mRNA_L-elsbetiae_contig1576.4020.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1576.4020.1
Unique NamemRNA_L-elsbetiae_contig1576.4020.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1576.4020.1 vs. uniprot
Match: A0A6H5K0Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.190e-21
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 2 
Query:  179 DTVVNVIGFSAGFLVAVSLLPQIWRAHKRESAEDLSYVWQGTVAAGVLLQLVYLYHYGMWAVFFPLFAELAFIAYLTGLKLYFEHHLFGIG 451
            D + N +G + G ++A +L+PQI  AHKR SAED+SY+WQ     G+   ++Y  H+G+WAVFFP+  E + + YLT LK+YFE    G G
Sbjct:    9 DQIFNAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIYVTGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTALKMYFEKFASGDG 99
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BLAST of mRNA_L-elsbetiae_contig1576.4020.1 vs. uniprot
Match: D7G1V4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V4_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.790e-13
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 2 
Query:  179 DTVVNVIGFSAGFLVAVSLLPQIWRAHKRESAEDLSYVWQ 298
            DT+V+ IGFSAGFLVA SLLPQIWRAHKR SA DLS+ WQ
Sbjct:    5 DTIVDAIGFSAGFLVASSLLPQIWRAHKRRSAADLSFTWQ 44
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BLAST of mRNA_L-elsbetiae_contig1576.4020.1 vs. uniprot
Match: A0A7S1NG12_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NG12_9EUGL)

HSP 1 Score: 60.8 bits (146), Expect = 2.440e-8
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:  185 VVNVIGFSAGFLVAVSLLPQIWRAHKRESAEDLSYVWQGTVAAGVLLQLVYLYHYGMWAVFFPLFAELAFIAYLTGLKLYFEH 433
            V ++IG   G LVAVSL+PQ+++  +  S +D+SY +Q     G+   L Y    G+ A++ P F E   IA LT LK+YFE+
Sbjct:   47 VTDLIGTGGGLLVAVSLVPQLYKTIRTRSTQDISYGYQAVYMIGLAGILYYALALGLPAIYGPAFFEFFCIAALTVLKVYFEY 129
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BLAST of mRNA_L-elsbetiae_contig1576.4020.1 vs. uniprot
Match: A0A815P5U6_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815P5U6_9BILA)

HSP 1 Score: 58.2 bits (139), Expect = 1.360e-7
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 2 
Query:  188 VNVIGFSAGFLVAVSLLPQIWRAHKRESAEDLSYVWQGTVAAGVLLQLVYLYHYGMWAVFFPLFAELAFIAYLTGLKLYFEHH 436
            ++++G+  G L+A+ LLPQ++R +K  SA D SY+W     AG+++ +VYL      A +  L  E A    L  +K Y + H
Sbjct:    6 IDLLGYLGGALLAICLLPQLYRTYKTRSAGDFSYIWNVLYMAGMIITIVYLIEVKALAGWISLVCEFAMALALFIMKAYLQFH 88
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BLAST of mRNA_L-elsbetiae_contig1576.4020.1 vs. uniprot
Match: A0A815VEQ7_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815VEQ7_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 3.470e-6
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 2 
Query:  212 GFLVAVSLLPQIWRAHKRESAEDLSYVWQGTVAAGVLLQLVYLYHYGMWAVFFPLFAELAFIAYLTGLKLYFEHH 436
            G L+A+ LLPQ++R +K  SAED SY+W     AG+++ ++YL      A +  L  E A    L  +K Y + H
Sbjct:    1 GALLAICLLPQLYRTYKTRSAEDFSYIWNLLYMAGMIITMIYLIEVKALAGWISLVCEFAMALALFIMKAYLQFH 75
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BLAST of mRNA_L-elsbetiae_contig1576.4020.1 vs. uniprot
Match: A0A2H9L3U1_9ARCH (Uncharacterized protein n=2 Tax=DPANN group TaxID=1783276 RepID=A0A2H9L3U1_9ARCH)

HSP 1 Score: 51.6 bits (122), Expect = 1.530e-5
Identity = 25/66 (37.88%), Postives = 43/66 (65.15%), Query Frame = 2 
Query:  185 VVNVIGFSAGFLVAVSLLPQIWRAHKRESAEDLSYVWQGTVAAGVLLQLVYLYHYGMWAVFFPLFA 382
            + N+IGF+AGFL+AVS++PQ+ +++K +S ED+S +    +  G  L ++Y    G+    FP+ A
Sbjct:    2 IENIIGFAAGFLIAVSMIPQVIKSYKTKSVEDISPLMLFVIGIGTALWVIY----GILITSFPIIA 63
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BLAST of mRNA_L-elsbetiae_contig1576.4020.1 vs. uniprot
Match: A0A1F6S3E2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Moranbacteria bacterium RIFOXYB1_FULL_43_19 TaxID=1801649 RepID=A0A1F6S3E2_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.530e-5
Identity = 20/50 (40.00%), Postives = 34/50 (68.00%), Query Frame = 2 
Query:  188 VNVIGFSAGFLVAVSLLPQIWRAHKRESAEDLSYVWQGTVAAGVLLQLVY 337
            + + G+ AGF++A+SL PQ+W+A + +S  D+S +W     +G+LL L Y
Sbjct:    4 IQLTGYLAGFVIAMSLTPQVWKAWRTKSTRDISLLWNAIYISGLLLFLAY 53
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BLAST of mRNA_L-elsbetiae_contig1576.4020.1 vs. uniprot
Match: A0A6A3MSD7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MSD7_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.640e-5
Identity = 27/85 (31.76%), Postives = 46/85 (54.12%), Query Frame = 2 
Query:  176 MDTVVNVIGFSAGFLVAVSLLPQIWRAHKRESAEDLSYVWQGTVAAGVLLQLVYLYHYGMWAVFFPLFAELAFIAYLTGLKLYFE 430
            M    N++G    F+++ SL+PQI + ++ +SA DLS  +Q    AG+ L  VY     +W ++ P+  ELA    L  +K  ++
Sbjct:    1 MGLTYNILGLVGSFMISASLVPQIVKVYRTQSARDLSRSFQLLYVAGLTLVAVYGVGESLWPIWIPVVIELAGGLTLLAMKFIYD 85
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1576.4020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K0Z2_9PHAE5.190e-2146.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1V4_ECTSI3.790e-1380.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1NG12_9EUGL2.440e-840.96Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A815P5U6_9BILA1.360e-734.94Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A815VEQ7_9BILA3.470e-637.33Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A2H9L3U1_9ARCH1.530e-537.88Uncharacterized protein n=2 Tax=DPANN group TaxID=... [more]
A0A1F6S3E2_9BACT1.530e-540.00Uncharacterized protein n=1 Tax=Candidatus Moranba... [more]
A0A6A3MSD7_9STRA7.640e-531.76Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1576contigL-elsbetiae_contig1576:14153..17184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue8.9e-08
Seed eggNOG ortholog2880.D7G1V2
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.PQ loop repeat
EggNOG OGs2CZ06@1,2S7J2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPQ-loop repeat
Ec32 orthologEc-07_003990.1
Exons2
Model size601
Cds size426
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1576.4020.1prot_L-elsbetiae_contig1576.4020.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1576 14328..17184 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.3651817-UTR-L-elsbetiae_contig1576:14152..143271622815647.3651817-UTR-L-elsbetiae_contig1576:14152..14327Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1576 14153..14327 +
1691683012.5801337-UTR-L-elsbetiae_contig1576:14152..143271691683012.5801337-UTR-L-elsbetiae_contig1576:14152..14327Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1576 14153..14327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.3756692-CDS-L-elsbetiae_contig1576:14327..144501622815647.3756692-CDS-L-elsbetiae_contig1576:14327..14450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1576 14328..14450 +
1691683012.5911603-CDS-L-elsbetiae_contig1576:14327..144501691683012.5911603-CDS-L-elsbetiae_contig1576:14327..14450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1576 14328..14450 +
1622815647.3854454-CDS-L-elsbetiae_contig1576:16881..171841622815647.3854454-CDS-L-elsbetiae_contig1576:16881..17184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1576 16882..17184 +
1691683012.601549-CDS-L-elsbetiae_contig1576:16881..171841691683012.601549-CDS-L-elsbetiae_contig1576:16881..17184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1576 16882..17184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1576.4020.1

>prot_L-elsbetiae_contig1576.4020.1 ID=prot_L-elsbetiae_contig1576.4020.1|Name=mRNA_L-elsbetiae_contig1576.4020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
MDTVVNVIGFSAGFLVAVSLLPQIWRAHKRESAEDLSYVWQGTVAAGVLL
QLVYLYHYGMWAVFFPLFAELAFIAYLTGLKLYFEHHLFGIGRGAGRDRP
FVNRKMEGLSSSDGYSVIGGGAGGSGAGANLLDSSVAGTGSG
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mRNA from alignment at L-elsbetiae_contig1576:14153..17184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1576.4020.1 ID=mRNA_L-elsbetiae_contig1576.4020.1|Name=mRNA_L-elsbetiae_contig1576.4020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3032bp|location=Sequence derived from alignment at L-elsbetiae_contig1576:14153..17184+ (Laminarionema elsbetiae ELsaHSoW15)
GTCACACGTGTCGCTTTCTCCGGTACCCAAAGGTTGAGCAGGACGCATCA
GTGCAGAGCGGATTACTAGGCCTTCGCTAGAGCGCTTTGAATGGGAGAAA
CCCGAGAAATCTGTAAACACAGGACCTGAGGATAAGGCGAAGGAGGTGCT
CGTGAGGAAGGGCAGGCTTGCCGGGATGGACACAGTCGTCAACGTGATAG
GCTTCTCCGCGGGTTTCCTGGTGGCAGTCTCCTTGCTCCCTCAAATATGG
CGAGCCCACAAGAGAGAGTCAGCGGAGGATCTCAGTTATGTCTGGCAGGT
AAGCAACGCGGTGTACTGCTGGATGTCTTGGGCAACGGCGTTACCATCTG
TTACATGTTTTATCCTAGATATCTAGATGTAAACAAAAGCGCCCCGATAC
TGAAAACCGCAAACGGCGAGGAGAGAGGGAGTGGGCAGCGATCTCGTGCG
TATGCCGGCCCGATGCTCACGCTGATCGTGTTGATCGTTGTTGATTCTCC
ACTCAGTTGGACAGATGAAGCAATTCGAAAATGACCGAAGAGCACGCACT
GCTGTACACTAAACTAAATCCAGACCAGTTGGAGACCTTGTCGGGGGCAA
GCAAGCGTCCGTTTTCTCGAGCACAAAGCTGTCGGCGTCACGGCGGTACA
TGCGGACGGCGGTAGTACATACGGGGAGACATTAGATCATATTATGTAGA
CTAACATGGGGAGAGCACACGTAGTTGTTGTTGGGCTCCTGTTTATTTTT
TGTACTACTGCTGTCCCAAAATATTCAGTTCGAGATTCAGCATATCATTT
ATGAATGCGTCGAGTGTGTCTGTCTTTGCGACCACGGGCCCCCATGGATG
TTTTGATGTTTTTGGATAATTGTAGAGAGCTAATGTGAGAAACAACAACA
ACAGCAGCAACAGAATTGGATGTAGGCAGGACGGGATCTCTGTTCCCACC
GCTGCCTAGATTGAAGAACACATTTGTACGTTCAATGCAGAGCCCGCCCC
CCACCACTTACTTCTAGAGCAAAGTCTTGGCTATTTATCGCTCCTTTGTA
GCCAAGAAGTACATGCGTATGCTGTGAGTGGGTGGGGTCACCGCGGTGCT
GGTAAACTTCTGACCTTTGAAAATATCTTCAACAACACGAACAACGGCGG
CAGGCAGGCCGTGTTATGACAGAATTCCCTCTCTCTGGGCAACACTACTC
AAGGCCTTCGAGCGTTTCTTTGTCGGGGAGCTAAGGGTCGTCCTTAACGA
GAGCATAAAATTCTTCCTTTTCTTCTTTTTCTCGTGATTGTTCAGTTTAG
GGAGGCGTTTTTTCTGCTTTTTTCTCGTTTCGCCGAATTTGAAGGAGGGT
GCTTTGTGAAGGGCTCCTTCGTTTTCTCCTTTTTTTGAAAATTCGGTGTT
TTCGCGGAAACAGGTGATCGTGCCAGAATGAGAGCAACTACCGCATGCAT
TGCCTAGACAAAGGCCAATCCTGTAGGTCATACACAAACCCTCTGCCAGC
ATCCAAAAAATCAGGGCGTTGTGTGCCTTATTGGCCGAACACGAGCTGTA
CATGTCATCAGCAATGTTCTTCTGCTCACAATCTCCGCTTTTTATGGCTG
CTACGTGTGTGACAAGGTAAAACCACATGCCAGAACGAGGTATTTGGCCT
GCAACTTCCGCAAACAGTAGTCAATGCCGTGGGTTCACACGCAATCCCTC
TGCAGGCGTCCCGGAAACAGGGCGTGTTGTCCAGTTTTGAGTGCGCACTG
GCCGCGAGCGTGAACTGAAGTGTGTGTTGATGTTGTCATTTTTTCCGCTC
TTCCATTTTTTTTGTATTTCCGCGTGTAACCAGTCAACAACGTACGCCAG
AGAGAGACCTCAGGCCAACGGTATCCGTATACAGCAATCAATTGGCGAAC
CCATACACATGCTCTCTGTGTGCGACCCAAAATCAGGACCGTTTGCCCAG
TTTTGAGTTCGCATGGCCCGCGAAGGTGAATTGAAGTGCGATTTGATGTT
GGGTCTTTCGGCGTTTGTCATTTTTCTGCCGTTGCTCCGGTGTGACGAGT
CAAAGTGCACCCCAGAGAGAGCCCTTAGGCTGATGATATCCACAAACAGC
ACTCAACGGCGTGAGTCCATACACACGCCTCTGCAGGCGACCCACAAACA
TGGAGTTCTGTGCCTTGTTGGCCGCACACTGTCCAAAAAAATGAACCGAA
CCGTTCGGTGACCAGCAAAAATACCGGAATGTTCCTCGAGGAGCGTTAGG
AATGACGCGCTCATTTCTCTTTTTATAATCCTAGAAAAAGAAGAAACAGA
TCCCTGTCGTTAAGGACGACCCTAAATGGTTCGACCTTTTGGGCATTTTT
TTCGAGAAAACCGACCGTAAATGAGCACAAATCTTGGAGTTTCAACACTT
CCTTGTGTGCCTCTGCGGAAAGGCAATCAAAGGCAACCCCCCTGTTTTTG
TTCTGTCGTCGTCGCCCATCACCGGCTAGTATTTGAGTGTTCGCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAACAACCAACACAAAA
CCAACACCCCACCCACCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNN
NCCCCCTTTTTTTTTTTGTCGTCCCCCCCCCCCCCCCGCTAGTATTTGGG
GGGTCCCCCCCCCCCCCCCCCCGCGCCTAACCTCGGAAACAAAAAAAACA
TACGATAACAAACCAAAAACCAAAAACAGGGCACCGTCGCAGCTGGAGTC
TTGCTGCAGCTCGTCTACCTGTACCACTACGGCATGTGGGCGGTTTTTTT
CCCGCTCTTCGCCGAGCTCGCCTTCATCGCCTACCTCACCGGGCTCAAAC
TGTACTTCGAACACCACCTATTCGGCATTGGGCGGGGGGCTGGCCGGGAC
AGACCGTTCGTCAACAGAAAGATGGAGGGGCTTTCTAGCAGCGACGGCTA
CAGCGTTATCGGTGGTGGTGCGGGTGGCAGCGGCGCGGGGGCCAATCTGC
TAGATAGTAGCGTCGCTGGGACGGGCAGCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1576:14153..17184+

>mRNA_L-elsbetiae_contig1576.4020.1 ID=mRNA_L-elsbetiae_contig1576.4020.1|Name=mRNA_L-elsbetiae_contig1576.4020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig1576:14153..17184+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACACAGTCGTCAACGTGATAGGCTTCTCCGCGGGTTTCCTGGTGGC
AGTCTCCTTGCTCCCTCAAATATGGCGAGCCCACAAGAGAGAGTCAGCGG
AGGATCTCAGTTATGTCTGGCAGATGGACACAGTCGTCAACGTGATAGGC
TTCTCCGCGGGTTTCCTGGTGGCAGTCTCCTTGCTCCCTCAAATATGGCG
AGCCCACAAGAGAGAGTCAGCGGAGGATCTCAGTTATGTCTGGCAGGGCA
CCGTCGCAGCTGGAGTCTTGCTGCAGCTCGTCTACCTGTACCACTACGGC
ATGTGGGCGGTTTTTTTCCCGCTCTTCGCCGAGCTCGCCTTCATCGCCTA
CCTCACCGGGCTCAAACTGTACTTCGAACACCACCTATTCGGCATTGGGC
GGGGGGCTGGCCGGGACAGACCGTTCGTCAACAGAAAGATGGAGGGGCTT
TCTAGCAGCGACGGCTACAGCGTTATCGGTGGTGGTGCGGGTGGCAGCGG
CGCGGGGGCCAATCTGCTAGATAGTAGCGTCGCTGGGACGGGCAGCGGAG
GCACCGTCGCAGCTGGAGTCTTGCTGCAGCTCGTCTACCTGTACCACTAC
GGCATGTGGGCGGTTTTTTTCCCGCTCTTCGCCGAGCTCGCCTTCATCGC
CTACCTCACCGGGCTCAAACTGTACTTCGAACACCACCTATTCGGCATTG
GGCGGGGGGCTGGCCGGGACAGACCGTTCGTCAACAGAAAGATGGAGGGG
CTTTCTAGCAGCGACGGCTACAGCGTTATCGGTGGTGGTGCGGGTGGCAG
CGGCGCGGGGGCCAATCTGCTAGATAGTAGCGTCGCTGGGACGGGCAGCG
GA
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