mRNA_L-elsbetiae_contig15741.4009.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15741.4009.1
Unique NamemRNA_L-elsbetiae_contig15741.4009.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15741.4009.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 2.970e-39
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1
Query:   25 QGSILKPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVEKKV 252
            QGSIL PREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFP+FFPSTYTDRRQNLLKMYTEVEKKV
Sbjct:  504 QGSILNPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 579          
BLAST of mRNA_L-elsbetiae_contig15741.4009.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 8.390e-38
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1
Query:   25 QGSILKPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVEKKV 252
            QGSIL PREVRTLRRTAKDCVTFIPFV+ILI PL+PVGHVLVFSFIQRFFP+FFPSTYTDRRQNLLKMYTEVEKKV
Sbjct:  687 QGSILNPREVRTLRRTAKDCVTFIPFVVILIFPLTPVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 762          
BLAST of mRNA_L-elsbetiae_contig15741.4009.1 vs. uniprot
Match: A0A836CA55_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA55_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.770e-32
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    7 IMFVGK--QGSILKPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVEK 246
            +  VGK  QG  LKPREVRTLRR+ KD +T IP +IILI+PLSPVGHVLVFSFIQR+FPDFFPST+T+RRQNLLKMY EVEK
Sbjct:  188 LALVGKAIQGYTLKPREVRTLRRSGKDLLTLIPTIIILILPLSPVGHVLVFSFIQRYFPDFFPSTFTERRQNLLKMYEEVEK 269          
BLAST of mRNA_L-elsbetiae_contig15741.4009.1 vs. uniprot
Match: L1IDU4_GUITC (LETM1 domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IDU4_GUITC)

HSP 1 Score: 123 bits (309), Expect = 6.690e-31
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    1 IKIMFVGKQGSILKPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVE 243
            ++++     G  L+PREVRTLRRTAKD +TFIPF+IIL+IPLSPVGHVLVFSFIQRFFPDFFP+ YTDRRQNL+++Y  VE
Sbjct:  613 VRLIIKAALGDTLQPREVRTLRRTAKDLITFIPFIIILLIPLSPVGHVLVFSFIQRFFPDFFPTPYTDRRQNLMRIYQSVE 693          
BLAST of mRNA_L-elsbetiae_contig15741.4009.1 vs. uniprot
Match: A0A7S1R4U4_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R4U4_ALECA)

HSP 1 Score: 112 bits (281), Expect = 1.900e-30
Identity = 51/68 (75.00%), Postives = 65/68 (95.59%), Query Frame = 1
Query:   37 LKPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEV 240
            LKPREVR L+RTAKD VTF+PF+IILIIP++P+GHVLVFSFIQ+FFPDFFPST+T+RRQN++K+Y ++
Sbjct:   39 LKPREVRALQRTAKDVVTFVPFLIILIIPMTPIGHVLVFSFIQKFFPDFFPSTFTERRQNVVKIYQDI 106          
BLAST of mRNA_L-elsbetiae_contig15741.4009.1 vs. uniprot
Match: A0A7S2SGM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGM0_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.870e-29
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    7 IMFVGK--QGSILKPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEV 240
            +  +GK  QG+ L PRE RTLRRTAKD VT +PFVIIL+IPLSPVGHVLVFSFIQR FPDF PSTYT+RRQNL+K+Y  +
Sbjct:  267 VSLLGKAVQGTTLAPREARTLRRTAKDLVTLVPFVIILLIPLSPVGHVLVFSFIQRVFPDFMPSTYTERRQNLMKLYEAI 346          
BLAST of mRNA_L-elsbetiae_contig15741.4009.1 vs. uniprot
Match: A0A7S0U8H3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U8H3_HEMAN)

HSP 1 Score: 118 bits (295), Expect = 3.350e-29
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   25 QGSILKPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVE 243
            +G  L PREVRTLRR  KD  TFIPF+IILIIPLSPVGHVLVFSFIQRFFPDFFPS YTDRRQ LL+MY  VE
Sbjct:  432 RGQTLSPREVRTLRRAFKDTTTFIPFIIILIIPLSPVGHVLVFSFIQRFFPDFFPSPYTDRRQKLLRMYQAVE 504          
BLAST of mRNA_L-elsbetiae_contig15741.4009.1 vs. uniprot
Match: A0A7S1NU99_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NU99_9EUGL)

HSP 1 Score: 118 bits (296), Expect = 3.900e-29
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 1
Query:   25 QGSILKPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVEKK 249
            +G  LK REVRT+RRT KD +TFIP VIIL+IPLSP+GHVLVFSFIQRFFP+FFPS+++DRRQNLLKMY E+EKK
Sbjct:  657 EGYTLKAREVRTVRRTMKDFLTFIPTVIILLIPLSPIGHVLVFSFIQRFFPEFFPSSFSDRRQNLLKMYEEIEKK 731          
BLAST of mRNA_L-elsbetiae_contig15741.4009.1 vs. uniprot
Match: A0A4D9D1V1_9STRA (LETM1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.350e-28
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   25 QGSILKPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVEKK 249
            QG  LKPREVRTL+RTAKD +T IPF IILI PL+P+GHVLVFS IQR FPDFFPST+T+RRQNL KMY E++KK
Sbjct:  640 QGYTLKPREVRTLQRTAKDLLTLIPFTIILIFPLTPIGHVLVFSLIQRIFPDFFPSTFTERRQNLSKMYDEIDKK 714          
BLAST of mRNA_L-elsbetiae_contig15741.4009.1 vs. uniprot
Match: A0A7S2X822_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2X822_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 1.540e-28
Identity = 51/75 (68.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   28 GSILKPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVEKKV 252
            G  LKPRE R L+RTAKD +T +PF IIL+IPL+PVGHVLVFS IQ+FFPDF+PS YT+RRQNL+++Y E+E+K+
Sbjct:   99 GDTLKPREARMLQRTAKDLLTLLPFTIILLIPLTPVGHVLVFSAIQKFFPDFYPSPYTERRQNLVRLYQEIEQKL 173          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15741.4009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP03_ECTSI2.970e-3997.37LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LQ87_9PHAE8.390e-3893.42LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CA55_9STRA1.770e-3276.83LETM1 domain-containing protein n=1 Tax=Tribonema ... [more]
L1IDU4_GUITC6.690e-3171.60LETM1 domain-containing protein n=2 Tax=Guillardia... [more]
A0A7S1R4U4_ALECA1.900e-3075.00Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S2SGM0_9STRA1.870e-2972.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0U8H3_HEMAN3.350e-2980.82Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1NU99_9EUGL3.900e-2977.33Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A4D9D1V1_9STRA1.350e-2876.00LETM1 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S2X822_9EUKA1.540e-2868.00Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15741contigL-elsbetiae_contig15741:142..1219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue1.1e-32
Seed eggNOG ortholog2880.D8LP03
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.calcium export from the mitochondrion
EggNOG OGsKOG1043@1,KOG1043@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size264
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15741.4009.1prot_L-elsbetiae_contig15741.4009.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15741 151..1219 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.6795342-UTR-L-elsbetiae_contig15741:141..1501622815646.6795342-UTR-L-elsbetiae_contig15741:141..150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15741 142..150 +
1691683012.1861389-UTR-L-elsbetiae_contig15741:141..1501691683012.1861389-UTR-L-elsbetiae_contig15741:141..150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15741 142..150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.693833-CDS-L-elsbetiae_contig15741:150..2741622815646.693833-CDS-L-elsbetiae_contig15741:150..274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15741 151..274 +
1691683012.195955-CDS-L-elsbetiae_contig15741:150..2741691683012.195955-CDS-L-elsbetiae_contig15741:150..274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15741 151..274 +
1622815646.7058456-CDS-L-elsbetiae_contig15741:1088..12191622815646.7058456-CDS-L-elsbetiae_contig15741:1088..1219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15741 1089..1219 +
1691683012.2041166-CDS-L-elsbetiae_contig15741:1088..12191691683012.2041166-CDS-L-elsbetiae_contig15741:1088..1219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15741 1089..1219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15741.4009.1

>prot_L-elsbetiae_contig15741.4009.1 ID=prot_L-elsbetiae_contig15741.4009.1|Name=mRNA_L-elsbetiae_contig15741.4009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MFVGKQGSILKPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSF
IQRFFPDFFPSTYTDRRQNLLKMYTEVEKKVRRAQ
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mRNA from alignment at L-elsbetiae_contig15741:142..1219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15741.4009.1 ID=mRNA_L-elsbetiae_contig15741.4009.1|Name=mRNA_L-elsbetiae_contig15741.4009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1078bp|location=Sequence derived from alignment at L-elsbetiae_contig15741:142..1219+ (Laminarionema elsbetiae ELsaHSoW15)
ATTAAAATCATGTTCGTTGGCAAGCAGGGGTCCATCCTGAAGCCGAGAGA GGTCCGGACGCTGCGGCGCACGGCCAAGGACTGCGTCACTTTCATCCCCT TCGTCATCATCCTCATCATCCCCCTCTCGCCCGGTAAGGCCCTTTTTTTT GGTGTGTTTTTTTGTTTTGTCTTGTTTTTTGTTGTGTTTTTTGTTGTGTT TTTTGTTTTGTTTTGTTTTGTTTAGTTTGTGTGCGAAACGCCAGCGGTCT CGTCGTTAATGTCAGCAGTCTACATACATACGTCCAGTCTGCGAAAATGT CGTTCCAGAGGGACAACTGTTGTAGGCATACTAACCCCTACTTTATATTG TTTTTTTATTTTCATTGTGTATATACCGTAGTCATGCGAAGGTTCGCACC CCCGTGATAGCATTTTTCTAAAGCGTATTTCTCCACAACCTTCGCATGAT TACGGTAGTCTACATATTGTGTGTACATGCCATTGTGATGAACTCTTCGC TCCATTAATAACTCAGCGTGCACCAAGCAAGGTAAAAGAAGTGAAAACGC ACATACATGCAAAGTGCATTTGTTTTTCGTCTCTCGTGTGCTTGCTGCCT TGGTCTTTTTTGTGGCAGGAGGTGACTGCCTGTTTGGCACAAATTGATTT GCATCGCTGACCACAGATACCTACAACAGCGTTCTCCCACATGATACCTA CATACTCGAAATCATGCTTGCAGAGCGCGAACGTTTTCAAACATGTCACG TCATGAGCCACGCTGTCTCCGACGACTATATATACTCACTTTGCTCCACG CTCCCTCCCCAACCCCCTCGACGGTTCCTATTCTTCCCCCTGTTTTTCTC TGCTCTTCTCTCTGTCCTTGCCCGCCGTCCTTGGGATCGGGGTGGAAACG AATCGCGACAAACAAACAAACAAACAAACAAACAAAAAACATTACAGTTG GGCACGTGTTGGTGTTCTCGTTCATCCAGAGGTTCTTCCCGGACTTTTTT CCGTCTACCTACACGGACCGCCGCCAGAACCTGCTCAAGATGTACACCGA GGTCGAGAAGAAGGTGAGACGGGCTCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15741:142..1219+

>mRNA_L-elsbetiae_contig15741.4009.1 ID=mRNA_L-elsbetiae_contig15741.4009.1|Name=mRNA_L-elsbetiae_contig15741.4009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig15741:142..1219+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGTTGGCAAGCAGGGGTCCATCCTGAAGCCGAGAGAGGTCCGGAC
GCTGCGGCGCACGGCCAAGGACTGCGTCACTTTCATCCCCTTCGTCATCA
TCCTCATCATCCCCCTCTCGCCCGATGTTCGTTGGCAAGCAGGGGTCCAT
CCTGAAGCCGAGAGAGGTCCGGACGCTGCGGCGCACGGCCAAGGACTGCG
TCACTTTCATCCCCTTCGTCATCATCCTCATCATCCCCCTCTCGCCCGTT
GGGCACGTGTTGGTGTTCTCGTTCATCCAGAGGTTCTTCCCGGACTTTTT
TCCGTCTACCTACACGGACCGCCGCCAGAACCTGCTCAAGATGTACACCG
AGGTCGAGAAGAAGGTGAGACGGGCTCAATTGGGCACGTGTTGGTGTTCT
CGTTCATCCAGAGGTTCTTCCCGGACTTTTTTCCGTCTACCTACACGGAC
CGCCGCCAGAACCTGCTCAAGATGTACACCGAGGTCGAGAAGAAGGTGAG
ACGGGCTCAA
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