mRNA_L-elsbetiae_contig15751.4016.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: A0A6H5JLD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD3_9PHAE) HSP 1 Score: 239 bits (609), Expect = 1.630e-72 Identity = 126/188 (67.02%), Postives = 147/188 (78.19%), Query Frame = 3 Query: 9 TVVVPRFSESWRYAGWTSTQESAAGGAVDSSGDLVLCGKSNGLAFSIDDDSVTTTYSADFAAVKLQGTTGEELWTWEDSSADGADWMVSAGTDGNDNVFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASSSTSSSLGGGGFGVSYVLGVSVGSDGDPILVGSTFNSLVGDVGIPGDW 572 TV+ F+ESWRYAGWT+ QESAAGG V G+LVLCGKSNGLAF++DDD+ T+T SADF+AVKL G +GE LWTW DSS GADWM SAG D NV LGGFTNG W G+ N DG RDIAAVKL G GTE+WRYQA++STSS GG+GVSYVLGV+V S P+LVG+T+N+LV VG+PGDW Sbjct: 4 TVLRAVFTESWRYAGWTTAQESAAGGVVGGDGNLVLCGKSNGLAFNLDDDTATSTSSADFSAVKLDGDSGETLWTWVDSSLQGADWMTSAGADSASNVILGGFTNGEW--GTSNLDGLRDIAAVKLDGEAGTEVWRYQAAASTSSF---GGYGVSYVLGVAVDSTDHPVLVGTTYNNLVDGVGVPGDW 186
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: A0A6H5KD80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD80_9PHAE) HSP 1 Score: 131 bits (329), Expect = 1.260e-32 Identity = 88/191 (46.07%), Postives = 112/191 (58.64%), Query Frame = 3 Query: 12 VVVPRFSESWRYAGWTSTQESAAGGAVDSSGDLVLCGKSNGLAFSID--DDSVTTTYSADFAAVKLQGTTGEELWTWEDSSADG-ADWMVSAGTDGNDNVFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQAS--SSTSSSLGGGGFGVSYVLGVSVGSDGDPILVGSTFNSLVGDVGIPGD 569 V P F E WR+ GWT++ E+ GAVDS GD+VL G + G A + D DD+ YS DFAAVKL+G +GE LWTW SS AD +++ TD N++V +GG T G W+S N D +AAVKL G G E+WRYQ S +S +G VLGV+V D + L G T+ SLV G PGD Sbjct: 3 VATPEFDEVWRWDGWTTSDETLTHGAVDSDGDVVLVG-TQGYAAAEDLVDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGSEADVFLASDTDSNNDVIMGGTTEGYWSS--SNHDSVPHLAAVKLDGSTGDEIWRYQERPPDSYTSLESFFYYGSGSVLGVAVDGDDNCFLAGQTYGSLVFGEGDPGD 190
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: D7FKX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX8_ECTSI) HSP 1 Score: 127 bits (320), Expect = 8.800e-31 Identity = 86/188 (45.74%), Postives = 108/188 (57.45%), Query Frame = 3 Query: 21 PRFSESWRYAGWTSTQESAAGGAVDSSGDLVLCGKSNGLAFSID--DDSVTTTYSADFAAVKLQGTTGEELWTWEDSSADG-ADWMVSAGTDGNDNVFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASSSTSSSLGGGGFGVSY--VLGVSVGSDGDPILVGSTFNSLVGDVGIPGD 569 P F E WR+ GWT+ E GAVD G++VL G S G A + D DD+ YS DFAAVKL+G +GE LWTW SS AD ++ TD N+++ +GG T G W+S +P D IA VKL G G E+WRYQ S + G F Y V GV+V D + +LVG T+ SLV G PGD Sbjct: 6 PEFDEVWRWDGWTTLDEHTNDGAVDLDGNVVLVG-SQGYAAAEDLLDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGSEADMFLAVDTDSNNDIVMGGRTEGYWSSSNP--DSVAHIAVVKLDGGTGDEIWRYQEHPPDSYTSLGSYFYYGYGSVSGVAVDGDDNCLLVGQTYGSLVYGEGDPGD 190
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: D8LJC9_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC9_ECTSI) HSP 1 Score: 125 bits (313), Expect = 6.270e-30 Identity = 84/189 (44.44%), Postives = 108/189 (57.14%), Query Frame = 3 Query: 18 VPRFSESWRYAGWTSTQESAAGGAVDSSGDLVLCGKSNGLA--FSIDDDSVTTTYSADFAAVKLQGTTGEELWTWEDSSADG-ADWMVSAGTDGNDNVFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASSSTSSSLGGGGF--GVSYVLGVSVGSDGDPILVGSTFNSLVGDVGIPGD 569 +P F E WR+ GWT+ E GAVD G++VL G A ++IDD V YS DFAAVKL+G +GE LWTW SS AD ++ TD N+++ +GG T G W+S +P D IA VKL G G E+WRYQ S + G G+ V GV+V D + +LVG T+ SLV G PGD Sbjct: 5 IPEFDEVWRWDGWTTLDEHTNDGAVDLDGNVVLVGSQGYAAAEYTIDDTFVDA-YSGDFAAVKLEGASGEVLWTWTASSLGSEADTFLAVDTDSNNDIVMGGRTEGYWSSSNP--DTTPHIAVVKLDGGTGDEIWRYQEHPPDSYTSWGNSVYHGLGSVSGVAVDGDDNCLLVGQTYGSLVYGEGDPGD 190
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: D8LJD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD2_ECTSI) HSP 1 Score: 115 bits (288), Expect = 1.380e-26 Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 3 Query: 300 VFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASSSTSSSLGGGGFGVSYVLGVSVGSDGDPILVGSTFNSLVGDVGIPGDW 572 V LGGFTNG W G+ N DG RDIAAVKL G GTE+WRYQA++STSSS GG+GVSYVLGV+V S +P+LVG+T+NSLV VG+PGDW Sbjct: 29 VILGGFTNGEW--GASNLDGLRDIAAVKLDGEAGTEVWRYQAAASTSSS---GGYGVSYVLGVAVDSTNNPVLVGTTYNSLVDGVGVPGDW 114
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: D8LJD0_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD0_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 7.020e-21 Identity = 67/142 (47.18%), Postives = 83/142 (58.45%), Query Frame = 3 Query: 153 DDSVTTTYSADFAAVKLQGTTGEELWTWEDSS-ADGADWMVSAGTDGNDNVFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASS-STSSSLGGGGF-GVSYVLGVSVGSDGDPILVGSTFNSLVGDVGIPGD 569 DD+ YS DFAAVKL G +G+ LWTW DSS AD ++ TD ND+V +GG T G W+S +P D +AAVKL G G E+WRYQ T +SLG + G V GV+V D + LVG T+ SLV G GD Sbjct: 55 DDTFEDAYSGDFAAVKLDGASGDLLWTWTDSSLGSAADLFLAGDTDSNDDVVMGGRTEGYWSSSNP--DSVAHLAAVKLDGSTGDEIWRYQEHPPDTYTSLGSYFYYGSGSVTGVAVDGDDNCFLVGQTWGSLVFGEGDAGD 194
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: A0A3M1KKL7_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1KKL7_9DELT) HSP 1 Score: 58.9 bits (141), Expect = 6.670e-7 Identity = 59/173 (34.10%), Postives = 73/173 (42.20%), Query Frame = 3 Query: 30 SESWRYA--GWTSTQESAAGGAVDSSGDLVLCGKSNGLAFSIDDDSVTTTYSADFAAVKLQGTTGEELWT--WEDSSADGADWMVSAGTDGNDNVFLGGFTNGGWASGSPNSDGFRDIAAVKLSGVDGTELWRYQASSSTSSSLGGGGFGVSYVLGVSVGSDGDPILVGSTFN 536 +E WR G +T E AA VD+SGD+V+ G + A DFA VKL GTTG ELW + S+A G D D NVF G S D A VKL+G G ELWR + S G L V+V GD I G+ ++ Sbjct: 166 TELWRREIDGSANTDEEAAAVVVDASGDVVVAGTLSSPAT-----------QDDFAVVKLDGTTGAELWRVLLDGSAAAGNDAAYDVALDAGGNVFAVGRLK--------QSSSDADFAVVKLAGETGAELWRREIDGLADSGSDG-------ALRVAVDPAGDVIAAGNLYS 312
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Match: A0A1H2YNQ6_LYSEN (Beta-propeller repeat-containing protein n=2 Tax=Lysobacter enzymogenes TaxID=69 RepID=A0A1H2YNQ6_LYSEN) HSP 1 Score: 53.9 bits (128), Expect = 3.570e-5 Identity = 45/119 (37.82%), Postives = 56/119 (47.06%), Query Frame = 3 Query: 87 AVDSSGDLVLCGKSNGLAFSIDDDSVTTTYSADFAAVKLQGTTGEELWTWE-DSSADGA----DWMVSAGTDGNDNVFLGGFTNG----GWASGSPNSDGFRDIAAVKLSGVDGTELWR 416 AVDS GD V+ GKS+G + DFA VK G TG + W DS GA D + DGND+V++ G T G W +A VK SGVDG+E+WR Sbjct: 266 AVDSRGDPVVTGKSDGAR------------NNDFATVKYDGATGAQRWAARFDSGPSGAIYYGDEAKAVAIDGNDDVYVTGGTAGVRGYNWR-----------MATVKYSGVDGSEVWR 361 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15751.4016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig15751.4016.1 >prot_L-elsbetiae_contig15751.4016.1 ID=prot_L-elsbetiae_contig15751.4016.1|Name=mRNA_L-elsbetiae_contig15751.4016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp MTTVVVPRFSESWRYAGWTSTQESAAGGAVDSSGDLVLCGKSNGLAFSIDback to top mRNA from alignment at L-elsbetiae_contig15751:2154..3142- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig15751.4016.1 ID=mRNA_L-elsbetiae_contig15751.4016.1|Name=mRNA_L-elsbetiae_contig15751.4016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=989bp|location=Sequence derived from alignment at L-elsbetiae_contig15751:2154..3142- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig15751:2154..3142- >mRNA_L-elsbetiae_contig15751.4016.1 ID=mRNA_L-elsbetiae_contig15751.4016.1|Name=mRNA_L-elsbetiae_contig15751.4016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig15751:2154..3142- (Laminarionema elsbetiae ELsaHSoW15)back to top |