mRNA_L-elsbetiae_contig15751.4016.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15751.4016.1
Unique NamemRNA_L-elsbetiae_contig15751.4016.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: A0A6H5JLD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD3_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 1.630e-72
Identity = 126/188 (67.02%), Postives = 147/188 (78.19%), Query Frame = 3
Query:    9 TVVVPRFSESWRYAGWTSTQESAAGGAVDSSGDLVLCGKSNGLAFSIDDDSVTTTYSADFAAVKLQGTTGEELWTWEDSSADGADWMVSAGTDGNDNVFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASSSTSSSLGGGGFGVSYVLGVSVGSDGDPILVGSTFNSLVGDVGIPGDW 572
            TV+   F+ESWRYAGWT+ QESAAGG V   G+LVLCGKSNGLAF++DDD+ T+T SADF+AVKL G +GE LWTW DSS  GADWM SAG D   NV LGGFTNG W  G+ N DG RDIAAVKL G  GTE+WRYQA++STSS    GG+GVSYVLGV+V S   P+LVG+T+N+LV  VG+PGDW
Sbjct:    4 TVLRAVFTESWRYAGWTTAQESAAGGVVGGDGNLVLCGKSNGLAFNLDDDTATSTSSADFSAVKLDGDSGETLWTWVDSSLQGADWMTSAGADSASNVILGGFTNGEW--GTSNLDGLRDIAAVKLDGEAGTEVWRYQAAASTSSF---GGYGVSYVLGVAVDSTDHPVLVGTTYNNLVDGVGVPGDW 186          
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: A0A6H5KD80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD80_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.260e-32
Identity = 88/191 (46.07%), Postives = 112/191 (58.64%), Query Frame = 3
Query:   12 VVVPRFSESWRYAGWTSTQESAAGGAVDSSGDLVLCGKSNGLAFSID--DDSVTTTYSADFAAVKLQGTTGEELWTWEDSSADG-ADWMVSAGTDGNDNVFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQAS--SSTSSSLGGGGFGVSYVLGVSVGSDGDPILVGSTFNSLVGDVGIPGD 569
            V  P F E WR+ GWT++ E+   GAVDS GD+VL G + G A + D  DD+    YS DFAAVKL+G +GE LWTW  SS    AD  +++ TD N++V +GG T G W+S   N D    +AAVKL G  G E+WRYQ     S +S      +G   VLGV+V  D +  L G T+ SLV   G PGD
Sbjct:    3 VATPEFDEVWRWDGWTTSDETLTHGAVDSDGDVVLVG-TQGYAAAEDLVDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGSEADVFLASDTDSNNDVIMGGTTEGYWSS--SNHDSVPHLAAVKLDGSTGDEIWRYQERPPDSYTSLESFFYYGSGSVLGVAVDGDDNCFLAGQTYGSLVFGEGDPGD 190          
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: D7FKX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX8_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 8.800e-31
Identity = 86/188 (45.74%), Postives = 108/188 (57.45%), Query Frame = 3
Query:   21 PRFSESWRYAGWTSTQESAAGGAVDSSGDLVLCGKSNGLAFSID--DDSVTTTYSADFAAVKLQGTTGEELWTWEDSSADG-ADWMVSAGTDGNDNVFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASSSTSSSLGGGGFGVSY--VLGVSVGSDGDPILVGSTFNSLVGDVGIPGD 569
            P F E WR+ GWT+  E    GAVD  G++VL G S G A + D  DD+    YS DFAAVKL+G +GE LWTW  SS    AD  ++  TD N+++ +GG T G W+S +P  D    IA VKL G  G E+WRYQ     S +  G  F   Y  V GV+V  D + +LVG T+ SLV   G PGD
Sbjct:    6 PEFDEVWRWDGWTTLDEHTNDGAVDLDGNVVLVG-SQGYAAAEDLLDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGSEADMFLAVDTDSNNDIVMGGRTEGYWSSSNP--DSVAHIAVVKLDGGTGDEIWRYQEHPPDSYTSLGSYFYYGYGSVSGVAVDGDDNCLLVGQTYGSLVYGEGDPGD 190          
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: D8LJC9_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC9_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 6.270e-30
Identity = 84/189 (44.44%), Postives = 108/189 (57.14%), Query Frame = 3
Query:   18 VPRFSESWRYAGWTSTQESAAGGAVDSSGDLVLCGKSNGLA--FSIDDDSVTTTYSADFAAVKLQGTTGEELWTWEDSSADG-ADWMVSAGTDGNDNVFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASSSTSSSLGGGGF--GVSYVLGVSVGSDGDPILVGSTFNSLVGDVGIPGD 569
            +P F E WR+ GWT+  E    GAVD  G++VL G     A  ++IDD  V   YS DFAAVKL+G +GE LWTW  SS    AD  ++  TD N+++ +GG T G W+S +P  D    IA VKL G  G E+WRYQ     S +  G     G+  V GV+V  D + +LVG T+ SLV   G PGD
Sbjct:    5 IPEFDEVWRWDGWTTLDEHTNDGAVDLDGNVVLVGSQGYAAAEYTIDDTFVDA-YSGDFAAVKLEGASGEVLWTWTASSLGSEADTFLAVDTDSNNDIVMGGRTEGYWSSSNP--DTTPHIAVVKLDGGTGDEIWRYQEHPPDSYTSWGNSVYHGLGSVSGVAVDGDDNCLLVGQTYGSLVYGEGDPGD 190          
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: D8LJD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD2_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.380e-26
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 3
Query:  300 VFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASSSTSSSLGGGGFGVSYVLGVSVGSDGDPILVGSTFNSLVGDVGIPGDW 572
            V LGGFTNG W  G+ N DG RDIAAVKL G  GTE+WRYQA++STSSS   GG+GVSYVLGV+V S  +P+LVG+T+NSLV  VG+PGDW
Sbjct:   29 VILGGFTNGEW--GASNLDGLRDIAAVKLDGEAGTEVWRYQAAASTSSS---GGYGVSYVLGVAVDSTNNPVLVGTTYNSLVDGVGVPGDW 114          
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: D8LJD0_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 7.020e-21
Identity = 67/142 (47.18%), Postives = 83/142 (58.45%), Query Frame = 3
Query:  153 DDSVTTTYSADFAAVKLQGTTGEELWTWEDSS-ADGADWMVSAGTDGNDNVFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASS-STSSSLGGGGF-GVSYVLGVSVGSDGDPILVGSTFNSLVGDVGIPGD 569
            DD+    YS DFAAVKL G +G+ LWTW DSS    AD  ++  TD ND+V +GG T G W+S +P  D    +AAVKL G  G E+WRYQ     T +SLG   + G   V GV+V  D +  LVG T+ SLV   G  GD
Sbjct:   55 DDTFEDAYSGDFAAVKLDGASGDLLWTWTDSSLGSAADLFLAGDTDSNDDVVMGGRTEGYWSSSNP--DSVAHLAAVKLDGSTGDEIWRYQEHPPDTYTSLGSYFYYGSGSVTGVAVDGDDNCFLVGQTWGSLVFGEGDAGD 194          
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: A0A3M1KKL7_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1KKL7_9DELT)

HSP 1 Score: 58.9 bits (141), Expect = 6.670e-7
Identity = 59/173 (34.10%), Postives = 73/173 (42.20%), Query Frame = 3
Query:   30 SESWRYA--GWTSTQESAAGGAVDSSGDLVLCGKSNGLAFSIDDDSVTTTYSADFAAVKLQGTTGEELWT--WEDSSADGADWMVSAGTDGNDNVFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASSSTSSSLGGGGFGVSYVLGVSVGSDGDPILVGSTFN 536
            +E WR    G  +T E AA   VD+SGD+V+ G  +  A              DFA VKL GTTG ELW    + S+A G D       D   NVF  G            S    D A VKL+G  G ELWR +      S   G        L V+V   GD I  G+ ++
Sbjct:  166 TELWRREIDGSANTDEEAAAVVVDASGDVVVAGTLSSPAT-----------QDDFAVVKLDGTTGAELWRVLLDGSAAAGNDAAYDVALDAGGNVFAVGRLK--------QSSSDADFAVVKLAGETGAELWRREIDGLADSGSDG-------ALRVAVDPAGDVIAAGNLYS 312          
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: A0A1H2YNQ6_LYSEN (Beta-propeller repeat-containing protein n=2 Tax=Lysobacter enzymogenes TaxID=69 RepID=A0A1H2YNQ6_LYSEN)

HSP 1 Score: 53.9 bits (128), Expect = 3.570e-5
Identity = 45/119 (37.82%), Postives = 56/119 (47.06%), Query Frame = 3
Query:   87 AVDSSGDLVLCGKSNGLAFSIDDDSVTTTYSADFAAVKLQGTTGEELWTWE-DSSADGA----DWMVSAGTDGNDNVFLGGFTNG----GWASGSPNSDGFRDIAAVKLSGVDGTELWR 416
            AVDS GD V+ GKS+G              + DFA VK  G TG + W    DS   GA    D   +   DGND+V++ G T G     W            +A VK SGVDG+E+WR
Sbjct:  266 AVDSRGDPVVTGKSDGAR------------NNDFATVKYDGATGAQRWAARFDSGPSGAIYYGDEAKAVAIDGNDDVYVTGGTAGVRGYNWR-----------MATVKYSGVDGSEVWR 361          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JLD3_9PHAE1.630e-7267.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD80_9PHAE1.260e-3246.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKX8_ECTSI8.800e-3145.74Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D8LJC9_ECTSI6.270e-3044.44Fibronectin type III domain protein n=1 Tax=Ectoca... [more]
D8LJD2_ECTSI1.380e-2668.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJD0_ECTSI7.020e-2147.18Fibronectin type III domain protein n=1 Tax=Ectoca... [more]
A0A3M1KKL7_9DELT6.670e-734.10Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
A0A1H2YNQ6_LYSEN3.570e-537.82Beta-propeller repeat-containing protein n=2 Tax=L... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15751contigL-elsbetiae_contig15751:2154..3142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog2880.D8LRF5
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons2
Model size573
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15751.4016.1prot_L-elsbetiae_contig15751.4016.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15751 2154..3140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.0679965-CDS-L-elsbetiae_contig15751:2153..24261622815647.0679965-CDS-L-elsbetiae_contig15751:2153..2426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15751 2154..2426 -
1691683012.3996532-CDS-L-elsbetiae_contig15751:2153..24261691683012.3996532-CDS-L-elsbetiae_contig15751:2153..2426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15751 2154..2426 -
1622815647.0819457-CDS-L-elsbetiae_contig15751:2843..31401622815647.0819457-CDS-L-elsbetiae_contig15751:2843..3140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15751 2844..3140 -
1691683012.4163063-CDS-L-elsbetiae_contig15751:2843..31401691683012.4163063-CDS-L-elsbetiae_contig15751:2843..3140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15751 2844..3140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.0947373-UTR-L-elsbetiae_contig15751:3140..31421622815647.0947373-UTR-L-elsbetiae_contig15751:3140..3142Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15751 3141..3142 -
1691683012.4256341-UTR-L-elsbetiae_contig15751:3140..31421691683012.4256341-UTR-L-elsbetiae_contig15751:3140..3142Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15751 3141..3142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15751.4016.1

>prot_L-elsbetiae_contig15751.4016.1 ID=prot_L-elsbetiae_contig15751.4016.1|Name=mRNA_L-elsbetiae_contig15751.4016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
MTTVVVPRFSESWRYAGWTSTQESAAGGAVDSSGDLVLCGKSNGLAFSID
DDSVTTTYSADFAAVKLQGTTGEELWTWEDSSADGADWMVSAGTDGNDNV
FLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASSSTSSSLG
GGGFGVSYVLGVSVGSDGDPILVGSTFNSLVGDVGIPGDW
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mRNA from alignment at L-elsbetiae_contig15751:2154..3142-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15751.4016.1 ID=mRNA_L-elsbetiae_contig15751.4016.1|Name=mRNA_L-elsbetiae_contig15751.4016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=989bp|location=Sequence derived from alignment at L-elsbetiae_contig15751:2154..3142- (Laminarionema elsbetiae ELsaHSoW15)
AGATGACGACCGTGGTGGTGCCCCGATTCTCGGAATCTTGGCGCTATGCC GGGTGGACAAGCACCCAAGAGTCCGCGGCCGGCGGTGCCGTCGACAGCAG CGGGGACCTCGTCTTGTGTGGGAAGAGCAACGGGCTCGCGTTTTCTATCG ACGATGACAGCGTCACGACCACCTATAGCGCAGACTTCGCTGCCGTGAAG CTGCAGGGAACAACGGGCGAAGAGTTGTGGACGTGGGAGGACTCTTCCGC AGATGGAGCGGATTGGATGGTGTCGGCGGGGACGGATGGCAACGACAACG TGAGAGCTCAGGGAGCATTAATGACGACGACACGATGGTGCAATGAAAAT AATTCTTGGAGCACTTATCGTGTATTTTGCCGATATGGGTGTAGTGCGCC GACCAGCAACTTACACGCGAAGCCTCCGTCCCTCCTACTTGGTCGGCCTG GCGCCTGCAGCAGGTGCTTCCCGTCTCCGCCTTGTCAACACCGGGAAACA GGAGTTATTCCGCAAATTATTTAGAGCACTCCCAGCAGGTGGTATATTTG TGTTGTTTCATTAAACCTGGTATGTACCTCGACCGTCGACGGCTTGACTT CCCTTCACCTCGCCTGGCTTGACCAAAGTCGGCTCCGACTGCTCTTGTCA CCTCATGCCGTTATCTCACGTCAGCTCATCATCATCTCACCCCGCCCCCC ACGTGTTTCCCCTTAGGTCTTTCTCGGGGGCTTCACAAATGGAGGCTGGG CTTCGGGTAGCCCCAACTCGGATGGCTTCAGAGACATCGCTGCGGTGAAA CTGTCCGGCGTAGACGGAACGGAGCTCTGGCGGTACCAAGCCTCGTCGTC GACGTCATCGTCTCTGGGTGGAGGGGGCTTCGGGGTTAGTTACGTGCTTG GGGTGTCCGTGGGCAGCGACGGCGATCCTATTCTGGTCGGCTCGACCTTC AACAGCTTGGTGGGAGACGTGGGGATACCCGGAGATTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15751:2154..3142-

>mRNA_L-elsbetiae_contig15751.4016.1 ID=mRNA_L-elsbetiae_contig15751.4016.1|Name=mRNA_L-elsbetiae_contig15751.4016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig15751:2154..3142- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGACCGTGGTGGTGCCCCGATTCTCGGAATCTTGGCGCTATGCCGG
GTGGACAAGCACCCAAGAGTCCGCGGCCGGCGGTGCCGTCGACAGCAGCG
GGGACCTCGTCTTGTGTGGGAAGAGCAACGGGCTCGCGTTTTCTATCGAC
GATGACAGCGTCACGACCACCTATAGCGCAGACTTCGCTGCCGTGAAGCT
GCAGGGAACAACGGGCGAAGAGTTGTGGACGTGGGAGGACTCTTCCGCAG
ATGGAGCGGATTGGATGGTGTCGGCGGGGACGGATGGCAACGACAACATG
ACGACCGTGGTGGTGCCCCGATTCTCGGAATCTTGGCGCTATGCCGGGTG
GACAAGCACCCAAGAGTCCGCGGCCGGCGGTGCCGTCGACAGCAGCGGGG
ACCTCGTCTTGTGTGGGAAGAGCAACGGGCTCGCGTTTTCTATCGACGAT
GACAGCGTCACGACCACCTATAGCGCAGACTTCGCTGCCGTGAAGCTGCA
GGGAACAACGGGCGAAGAGTTGTGGACGTGGGAGGACTCTTCCGCAGATG
GAGCGGATTGGATGGTGTCGGCGGGGACGGATGGCAACGACAACGTCTTT
CTCGGGGGCTTCACAAATGGAGGCTGGGCTTCGGGTAGCCCCAACTCGGA
TGGCTTCAGAGACATCGCTGCGGTGAAACTGTCCGGCGTAGACGGAACGG
AGCTCTGGCGGTACCAAGCCTCGTCGTCGACGTCATCGTCTCTGGGTGGA
GGGGGCTTCGGGGTTAGTTACGTGCTTGGGGTGTCCGTGGGCAGCGACGG
CGATCCTATTCTGGTCGGCTCGACCTTCAACAGCTTGGTGGGAGACGTGG
GGATACCCGGAGATTGGGTCTTTCTCGGGGGCTTCACAAATGGAGGCTGG
GCTTCGGGTAGCCCCAACTCGGATGGCTTCAGAGACATCGCTGCGGTGAA
ACTGTCCGGCGTAGACGGAACGGAGCTCTGGCGGTACCAAGCCTCGTCGT
CGACGTCATCGTCTCTGGGTGGAGGGGGCTTCGGGGTTAGTTACGTGCTT
GGGGTGTCCGTGGGCAGCGACGGCGATCCTATTCTGGTCGGCTCGACCTT
CAACAGCTTGGTGGGAGACGTGGGGATACCCGGAGATTGG
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