mRNA_L-elsbetiae_contig15713.3994.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15713.3994.1
Unique NamemRNA_L-elsbetiae_contig15713.3994.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15713.3994.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 9.880e-7
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  349 SKCHHVGCTKQSRYGAAGSKKKEFCSEHKKDGMVNISNK 465
            S+C H  CTK+  YG AGSKK+EFCS+H +DGMVN++NK
Sbjct:    2 SQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 40
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BLAST of mRNA_L-elsbetiae_contig15713.3994.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.570e-6
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  349 SKCHHVGCTKQSRYGAAGSKKKEFCSEHKKDGMVNISNK 465
            S+C H  CTK+  YG AGSKK+EFCS+H +DGMVN++NK
Sbjct:   62 SQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 100
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15713.3994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI73_ECTSI9.880e-764.10EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE2.570e-664.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15713contigL-elsbetiae_contig15713:1930..3870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1941
Cds size1596
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15713.3994.1prot_L-elsbetiae_contig15713.3994.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15713 2272..3867 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.4806192-UTR-L-elsbetiae_contig15713:1929..22711622815645.4806192-UTR-L-elsbetiae_contig15713:1929..2271Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15713 1930..2271 +
1691683011.3972008-UTR-L-elsbetiae_contig15713:1929..22711691683011.3972008-UTR-L-elsbetiae_contig15713:1929..2271Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15713 1930..2271 +
1622815645.5083241-UTR-L-elsbetiae_contig15713:3867..38701622815645.5083241-UTR-L-elsbetiae_contig15713:3867..3870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15713 3868..3870 +
1691683011.418728-UTR-L-elsbetiae_contig15713:3867..38701691683011.418728-UTR-L-elsbetiae_contig15713:3867..3870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15713 3868..3870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.4977226-CDS-L-elsbetiae_contig15713:2271..38671622815645.4977226-CDS-L-elsbetiae_contig15713:2271..3867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15713 2272..3867 +
1691683011.4099784-CDS-L-elsbetiae_contig15713:2271..38671691683011.4099784-CDS-L-elsbetiae_contig15713:2271..3867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15713 2272..3867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15713.3994.1

>prot_L-elsbetiae_contig15713.3994.1 ID=prot_L-elsbetiae_contig15713.3994.1|Name=mRNA_L-elsbetiae_contig15713.3994.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=532bp
MPSKCHHVGCTKQSRYGAAGSKKKEFCSEHKKDGMVNISNKKCAHHGCTK
HPAFGAAGTKKPEFCSGHKRDGMVNVRDKRCTHHGCTMRASYGAARTKTA
EFCSKHKKDGMVDVLNKRCVHHGCTKHPNYGVAGTKTAEFCSGHKKDGMV
NVRAKTCTHHGCTTRPSFGAAGTETAEFCSGHKKDGMMNVLNKMCAHHGC
TKHPAFGVAGNKTPEFCSEHKKEGMMDVKNRKCAHHDCTKWPSYGVAGTK
TAEFCSEHKKEGMVDVLSKRCIHHGCTKHPVFGVAGTRTAEFCSKHKRDG
MVNVRAKACTHHGCTTRASYGAAGTETGEFCSGHKKDGMMNVRAKTCTHH
GCTTRASYGAAGTETAEFCCGHKKDGMVDVKNRKYAHHGCTNQSSHGIIG
TTKRKLCGQHAEGDMAHHTPSNYRSSGGARGDSDSKHDRDRVPVDDIGAA
HGAGAGQERKGRASSSEQTEVFSSKRARQAPVDPPAARHPSEKPIVEGPS
PEEDASVSERGNAAVKMEAGAFCIGRRGSWR*
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mRNA from alignment at L-elsbetiae_contig15713:1930..3870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15713.3994.1 ID=mRNA_L-elsbetiae_contig15713.3994.1|Name=mRNA_L-elsbetiae_contig15713.3994.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1941bp|location=Sequence derived from alignment at L-elsbetiae_contig15713:1930..3870+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCGGAAGCCAGTCATCCACTCATAAAGTGGGGCGCCAAAGAGATAGCG
CAGAATCAGATAGTAGTGCACACGTAAAGGCTGAAGGTAATTAGGCCAGC
TGAAGCAGAGCCAAGGAGTCCAGCGCTCGAGTCTGGAGTCTTCGCCACTT
TGCACAGTCCCGCCCGCGAAGTTGATTGGCCCGCTGTCGTGCGCTGGCGC
CGGGAAGGGACGAGACAGGTGTGAAGTTGCGTGCGCTCTAAGGTGGCTGG
GACACAACAAAAAAGTTGAAGAGGGGTAAGACAGAAGACCGACCGCTTAC
TGCTGCCACATTGCCCTCTTGTAGGGTGTTTCAGCGAAGAGGATGCCGAG
CAAGTGTCACCATGTTGGCTGTACCAAGCAGTCGAGGTATGGTGCTGCCG
GCAGCAAGAAGAAGGAGTTCTGCTCTGAACACAAGAAAGATGGGATGGTG
AATATCTCCAACAAGAAGTGCGCCCACCACGGTTGCACCAAGCACCCGGC
CTTTGGTGCTGCCGGCACCAAAAAGCCGGAATTCTGCTCTGGACACAAGA
GGGACGGGATGGTGAATGTCAGGGACAAGAGGTGCACCCACCACGGTTGC
ACCATGCGGGCGAGCTATGGTGCCGCCCGCACCAAAACGGCGGAGTTCTG
CTCAAAACACAAAAAGGATGGGATGGTGGATGTCTTGAACAAGAGGTGCG
TCCACCACGGCTGCACCAAGCACCCGAACTATGGTGTTGCTGGCACCAAA
ACAGCGGAGTTCTGCTCTGGACACAAGAAGGACGGGATGGTGAATGTCAG
GGCCAAGACGTGCACCCACCACGGTTGCACCACGCGGCCGAGCTTTGGTG
CTGCCGGCACCGAAACGGCGGAGTTCTGCTCTGGACACAAGAAGGACGGG
ATGATGAATGTCTTGAACAAGATGTGCGCCCACCACGGGTGCACCAAGCA
CCCGGCCTTCGGTGTTGCCGGCAACAAAACACCGGAGTTCTGCTCTGAAC
ATAAGAAGGAGGGAATGATGGATGTCAAGAACAGGAAGTGCGCCCACCAC
GATTGCACCAAGTGGCCCAGCTATGGTGTTGCTGGCACCAAAACGGCGGA
GTTCTGCTCAGAACACAAGAAGGAGGGGATGGTGGATGTCTTGAGCAAGA
GGTGCATTCACCACGGTTGCACCAAGCACCCGGTCTTTGGTGTTGCCGGC
ACCAGAACAGCGGAGTTCTGCTCAAAACACAAGAGGGACGGGATGGTGAA
TGTCAGGGCCAAGGCGTGCACCCACCACGGTTGCACCACGCGGGCGAGCT
ATGGTGCTGCCGGCACCGAAACAGGGGAGTTCTGCTCTGGACACAAGAAG
GACGGGATGATGAATGTCAGGGCCAAGACGTGCACCCACCACGGTTGCAC
CACGCGGGCGAGCTATGGTGCTGCCGGCACCGAAACGGCGGAGTTCTGCT
GTGGACACAAGAAGGACGGGATGGTGGATGTCAAGAACAGGAAGTACGCC
CACCACGGTTGCACAAACCAGTCGAGCCATGGTATTATCGGCACCACCAA
GAGAAAACTATGTGGCCAACACGCCGAAGGGGACATGGCCCACCACACTC
CATCAAATTACAGGTCCAGCGGTGGAGCACGGGGTGACAGCGACAGCAAG
CATGACCGTGACCGTGTACCAGTGGACGACATTGGCGCCGCCCACGGTGC
TGGTGCCGGTCAAGAGCGGAAGGGCCGGGCTTCCTCGTCCGAGCAGACGG
AGGTCTTCTCGAGCAAGAGAGCCCGCCAGGCTCCCGTTGACCCGCCAGCA
GCTCGACACCCATCGGAAAAACCTATCGTTGAGGGTCCATCTCCGGAGGA
AGATGCTTCGGTGTCGGAGCGAGGCAATGCCGCGGTGAAGATGGAGGCGG
GGGCGTTTTGCATCGGACGGCGAGGGAGCTGGAGGTGAGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15713:1930..3870+

>mRNA_L-elsbetiae_contig15713.3994.1 ID=mRNA_L-elsbetiae_contig15713.3994.1|Name=mRNA_L-elsbetiae_contig15713.3994.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3192bp|location=Sequence derived from alignment at L-elsbetiae_contig15713:1930..3870+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGAGCAAGTGTCACCATGTTGGCTGTACCAAGCAGTCGAGGTATGG
TGCTGCCGGCAGCAAGAAGAAGGAGTTCTGCTCTGAACACAAGAAAGATG
GGATGGTGAATATCTCCAACAAGAAGTGCGCCCACCACGGTTGCACCAAG
CACCCGGCCTTTGGTGCTGCCGGCACCAAAAAGCCGGAATTCTGCTCTGG
ACACAAGAGGGACGGGATGGTGAATGTCAGGGACAAGAGGTGCACCCACC
ACGGTTGCACCATGCGGGCGAGCTATGGTGCCGCCCGCACCAAAACGGCG
GAGTTCTGCTCAAAACACAAAAAGGATGGGATGGTGGATGTCTTGAACAA
GAGGTGCGTCCACCACGGCTGCACCAAGCACCCGAACTATGGTGTTGCTG
GCACCAAAACAGCGGAGTTCTGCTCTGGACACAAGAAGGACGGGATGGTG
AATGTCAGGGCCAAGACGTGCACCCACCACGGTTGCACCACGCGGCCGAG
CTTTGGTGCTGCCGGCACCGAAACGGCGGAGTTCTGCTCTGGACACAAGA
AGGACGGGATGATGAATGTCTTGAACAAGATGTGCGCCCACCACGGGTGC
ACCAAGCACCCGGCCTTCGGTGTTGCCGGCAACAAAACACCGGAGTTCTG
CTCTGAACATAAGAAGGAGGGAATGATGGATGTCAAGAACAGGAAGTGCG
CCCACCACGATTGCACCAAGTGGCCCAGCTATGGTGTTGCTGGCACCAAA
ACGGCGGAGTTCTGCTCAGAACACAAGAAGGAGGGGATGGTGGATGTCTT
GAGCAAGAGGTGCATTCACCACGGTTGCACCAAGCACCCGGTCTTTGGTG
TTGCCGGCACCAGAACAGCGGAGTTCTGCTCAAAACACAAGAGGGACGGG
ATGGTGAATGTCAGGGCCAAGGCGTGCACCCACCACGGTTGCACCACGCG
GGCGAGCTATGGTGCTGCCGGCACCGAAACAGGGGAGTTCTGCTCTGGAC
ACAAGAAGGACGGGATGATGAATGTCAGGGCCAAGACGTGCACCCACCAC
GGTTGCACCACGCGGGCGAGCTATGGTGCTGCCGGCACCGAAACGGCGGA
GTTCTGCTGTGGACACAAGAAGGACGGGATGGTGGATGTCAAGAACAGGA
AGTACGCCCACCACGGTTGCACAAACCAGTCGAGCCATGGTATTATCGGC
ACCACCAAGAGAAAACTATGTGGCCAACACGCCGAAGGGGACATGGCCCA
CCACACTCCATCAAATTACAGGTCCAGCGGTGGAGCACGGGGTGACAGCG
ACAGCAAGCATGACCGTGACCGTGTACCAGTGGACGACATTGGCGCCGCC
CACGGTGCTGGTGCCGGTCAAGAGCGGAAGGGCCGGGCTTCCTCGTCCGA
GCAGACGGAGGTCTTCTCGAGCAAGAGAGCCCGCCAGGCTCCCGTTGACC
CGCCAGCAGCTCGACACCCATCGGAAAAACCTATCGTTGAGGGTCCATCT
CCGGAGGAAGATGCTTCGGTGTCGGAGCGAGGCAATGCCGCGGTGAAGAT
GGAGGCGGGGGCGTTTTGCATCGGACGGCGAGGGAGCTGGAGGTGAATGC
CGAGCAAGTGTCACCATGTTGGCTGTACCAAGCAGTCGAGGTATGGTGCT
GCCGGCAGCAAGAAGAAGGAGTTCTGCTCTGAACACAAGAAAGATGGGAT
GGTGAATATCTCCAACAAGAAGTGCGCCCACCACGGTTGCACCAAGCACC
CGGCCTTTGGTGCTGCCGGCACCAAAAAGCCGGAATTCTGCTCTGGACAC
AAGAGGGACGGGATGGTGAATGTCAGGGACAAGAGGTGCACCCACCACGG
TTGCACCATGCGGGCGAGCTATGGTGCCGCCCGCACCAAAACGGCGGAGT
TCTGCTCAAAACACAAAAAGGATGGGATGGTGGATGTCTTGAACAAGAGG
TGCGTCCACCACGGCTGCACCAAGCACCCGAACTATGGTGTTGCTGGCAC
CAAAACAGCGGAGTTCTGCTCTGGACACAAGAAGGACGGGATGGTGAATG
TCAGGGCCAAGACGTGCACCCACCACGGTTGCACCACGCGGCCGAGCTTT
GGTGCTGCCGGCACCGAAACGGCGGAGTTCTGCTCTGGACACAAGAAGGA
CGGGATGATGAATGTCTTGAACAAGATGTGCGCCCACCACGGGTGCACCA
AGCACCCGGCCTTCGGTGTTGCCGGCAACAAAACACCGGAGTTCTGCTCT
GAACATAAGAAGGAGGGAATGATGGATGTCAAGAACAGGAAGTGCGCCCA
CCACGATTGCACCAAGTGGCCCAGCTATGGTGTTGCTGGCACCAAAACGG
CGGAGTTCTGCTCAGAACACAAGAAGGAGGGGATGGTGGATGTCTTGAGC
AAGAGGTGCATTCACCACGGTTGCACCAAGCACCCGGTCTTTGGTGTTGC
CGGCACCAGAACAGCGGAGTTCTGCTCAAAACACAAGAGGGACGGGATGG
TGAATGTCAGGGCCAAGGCGTGCACCCACCACGGTTGCACCACGCGGGCG
AGCTATGGTGCTGCCGGCACCGAAACAGGGGAGTTCTGCTCTGGACACAA
GAAGGACGGGATGATGAATGTCAGGGCCAAGACGTGCACCCACCACGGTT
GCACCACGCGGGCGAGCTATGGTGCTGCCGGCACCGAAACGGCGGAGTTC
TGCTGTGGACACAAGAAGGACGGGATGGTGGATGTCAAGAACAGGAAGTA
CGCCCACCACGGTTGCACAAACCAGTCGAGCCATGGTATTATCGGCACCA
CCAAGAGAAAACTATGTGGCCAACACGCCGAAGGGGACATGGCCCACCAC
ACTCCATCAAATTACAGGTCCAGCGGTGGAGCACGGGGTGACAGCGACAG
CAAGCATGACCGTGACCGTGTACCAGTGGACGACATTGGCGCCGCCCACG
GTGCTGGTGCCGGTCAAGAGCGGAAGGGCCGGGCTTCCTCGTCCGAGCAG
ACGGAGGTCTTCTCGAGCAAGAGAGCCCGCCAGGCTCCCGTTGACCCGCC
AGCAGCTCGACACCCATCGGAAAAACCTATCGTTGAGGGTCCATCTCCGG
AGGAAGATGCTTCGGTGTCGGAGCGAGGCAATGCCGCGGTGAAGATGGAG
GCGGGGGCGTTTTGCATCGGACGGCGAGGGAGCTGGAGGTGA
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