mRNA_L-elsbetiae_contig1572.3995.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1572.3995.1 vs. uniprot
Match: A0A6H5L1T7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T7_9PHAE) HSP 1 Score: 279 bits (714), Expect = 1.720e-75 Identity = 360/577 (62.39%), Postives = 384/577 (66.55%), Query Frame = 1 Query: 1 MNAMSRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSRERTTATYEVAKQAVDELAQLETRFRARLERNKEKRSGILGIEARLLGNRRPALDARAGGGAAATGTSPAVAGALLRAFGQEGMGAGGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWNIPFSQQGYAXXXXXXXXXXXXXXXXXXXXXXXTGXXXXXXXXXXXLQSHQXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------AQAQFPQQLSTTAPSSVTPSGAVSLSDKAAAPAPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-----------------LGVKAAXXXXXX----SGNGDVAGVGVG--ARAQASYLCTPSGQTHNPYW-YHPHHAAVXXXXX------------------ATADQPARGGYIDFGAAAAHGYHPSAHVVGGVAGFPHLGMSHPVQQQWMHQRFAPG 1509 MNA+SRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHS ERTTATYEVAKQAV+ELA+LE RF+ARLERNKEKR+GILGIEARLLGNR P++DA A GG A G S V G+ + AFGQ M A G A XXXXXXXXXXXXXXXXXXXXXX WNIP S GYA XXXXXXXXXXXXXXXXXXX XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXX AQA+F Q S + + + ++ A+ PA +AXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXX LG+ A G G G+G ARAQASYLCTPSG+THNPYW YHPHHA XXXXX A GGY+DFGAAAAHGYHPS H G VAGFPHLGMSHP+QQQW+HQ +A G Sbjct: 4 MNAISRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGILGIEARLLGNRHPSIDAAAIGGDGAGGASSGVGGSAMHAFGQGEMVAQGAAGXXXXXXXXXXXXXXXXXXXXXXA--------WNIPLSP-GYATAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQARFSQFASANTAQAGKTLASTNPNNSASLPAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIEGGEGGSKRSPEMNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASERSLGSDKNSSAXXXXXXXXXXXGLGIARAASVSAGLRPGPGAGPEGGIGSAGAARAQASYLCTPSGRTHNPYWSYHPHHAXXXXXXXXXXXXXXXXXXXXXGPTGAGTRGAGAGGYMDFGAAAAHGYHPS-HAQG-VAGFPHLGMSHPMQQQWLHQHYAVG 569
BLAST of mRNA_L-elsbetiae_contig1572.3995.1 vs. uniprot
Match: D7FME2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME2_ECTSI) HSP 1 Score: 213 bits (542), Expect = 1.400e-61 Identity = 107/113 (94.69%), Postives = 111/113 (98.23%), Query Frame = 1 Query: 1 MNAMSRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSRERTTATYEVAKQAVDELAQLETRFRARLERNKEKRSGILGIE 339 MNAMSRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHS ERTTATYEVAKQAV+ELA+LE RF+ARLERNKEKR+GILGIE Sbjct: 4 MNAMSRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGILGIE 116
BLAST of mRNA_L-elsbetiae_contig1572.3995.1 vs. uniprot
Match: A0A836CQN8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQN8_9STRA) HSP 1 Score: 140 bits (352), Expect = 2.840e-35 Identity = 67/104 (64.42%), Postives = 86/104 (82.69%), Query Frame = 1 Query: 16 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSRERTTATYEVAKQAVDELAQLETRFRARLERNKEKRSGI 327 R+GKW+ EEEA TARIIHYF+ GVLQLP+GTTLR +LA+KL CDPMRITKKFTG+ CLGKRVYHS ERT AT +++ ++LA LE RF ++LER +++R+ + Sbjct: 18 RRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLERRRDRRASL 121
BLAST of mRNA_L-elsbetiae_contig1572.3995.1 vs. uniprot
Match: A0A6V1Q146_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q146_HETAK) HSP 1 Score: 145 bits (367), Expect = 8.250e-35 Identity = 76/125 (60.80%), Postives = 93/125 (74.40%), Query Frame = 1 Query: 16 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSRERTTATYEVAKQAVDELAQLETRFRARLERNKEKRSGILGIEARLL--GN--RRPALDA 378 RKGKWT EEE T++IIHYF+ G+LQLP+GTTLR+YLA+KL+CDPMRITKKFTG+ CLGKRVYH + AT+ QA+DEL+ LE RF+ RLER K+K L E +L GN PA+DA Sbjct: 98 RKGKWTVEEEEFTSKIIHYFNTGILQLPEGTTLRSYLAEKLNCDPMRITKKFTGSQCLGKRVYHQGDVVQATHAQVVQALDELSHLERRFKLRLEREKQKTRSDLDAETTVLHCGNVVSTPAIDA 222
BLAST of mRNA_L-elsbetiae_contig1572.3995.1 vs. uniprot
Match: A0A835Z4F5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F5_9STRA) HSP 1 Score: 134 bits (338), Expect = 9.710e-34 Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 1 Query: 16 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSRERTTATYEVAKQAVDELAQLETRFRA 291 R+GKW+SEEEA T RIIHYF+ GVLQLP+GTTLRAYLA+KL CDPMRITKKFTG++CLGKRVYHS ERT A+ + + ++L+QLE RF A Sbjct: 2 RRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLA 93
BLAST of mRNA_L-elsbetiae_contig1572.3995.1 vs. uniprot
Match: A0A7S1UUW2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UUW2_9STRA) HSP 1 Score: 127 bits (320), Expect = 3.010e-27 Identity = 63/95 (66.32%), Postives = 75/95 (78.95%), Query Frame = 1 Query: 16 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSRERTTATYEVAKQAVDELAQLETRFRARLE 300 RKGKWT EEE T+RIIH+FS GVL LP+GTTLR+YLA+KL+CDPMRITKKF G +CLGKRVYH +R+ T + A ELA+LE RFR R+E Sbjct: 200 RKGKWTVEEEEYTSRIIHHFSTGVLTLPEGTTLRSYLAEKLNCDPMRITKKFAGASCLGKRVYHLCDRSPGTAADIEMAKAELARLEQRFRLRVE 294
BLAST of mRNA_L-elsbetiae_contig1572.3995.1 vs. uniprot
Match: A0A7S1XJQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJQ1_9STRA) HSP 1 Score: 120 bits (302), Expect = 4.980e-26 Identity = 64/129 (49.61%), Postives = 86/129 (66.67%), Query Frame = 1 Query: 16 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSRERTTATYEVAKQAVDELAQLETRFRARLERNKEKR----------SGILGIEARLLGNRRPAL 372 RKGKWT+EEEA T R+IH F+ G+LQ+ GTTLR+YL++KL+CDPMRITKK+ G++C+GKR++ ERT E +Q+ ELA LE FRA+LE ++ R G GI A +G P+L Sbjct: 27 RKGKWTAEEEAYTERVIHDFNEGLLQVAAGTTLRSYLSEKLNCDPMRITKKYAGSSCIGKRIFAPCERTPENIERGRQSAKELADLEAAFRAKLESSRSSRVPNGVGPRFNPGAKGIAAFAMGASFPSL 155
BLAST of mRNA_L-elsbetiae_contig1572.3995.1 vs. uniprot
Match: A0A1E7EJF2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJF2_9STRA) HSP 1 Score: 123 bits (309), Expect = 6.480e-26 Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 1 Query: 16 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSRERTTATYEVAKQAVDELAQLETRFRARLE 300 RKGKWT EEE T+RII YFS G+L LPDG TLR+YLA KL+CDPMRITKKFTG CLG+R YH R+R A++ + A EL LE RFR R+E Sbjct: 57 RKGKWTIEEEEYTSRIIQYFSTGLLTLPDGATLRSYLADKLNCDPMRITKKFTGACCLGRRAYHLRDRPRASFAEVEMANLELLHLERRFRLRVE 151
BLAST of mRNA_L-elsbetiae_contig1572.3995.1 vs. uniprot
Match: A0A7S1BZD1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZD1_9STRA) HSP 1 Score: 124 bits (311), Expect = 1.540e-25 Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 1 Query: 16 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSRERTTATYEVAKQAVDELAQLETRFRARLE 300 RKGKWT+EEE T+RIIHYFS G+L LP+GTTLR+YL++ L CDPMRITKKF G +CLGKRVY +R+ AT + A ELA LE RFRA+++ Sbjct: 216 RKGKWTAEEEEFTSRIIHYFSTGLLTLPEGTTLRSYLSETLSCDPMRITKKFAGASCLGKRVYRLCDRSKATANDNEMAKKELAHLEQRFRAKVQ 310
BLAST of mRNA_L-elsbetiae_contig1572.3995.1 vs. uniprot
Match: A0A7S2WH73_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH73_9STRA) HSP 1 Score: 120 bits (301), Expect = 6.260e-25 Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 1 Query: 16 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSRERTTATYEVAKQAVDELAQLETRFRARLERNKEKRSGILGIEARLL 351 RKGKWT EEE +R+I +F++G+L LP+GTTLRAYLA KL+CDPMRITKKFTG++CLGKRVY R+ T + A +L LE RF RL+R + + +L +AR + Sbjct: 78 RKGKWTPEEEDFVSRLIEHFNMGLLMLPEGTTLRAYLADKLNCDPMRITKKFTGSDCLGKRVYQPRKVTNMAAQEMDVARQDLEHLERRFLLRLQRANDADACMLDFDARFV 189 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1572.3995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1572.3995.1 >prot_L-elsbetiae_contig1572.3995.1 ID=prot_L-elsbetiae_contig1572.3995.1|Name=mRNA_L-elsbetiae_contig1572.3995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=846bp MNAMSRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPback to top mRNA from alignment at L-elsbetiae_contig1572:287..4513- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1572.3995.1 ID=mRNA_L-elsbetiae_contig1572.3995.1|Name=mRNA_L-elsbetiae_contig1572.3995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4227bp|location=Sequence derived from alignment at L-elsbetiae_contig1572:287..4513- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1572:287..4513- >mRNA_L-elsbetiae_contig1572.3995.1 ID=mRNA_L-elsbetiae_contig1572.3995.1|Name=mRNA_L-elsbetiae_contig1572.3995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5076bp|location=Sequence derived from alignment at L-elsbetiae_contig1572:287..4513- (Laminarionema elsbetiae ELsaHSoW15)back to top |