTGTCCTTAGGAGGAAATGAAGCCCACACGCGAGAGGCGCGCTACGTCAC
CGAAGGTGGCTTGTCCCACGTTCAGGTGGGTTGGCTGGTTGGTTTGGAGT
TGTGAGAGGTCGGGTTATCAAGATGAAGTGTATTTTCGTTGCTAGCACCT
CGTCTAGTCTAGTATAATTTCTCAACAATACCGTCACAACAGCCGCCGCC
AACACCACTACCACTGAACAGTGACACAGTTACTCACTGCCCCGCCGTCT
CTCTATAACAATGCGCTGCGTCCAGGAGATAAACCTCCGCAACCTTGTTA
CCGGGCAGGACTGCGTGACCACCAGAGTCTGGCAACGCGTGCTGATGACT
CACGAACACCGGGCGACCCTTGCGCTCCTAACCGTGTCTCAGCCCGCTCG
TTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10391:1167..3070-

>mRNA_L-elsbetiae_contig10391.403.1 ID=mRNA_L-elsbetiae_contig10391.403.1|Name=mRNA_L-elsbetiae_contig10391.403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig10391:1167..3070- (Laminarionema elsbetiae ELsaHSoW15)
GAGCACGCTCCCTCCATCGAAGGCGCTTGGGTGCTTGACCTCTCCAGGAG
CACGCTCCCTCCATCGAAGGCGCTTGGGTGCTTGACCTCTCCAGGTCGGA
GACCATGCATCGCTACCTCGAAATCAGCGGCGTACCGGCCAAGGGCATCG
AAGCGCATGTCGGAGACCATGCATCGCTACCTCGAAATCAGCGGCGTACC
GGCCAAGGGCATCGAAGCGCATGTGATAGCCGAGAGGAGCCACGGGGGGC
TCAACCTCATCCAGTTGGACCAGGACTCTCTCACCATCTACAAGCAGACT
TACGCGAACAATTTTACGGAGAGGTGATAGCCGAGAGGAGCCACGGGGGG
CTCAACCTCATCCAGTTGGACCAGGACTCTCTCACCATCTACAAGCAGAC
TTACGCGAACAATTTTACGGAGAGTTTTGTGATCGGCGAGGAGAAATCCA
CGCACGACAGCGCCACCGGGACCTGGAAGTCATCGGTTGTTTCCATAATC
ACCTCTGATCCGAGTGGGTATGTTCAGTCGACCCGGGGCACCCTGTCCTT
AGGAGGAAATGAAGCCCACACGCGAGAGGCGCGCTACGTCACCGAAGGTG
GCTTGTCCCACGTTCAGTTTTGTGATCGGCGAGGAGAAATCCACGCACGA
CAGCGCCACCGGGACCTGGAAGTCATCGGTTGTTTCCATAATCACCTCTG
ATCCGAGTGGGTATGTTCAGTCGACCCGGGGCACCCTGTCCTTAGGAGGA
AATGAAGCCCACACGCGAGAGGCGCGCTACGTCACCGAAGGTGGCTTGTC
CCACGTTCAGGAGATAAACCTCCGCAACCTTGTTACCGGGCAGGACTGCG
TGACCACCAGAGTCTGGCAACGCGTGCTGATGACTCACGAACACCGGGCG
ACCCTTGCGCTCCTAACCGTGTCTCAGCCCGCTCGTTAGGAGATAAACCT
CCGCAACCTTGTTACCGGGCAGGACTGCGTGACCACCAGAGTCTGGCAAC
GCGTGCTGATGACTCACGAACACCGGGCGACCCTTGCGCTCCTAACCGTG
TCTCAGCCCGCTCGTTAG
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