mRNA_L-elsbetiae_contig15777.4026.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15777.4026.1
Unique NamemRNA_L-elsbetiae_contig15777.4026.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15777.4026.1 vs. uniprot
Match: A0A6H5KXU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXU2_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 5.550e-39
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    1 GTSGATMEPRRGTLCAALFDDGGGPAWYRAKVLGSTPVGLRVRYVDHGNTATVKASSLRPLDSSYFAFRPQAR 219
            GTSGATMEPRRGTLCAALFDDG GPAWYRAKVLGSTPVG+RV YVDHGNTATVK+SSLRPLDSSYFAFRPQAR
Sbjct:  750 GTSGATMEPRRGTLCAALFDDGNGPAWYRAKVLGSTPVGMRVLYVDHGNTATVKSSSLRPLDSSYFAFRPQAR 822
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BLAST of mRNA_L-elsbetiae_contig15777.4026.1 vs. uniprot
Match: A0A2P4YKI6_9STRA (Nuclease n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YKI6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.150e-17
Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 GTSGATMEPRRGTLCAALFDDGGGPAWYRAKVLGSTPVG-LRVRYVDHGNTATVKASSLRPLDSSYFAFRPQAR 219
            G +G   E RR  +CAALFDDG GPAW RAKV    P G  RVR++D+GN  TV A+ LRPLD+    F PQA+
Sbjct:    9 GLAGKAFEVRRNAVCAALFDDGNGPAWNRAKVEYVHPDGSARVRFLDYGNDTTVTANRLRPLDADVLQFPPQAK 82
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BLAST of mRNA_L-elsbetiae_contig15777.4026.1 vs. uniprot
Match: A0A835YK22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK22_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.310e-17
Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    1 GTSGATMEPRRGTLCAALFD--DGGGPAWYRAKVLGSTPVG--LRVRYVDHGNTATVKASSLRPLDSSYFAFRPQAR 219
            GT GA ME RRGT CAALFD  DG G  W+RA++  +   G  + VRY+DHGN ATV A  LRPLD +YF   P A+
Sbjct:  822 GTGGAPMEHRRGTTCAALFDAGDGAGECWFRARIEAAARGGTAVTVRYIDHGNCATVPAGKLRPLDRTYFDLPPLAK 898
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BLAST of mRNA_L-elsbetiae_contig15777.4026.1 vs. uniprot
Match: A0A1V9YC11_9STRA (Nuclease n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC11_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.090e-16
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 GTSGATMEPRRGTLCAALFDDGGGPAWYRAKVLGSTPVGLRVRYVDHGNTATVKASSLRPLDSSYFAFRPQAR 219
            G  G   E +RG LCAALFDDG GP W RA+V   T  G++VR++DHGNT  +    LRPLD S   F PQA+
Sbjct:  699 GIEGKAFEIKRGVLCAALFDDGAGPLWNRARVESMTVRGVQVRFIDHGNTEYMPTQRLRPLDPSLAHFPPQAK 771
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BLAST of mRNA_L-elsbetiae_contig15777.4026.1 vs. uniprot
Match: A0A067C0V4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0V4_SAPPC)

HSP 1 Score: 81.6 bits (200), Expect = 2.040e-16
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 GTSGATMEPRRGTLCAALFDDGGGPAWYRAKVLGSTPVGLRVRYVDHGNTATVKASSLRPLDSSYFAFRPQAR 219
            GT G T E ++G LCAALFDDG GPAW RA++   +  G++V +VDHGNT  V  + LRPLD +   + PQA+
Sbjct:  678 GTDGKTFEMKKGVLCAALFDDGQGPAWNRARIESLSVRGVQVFFVDHGNTEFVPTTRLRPLDPALAQYPPQAK 750
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BLAST of mRNA_L-elsbetiae_contig15777.4026.1 vs. uniprot
Match: A0A3F2RSG8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RSG8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.190e-16
Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 GTSGATMEPRRGTLCAALFDDGGGPAWYRAKVLGSTPVG-LRVRYVDHGNTATVKASSLRPLDSSYFAFRPQAR 219
            G +G T E RR  +CAALFDDG GPAW RAKV    P G  RVR++D+GN  TV  + LRPLD+    F PQA+
Sbjct:  687 GLAGKTFEVRRNAVCAALFDDGSGPAWNRAKVEYVHPDGSARVRFLDYGNETTVTPNRLRPLDADVLQFPPQAK 760
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BLAST of mRNA_L-elsbetiae_contig15777.4026.1 vs. uniprot
Match: H3GJC3_PHYRM (Uncharacterized protein n=19 Tax=Peronosporaceae TaxID=4777 RepID=H3GJC3_PHYRM)

HSP 1 Score: 79.7 bits (195), Expect = 9.700e-16
Identity = 42/74 (56.76%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 GTSGATMEPRRGTLCAALFDDGGGPAWYRAKVLGSTPVG-LRVRYVDHGNTATVKASSLRPLDSSYFAFRPQAR 219
            G SG T E RR  +CAALFDDG G AW RAKV    P G  RVR++D+GN  TV A+ LRPLD+    F PQA+
Sbjct:  734 GLSGKTFEVRRNAVCAALFDDGNGLAWNRAKVEYVHPDGSARVRFLDYGNETTVTANRLRPLDADVLQFPPQAK 807
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BLAST of mRNA_L-elsbetiae_contig15777.4026.1 vs. uniprot
Match: M4C3N0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3N0_HYAAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.810e-15
Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 GTSGATMEPRRGTLCAALFDDGGGPAWYRAKVLGSTPVG-LRVRYVDHGNTATVKASSLRPLDSSYFAFRPQAR 219
            G +G   E RR  +CAALFDDGGG AW RAKV    P G  RVR++D+GN  TV A+ LRPLD+    F PQA+
Sbjct:  737 GLAGKAFEVRRNAVCAALFDDGGGLAWNRAKVEYVHPDGSARVRFLDYGNMTTVTANRLRPLDADVLQFPPQAK 810
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BLAST of mRNA_L-elsbetiae_contig15777.4026.1 vs. uniprot
Match: A0A662WVM6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVM6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.700e-15
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 GTSGATMEPRRGTLCAALFDDGGGPAWYRAKVLGSTPVG-LRVRYVDHGNTATVKASSLRPLDSSYFAFRPQAR 219
            G +G   E RR  +CAALF+DGG PAW RAKV    P G  RVR++D+GN ATV  + LRPLD+    F PQA+
Sbjct:  184 GLAGKAFEVRRNAVCAALFEDGGEPAWNRAKVEFVHPDGSARVRFLDYGNQATVGPNRLRPLDADVLQFPPQAK 257
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BLAST of mRNA_L-elsbetiae_contig15777.4026.1 vs. uniprot
Match: A0A484E3N6_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3N6_BRELC)

HSP 1 Score: 77.0 bits (188), Expect = 8.710e-15
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 GTSGATMEPRRGTLCAALFDDGGGPAWYRAKVLGSTPVG-LRVRYVDHGNTATVKASSLRPLDSSYFAFRPQAR 219
            G SG T E RR  +CAALFDDG G  W RAKV      G  RVR++D+GN ATV A+ LRPLD+    + PQA+
Sbjct: 1611 GLSGKTFEVRRNAVCAALFDDGNGSTWNRAKVEHVASDGSARVRFLDYGNQATVTANCLRPLDADALQYPPQAK 1684
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15777.4026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXU2_9PHAE5.550e-3994.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2P4YKI6_9STRA4.150e-1755.41Nuclease n=1 Tax=Phytophthora palmivora var. palmi... [more]
A0A835YK22_9STRA4.310e-1755.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9YC11_9STRA1.090e-1653.42Nuclease n=1 Tax=Achlya hypogyna TaxID=1202772 Rep... [more]
A0A067C0V4_SAPPC2.040e-1652.05Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A3F2RSG8_9STRA5.190e-1655.41Uncharacterized protein n=5 Tax=Phytophthora kerno... [more]
H3GJC3_PHYRM9.700e-1656.76Uncharacterized protein n=19 Tax=Peronosporaceae T... [more]
M4C3N0_HYAAE1.810e-1555.41Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A662WVM6_9STRA4.700e-1554.05Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A484E3N6_BRELC8.710e-1554.05Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15777contigL-elsbetiae_contig15777:3706..3924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue3.9e-30
Seed eggNOG ortholog2880.D8LGL1
KEGG koko:K15979
KEGG Pathwayko05169,ko05203,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006629,GO:0006720,GO:0006721,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009266,GO:0009408,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009685,GO:0009686,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010371,GO:0010372,GO:0010467,GO:0010468,GO:0010494,GO:0010565,GO:0010605,GO:0010629,GO:0010817,GO:0012505,GO:0016020,GO:0016053,GO:0016070,GO:0016071,GO:0016101,GO:0016102,GO:0016114,GO:0016787,GO:0016788,GO:0019216,GO:0019222,GO:0019439,GO:0019747,GO:0019752,GO:0030054,GO:0030312,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032350,GO:0032352,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034605,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042221,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043455,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045828,GO:0045834,GO:0046394,GO:0046483,GO:0046686,GO:0046700,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055044,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0090305,GO:0090351,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.gamete generation
EggNOG OGsCOG1525@1,KOG2039@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size219
Cds size201
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.841568-UTR-L-elsbetiae_contig15777:3705..37231622815647.841568-UTR-L-elsbetiae_contig15777:3705..3723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15777 3706..3723 +
1691683012.9293768-UTR-L-elsbetiae_contig15777:3705..37231691683012.9293768-UTR-L-elsbetiae_contig15777:3705..3723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15777 3706..3723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.8574057-CDS-L-elsbetiae_contig15777:3723..39241622815647.8574057-CDS-L-elsbetiae_contig15777:3723..3924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15777 3724..3924 +
1691683012.9408367-CDS-L-elsbetiae_contig15777:3723..39241691683012.9408367-CDS-L-elsbetiae_contig15777:3723..3924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15777 3724..3924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15777.4026.1prot_L-elsbetiae_contig15777.4026.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15777 3724..3924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15777.4026.1

>prot_L-elsbetiae_contig15777.4026.1 ID=prot_L-elsbetiae_contig15777.4026.1|Name=mRNA_L-elsbetiae_contig15777.4026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MEPRRGTLCAALFDDGGGPAWYRAKVLGSTPVGLRVRYVDHGNTATVKAS
SLRPLDSSYFAFRPQAR
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mRNA from alignment at L-elsbetiae_contig15777:3706..3924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15777.4026.1 ID=mRNA_L-elsbetiae_contig15777.4026.1|Name=mRNA_L-elsbetiae_contig15777.4026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=219bp|location=Sequence derived from alignment at L-elsbetiae_contig15777:3706..3924+ (Laminarionema elsbetiae ELsaHSoW15)
GGCACGTCGGGCGCCACGATGGAGCCGCGCAGGGGCACGCTGTGCGCCGC
GCTCTTCGACGACGGCGGCGGCCCGGCCTGGTACCGCGCGAAGGTGCTCG
GCTCGACCCCGGTCGGCCTCAGGGTGCGGTACGTCGACCATGGCAACACG
GCCACCGTCAAGGCCTCCAGCCTGCGCCCGCTGGACTCGTCTTACTTCGC
CTTCCGACCCCAGGCCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15777:3706..3924+

>mRNA_L-elsbetiae_contig15777.4026.1 ID=mRNA_L-elsbetiae_contig15777.4026.1|Name=mRNA_L-elsbetiae_contig15777.4026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig15777:3706..3924+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCCGCGCAGGGGCACGCTGTGCGCCGCGCTCTTCGACGACGGCGG
CGGCCCGGCCTGGTACCGCGCGAAGGTGCTCGGCTCGACCCCGGTCGGCC
TCAGGGTGCGGTACGTCGACCATGGCAACACGGCCACCGTCAAGGCCTCC
AGCCTGCGCCCGCTGGACTCGTCTTACTTCGCCTTCCGACCCCAGGCCAG
GATGGAGCCGCGCAGGGGCACGCTGTGCGCCGCGCTCTTCGACGACGGCG
GCGGCCCGGCCTGGTACCGCGCGAAGGTGCTCGGCTCGACCCCGGTCGGC
CTCAGGGTGCGGTACGTCGACCATGGCAACACGGCCACCGTCAAGGCCTC
CAGCCTGCGCCCGCTGGACTCGTCTTACTTCGCCTTCCGACCCCAGGCCA
GG
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