mRNA_L-elsbetiae_contig10.40.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10.40.1
Unique NamemRNA_L-elsbetiae_contig10.40.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10.40.1 vs. uniprot
Match: A0A6B7EW12_9PHAE (Ferredoxin:thioredoxin reductase n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EW12_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 6.490e-86
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 1
Query:    1 MNLKKTTKLTQNKKMDKGTYIKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKDKYTLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNLIYNLYT 387
            M+LKKTTKL Q KK+DKGTYIKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYK+KY LPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNLIYNLYT
Sbjct:    1 MDLKKTTKLAQ-KKIDKGTYIKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKEKYALPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNLIYNLYT 128          
BLAST of mRNA_L-elsbetiae_contig10.40.1 vs. uniprot
Match: D1J7D0_ECTSI (Ferredoxin:thioredoxin reductase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7D0_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 4.900e-79
Identity = 111/129 (86.05%), Postives = 121/129 (93.80%), Query Frame = 1
Query:    1 MNLKKTTKLTQNKKMDKGTYIKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKDKYTLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNLIYNLYT 387
            M LKKT K+T N K+DKGT IKEMH F+ELYA+KTNTFFC+DPSITSVI+AGLADYK+KY LPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRP++S +SQTQKIPLSTVYHNLIYNLYT
Sbjct:    1 MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNKYDLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPENSESSQTQKIPLSTVYHNLIYNLYT 129          
BLAST of mRNA_L-elsbetiae_contig10.40.1 vs. uniprot
Match: A0A5A4MHM1_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MHM1_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 5.730e-78
Identity = 109/129 (84.50%), Postives = 120/129 (93.02%), Query Frame = 1
Query:    1 MNLKKTTKLTQNKKMDKGTYIKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKDKYTLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNLIYNLYT 387
            M+LK T K+ Q  K++KGT IKEMH F+ELYA+KTNTFFCLDPSITSVII+GLADYK++Y LPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRP+D +ASQTQKIPLSTVYHNLIYNLYT
Sbjct:    1 MDLKNTKKVAQKNKLEKGTRIKEMHNFAELYAKKTNTFFCLDPSITSVIISGLADYKERYELPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPEDPDASQTQKIPLSTVYHNLIYNLYT 129          
BLAST of mRNA_L-elsbetiae_contig10.40.1 vs. uniprot
Match: A0A1I9LVX2_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX2_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 5.500e-76
Identity = 109/129 (84.50%), Postives = 117/129 (90.70%), Query Frame = 1
Query:    1 MNLKKTTKLTQNKKMDKGTYIKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKDKYTLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNLIYNLYT 387
            M LKK    TQN K++K T +KEMH F+ELYA+KTNTFFCLDPSITSVIIAGLADYK+KY LPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRP+DS ASQTQKI LSTVY+NLIYNLYT
Sbjct:    1 MELKKIKNTTQNNKIEKSTRLKEMHNFAELYAKKTNTFFCLDPSITSVIIAGLADYKNKYKLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPEDSEASQTQKISLSTVYNNLIYNLYT 129          
BLAST of mRNA_L-elsbetiae_contig10.40.1 vs. uniprot
Match: A0A0S0GLW6_COSCS (Ferredoxin-thioredoxin reductase, catalytic chain n=28 Tax=Laminariales TaxID=2886 RepID=A0A0S0GLW6_COSCS)

HSP 1 Score: 183 bits (465), Expect = 9.730e-58
Identity = 79/103 (76.70%), Postives = 95/103 (92.23%), Query Frame = 1
Query:   61 IKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKDKYTLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNL 369
            +KEMH F+E+YA++TNTFFCLDPSITSVII GLA YKD+Y +PLCPCRNFRSE+ EIELN+W+CPCV+MRERKECHCKLFV+P+DS+AS+TQKI L T+Y NL
Sbjct:   13 LKEMHNFAEIYAKQTNTFFCLDPSITSVIITGLATYKDQYGVPLCPCRNFRSEKAEIELNYWVCPCVSMRERKECHCKLFVQPNDSSASETQKISLDTIYKNL 115          
BLAST of mRNA_L-elsbetiae_contig10.40.1 vs. uniprot
Match: A0A8F0JXX6_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JXX6_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.290e-56
Identity = 77/103 (74.76%), Postives = 95/103 (92.23%), Query Frame = 1
Query:   61 IKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKDKYTLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNL 369
            +KEMHTF+++YA++TNTFFCLDPSITSVII GLA YKDK+ +PLCPCRNFRSE+ EIELN+W+CPCV+MRERKECHCKLFV+P+DS+AS++QKI L T+Y  L
Sbjct:   13 LKEMHTFAQIYAKQTNTFFCLDPSITSVIITGLATYKDKHGVPLCPCRNFRSEKAEIELNYWVCPCVSMRERKECHCKLFVQPNDSSASKSQKISLDTIYETL 115          
BLAST of mRNA_L-elsbetiae_contig10.40.1 vs. uniprot
Match: A0A8F0FAQ0_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAQ0_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 9.910e-51
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 1
Query:   61 IKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKDKYTLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNL 369
            +  MH F+E YA++TNTFFC DPSITS++I GLA YKDKY +PLCPCRN+ +E  EIELN+WICPCVAMRERKECHCKLF+ PDD   S+ QKI +  +Y+NL
Sbjct:   13 VNAMHKFAETYAKQTNTFFCFDPSITSIVITGLATYKDKYGVPLCPCRNYYNEEAEIELNYWICPCVAMRERKECHCKLFINPDDEYVSENQKIDIDIIYNNL 115          
BLAST of mRNA_L-elsbetiae_contig10.40.1 vs. uniprot
Match: A0A2R4QPY4_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY4_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 5.720e-50
Identity = 71/103 (68.93%), Postives = 88/103 (85.44%), Query Frame = 1
Query:   61 IKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKDKYTLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNL 369
            IK M  F+E YA++TNTFF +DPSITS+II GLA+YKD+Y +PLCPCRN+ +E  EIELN+WICPCV+MRERKECHC+LFV+P +S ASQ+QKI L T+Y NL
Sbjct:   13 IKAMQHFAETYAKQTNTFFSIDPSITSIIITGLANYKDRYKVPLCPCRNYHNEEAEIELNYWICPCVSMRERKECHCRLFVQPTESYASQSQKISLDTIYKNL 115          
BLAST of mRNA_L-elsbetiae_contig10.40.1 vs. uniprot
Match: A0A141BSI2_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSI2_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.330e-49
Identity = 70/103 (67.96%), Postives = 88/103 (85.44%), Query Frame = 1
Query:   61 IKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKDKYTLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNL 369
            IK M  F+E YA++TNTFF LDPSITS+II GLA YKD++ +PLCPCRN+ +E  EIELN+WICPC++MRERKECHCKLFV+P +S AS++QKI L T+Y+NL
Sbjct:   13 IKAMQQFAETYAKQTNTFFSLDPSITSIIITGLATYKDRHKVPLCPCRNYHNEEAEIELNYWICPCISMRERKECHCKLFVQPTESYASKSQKIDLDTIYNNL 115          
BLAST of mRNA_L-elsbetiae_contig10.40.1 vs. uniprot
Match: A0A8F0F757_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F757_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.510e-47
Identity = 66/103 (64.08%), Postives = 85/103 (82.52%), Query Frame = 1
Query:   61 IKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKDKYTLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNL 369
            ++ MH F++ Y ++TNTFFCLDP+ITSV+I GLA+YK KY +PLCPCRN+ +E+ EI+LN+WICPCVAMRERKECHCKLF+ PD    S+ Q+I + TVY NL
Sbjct:   17 LESMHKFAQNYTKQTNTFFCLDPAITSVVITGLANYKSKYGVPLCPCRNYHNEKDEIDLNYWICPCVAMRERKECHCKLFLTPDQKFVSEKQEIDIETVYKNL 119          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EW12_9PHAE6.490e-8695.35Ferredoxin:thioredoxin reductase n=1 Tax=Cladosiph... [more]
D1J7D0_ECTSI4.900e-7986.05Ferredoxin:thioredoxin reductase n=2 Tax=Ectocarpu... [more]
A0A5A4MHM1_9PHAE5.730e-7884.50Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A1I9LVX2_9PHAE5.500e-7684.50Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A0S0GLW6_COSCS9.730e-5876.70Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A8F0JXX6_9PHAE2.290e-5674.76Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A8F0FAQ0_9PHAE9.910e-5166.99Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A2R4QPY4_9PHAE5.720e-5068.93Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A141BSI2_9PHAE2.330e-4967.96Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A8F0F757_9PHAE2.510e-4764.08Ferredoxin-thioredoxin reductase, catalytic chain ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:75277..75669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.7
Seed ortholog evalue3.2e-60
Seed eggNOG ortholog2880.D1J7D0
Preferred nameFtrB
KEGG koko:K17892
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0016491,GO:0016730,GO:0022900,GO:0030385,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114
EggNOG free text desc.ferredoxin:thioredoxin reductase activity
EggNOG OGs2RZRI@2759,COG4802@1
EC1.8.7.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size393
Cds size393
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815233.181692-CDS-L-elsbetiae_contig10:75276..756691622815233.181692-CDS-L-elsbetiae_contig10:75276..75669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 75277..75669 +
1691682784.5061178-CDS-L-elsbetiae_contig10:75276..756691691682784.5061178-CDS-L-elsbetiae_contig10:75276..75669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 75277..75669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.40.1prot_L-elsbetiae_contig10.40.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10 75277..75669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10.40.1

>prot_L-elsbetiae_contig10.40.1 ID=prot_L-elsbetiae_contig10.40.1|Name=mRNA_L-elsbetiae_contig10.40.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MNLKKTTKLTQNKKMDKGTYIKEMHTFSELYAQKTNTFFCLDPSITSVII
AGLADYKDKYTLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLF
VRPDDSNASQTQKIPLSTVYHNLIYNLYTL*
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mRNA from alignment at L-elsbetiae_contig10:75277..75669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10.40.1 ID=mRNA_L-elsbetiae_contig10.40.1|Name=mRNA_L-elsbetiae_contig10.40.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=393bp|location=Sequence derived from alignment at L-elsbetiae_contig10:75277..75669+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATTTAAAAAAGACTACAAAATTAACTCAGAATAAAAAAATGGATAA AGGCACTTATATAAAAGAAATGCATACTTTCTCAGAACTTTATGCTCAAA AAACTAATACATTTTTTTGTTTAGATCCTTCAATTACTTCAGTAATTATC GCAGGGTTAGCTGACTATAAAGATAAGTATACACTTCCCCTATGTCCCTG TAGAAATTTCCGAAGTGAAAGAGTTGAAATTGAATTAAATTTTTGGATAT GTCCTTGTGTTGCTATGCGTGAAAGAAAAGAATGTCATTGCAAATTATTT GTAAGACCTGATGATTCAAATGCCTCACAAACTCAAAAAATCCCCCTAAG CACAGTTTATCATAATTTGATATACAACCTTTATACTTTATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10:75277..75669+

>mRNA_L-elsbetiae_contig10.40.1 ID=mRNA_L-elsbetiae_contig10.40.1|Name=mRNA_L-elsbetiae_contig10.40.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig10:75277..75669+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATTTAAAAAAGACTACAAAATTAACTCAGAATAAAAAAATGGATAA
AGGCACTTATATAAAAGAAATGCATACTTTCTCAGAACTTTATGCTCAAA
AAACTAATACATTTTTTTGTTTAGATCCTTCAATTACTTCAGTAATTATC
GCAGGGTTAGCTGACTATAAAGATAAGTATACACTTCCCCTATGTCCCTG
TAGAAATTTCCGAAGTGAAAGAGTTGAAATTGAATTAAATTTTTGGATAT
GTCCTTGTGTTGCTATGCGTGAAAGAAAAGAATGTCATTGCAAATTATTT
GTAAGACCTGATGATTCAAATGCCTCACAAACTCAAAAAATCCCCCTAAG
CACAGTTTATCATAATTTGATATACAACCTTTATACTTTATAAATGAATT
TAAAAAAGACTACAAAATTAACTCAGAATAAAAAAATGGATAAAGGCACT
TATATAAAAGAAATGCATACTTTCTCAGAACTTTATGCTCAAAAAACTAA
TACATTTTTTTGTTTAGATCCTTCAATTACTTCAGTAATTATCGCAGGGT
TAGCTGACTATAAAGATAAGTATACACTTCCCCTATGTCCCTGTAGAAAT
TTCCGAAGTGAAAGAGTTGAAATTGAATTAAATTTTTGGATATGTCCTTG
TGTTGCTATGCGTGAAAGAAAAGAATGTCATTGCAAATTATTTGTAAGAC
CTGATGATTCAAATGCCTCACAAACTCAAAAAATCCCCCTAAGCACAGTT
TATCATAATTTGATATACAACCTTTATACTTTATAA
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