mRNA_L-elsbetiae_contig15710.3993.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15710.3993.1
Unique NamemRNA_L-elsbetiae_contig15710.3993.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15710.3993.1 vs. uniprot
Match: D7G234_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G234_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.010e-35
Identity = 64/85 (75.29%), Postives = 73/85 (85.88%), Query Frame = 1
Query:   28 KVQNIARPSRSLLEIIRESWIEENGSTPSGNADEASQALWESSFNTLPLFTEEDKAYVATMKDKGKEDRGIKAVARRFEEEIIEV 282
            KVQNI RPSRSLLEII+ESWIEENGSTP GNADEASQA+WE + N +PLFTEED A VA  K+KGKEDRG+K +A RFE EI+E+
Sbjct:  173 KVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAINVVPLFTEEDLAVVAEWKEKGKEDRGLKKIAGRFENEILEI 257          
BLAST of mRNA_L-elsbetiae_contig15710.3993.1 vs. uniprot
Match: A0A0F5YGI1_9CYAN (Nuclease subunit of the excinuclease complex n=1 Tax=Limnoraphis robusta CS-951 TaxID=1637645 RepID=A0A0F5YGI1_9CYAN)

HSP 1 Score: 72.8 bits (177), Expect = 5.930e-14
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 KNQNMWGEKVQNIARPSRSLLEIIRESWIEENGSTPSGNADEASQALWESSFNTLPLFTEEDKAYVATMKDKGKEDRGIKAVARRFEEEIIEV 282
            K Q+ +G KVQ I RPSR++LE IR++WI ENGS P GN  +A Q  W  + N  PL TE +KA      D   +++ +K VARR E +++++
Sbjct:   65 KPQDCYGVKVQTIERPSRTILEEIRQAWIAENGSVPIGNEAQAEQ--WNQAINVKPLMTEAEKA-TYEKSDGLDQEKLLKNVARRIEADLLQI 154          
BLAST of mRNA_L-elsbetiae_contig15710.3993.1 vs. uniprot
Match: A0A8K1MS18_9CYAN (GIY-YIG nuclease family protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A8K1MS18_9CYAN)

HSP 1 Score: 72.0 bits (175), Expect = 1.320e-13
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    4 KNQNMWGEKVQNIARPSRSLLEIIRESWIEENGSTPSGNADEASQALWESSFNTLPLFTEEDKAYVATMKDKGKEDRGIKAVARRFEEEIIE 279
            K ++ +  KV+ IARPSR +LE IR+ W++ENG  P GN +  ++A W    +  PL T+E++  +A   D+GK+ + IK VARR +  ++E
Sbjct:   70 KPEDCYSFKVETIARPSRQVLEDIRQHWLQENGMVPPGNGE--AEAEWTQPIDVKPLMTDEERNGLAEALDEGKKTKCIKQVARRIQGNLLE 159          
BLAST of mRNA_L-elsbetiae_contig15710.3993.1 vs. uniprot
Match: A0A6P0Y1X2_9CYAN (GIY-YIG nuclease family protein n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0Y1X2_9CYAN)

HSP 1 Score: 70.5 bits (171), Expect = 4.620e-13
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   10 QNMWGEKVQNIARPSRSLLEIIRESWIEENGSTPSGNADEASQALWESSFNTLPLFTEEDKAYVATMKDKGKEDRGIKAVARRFEEEIIE 279
            Q+ +  K++ IARPSR++LE I++SWIEENG  P GN  E ++  W    +  PL T EDKA    +++   + + +K +ARRFEEEI+E
Sbjct:   67 QSCYWVKIEMIARPSRTILEEIKKSWIEENGFLPIGNDTEENK--WNKPLDVKPLMTAEDKAEYNKLEEIA-QIKLLKKIARRFEEEILE 153          
BLAST of mRNA_L-elsbetiae_contig15710.3993.1 vs. uniprot
Match: A0A6P1ZWW8_9CYAN (GIY-YIG nuclease family protein n=1 Tax=Nodularia sp. (in: Bacteria) TaxID=2047085 RepID=A0A6P1ZWW8_9CYAN)

HSP 1 Score: 69.3 bits (168), Expect = 1.340e-12
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   10 QNMWGEKVQNIARPSRSLLEIIRESWIEENGSTPSGNADEASQALWESSFNTLPLFTEEDKA-YVATMKDKGKEDRGIKAVARRFEEEIIEV 282
            Q  +  KVQ I RPSR++LE I  +W+ ENGS PSGNA++  + +W    N  PL T+E++A Y     D+  E + IK VARR E EI+ V
Sbjct:   67 QKCYWVKVQTIERPSRTVLENIENAWMAENGSVPSGNAND--KEIWTQPINIKPLMTDEEQANYHHPANDELAEIKIIKNVARRVEAEILVV 156          
BLAST of mRNA_L-elsbetiae_contig15710.3993.1 vs. uniprot
Match: A0A0G4GGJ4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GGJ4_VITBC)

HSP 1 Score: 70.1 bits (170), Expect = 1.770e-12
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   28 KVQNIARPSRSLLEIIRESWIEENGSTPSGNADEASQALWESSFNTLPLFTEEDKAYVATMKDKGKEDRGIKAVARRFEEEIIEV 282
            KV +I RP+RSLLE+I++SW++E+G+ P GN     Q LWE   +  PL T+ED+   A  + KGK       VARR+E E  EV
Sbjct:  112 KVHHILRPNRSLLELIKQSWLDESGNIPPGNRP-PDQELWEHPLDIKPLMTDEDRERYAEKEQKGKGFNVYLEVARRYEAEKKEV 195          
BLAST of mRNA_L-elsbetiae_contig15710.3993.1 vs. uniprot
Match: A0A4D9CSA1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSA1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.890e-12
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   19 WGEKVQNIARPSRSLLEIIRESWIEENGSTPSGNADEASQALWESSFNTLPLFTEEDKAYVATMKDKGK-EDRGIKAVARRFEEEIIEV 282
            +G +V +I++P+R LLEI R++W+++ G  P GN +  +Q LWES+ +  PL  E D A + T + K + E+  +K V RRFEE  I V
Sbjct:  156 YGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISV 244          
BLAST of mRNA_L-elsbetiae_contig15710.3993.1 vs. uniprot
Match: K8YTT3_NANGC (Protein atypical group n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YTT3_NANGC)

HSP 1 Score: 70.1 bits (170), Expect = 5.180e-12
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   19 WGEKVQNIARPSRSLLEIIRESWIEENGSTPSGNADEASQALWESSFNTLPLFTEEDKAYVATMKDKGK-EDRGIKAVARRFEEEIIEV 282
            +G +V +I++P+R LLEI R++W+++ G  P GN +  +Q LWES+ +  PL  E D A + T + K + E+  +K V RRFEE  I V
Sbjct:  156 YGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISV 244          
BLAST of mRNA_L-elsbetiae_contig15710.3993.1 vs. uniprot
Match: A0A0P8C0Y8_9CYAN (GIY-YIG catalytic domain n=3 Tax=Phormidium TaxID=1198 RepID=A0A0P8C0Y8_9CYAN)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-11
Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   28 KVQNIARPSRSLLEIIRESWIEENGSTPSGNADEASQALWESSFNTLPLFTEEDKAYVATMKDKGKEDRGIKAVARRFEEEIIE 279
            +V+ I RPSR+LLE IR+ W+ ENG+ P GN +  +QA W    +  PL T+ +++      D+GK+ + IK VARR +  ++E
Sbjct:   74 RVETIDRPSRTLLEDIRQKWLTENGTIPPGNGE--AQAQWTQPIDVKPLMTDAERSAFEEALDEGKKTKCIKQVARRVQATVLE 155          
BLAST of mRNA_L-elsbetiae_contig15710.3993.1 vs. uniprot
Match: A0A8J7F8J5_9CYAN (GIY-YIG nuclease family protein n=1 Tax=Oculatella sp. LEGE 06141 TaxID=1828648 RepID=A0A8J7F8J5_9CYAN)

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-11
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   28 KVQNIARPSRSLLEIIRESWIEENGSTPSGNADEASQALWESSFNTLPLFTEEDKAYVATMKDKGKEDRGIKAVARRFEEEII 276
            KVQ IARPSR+ LE +R+SWI ENG TP GNA  A + LW  + +     T  ++A  A   D GK  + +K VARR E E++
Sbjct:   73 KVQTIARPSRTQLEAMRDSWIAENGCTPVGNA--ADEPLWNQAIDAKTKMTAAEQAEYAASDDLGK-IKTLKRVARRVEAEVL 152          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15710.3993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G234_ECTSI2.010e-3575.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0F5YGI1_9CYAN5.930e-1444.09Nuclease subunit of the excinuclease complex n=1 T... [more]
A0A8K1MS18_9CYAN1.320e-1340.22GIY-YIG nuclease family protein n=2 Tax=Oscillator... [more]
A0A6P0Y1X2_9CYAN4.620e-1344.44GIY-YIG nuclease family protein n=1 Tax=Okeania sp... [more]
A0A6P1ZWW8_9CYAN1.340e-1245.65GIY-YIG nuclease family protein n=1 Tax=Nodularia ... [more]
A0A0G4GGJ4_VITBC1.770e-1245.88Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A4D9CSA1_9STRA2.890e-1241.57Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
K8YTT3_NANGC5.180e-1241.57Protein atypical group n=1 Tax=Nannochloropsis gad... [more]
A0A0P8C0Y8_9CYAN1.030e-1140.48GIY-YIG catalytic domain n=3 Tax=Phormidium TaxID=... [more]
A0A8J7F8J5_9CYAN1.400e-1146.99GIY-YIG nuclease family protein n=1 Tax=Oculatella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15710contigL-elsbetiae_contig15710:2529..3457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.7e-29
Seed eggNOG ortholog2880.D7G234
Hectar predicted targeting categoryother localisation
EggNOG OGs28NP8@1,2S5YX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size282
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15710.3993.1prot_L-elsbetiae_contig15710.3993.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15710 2544..3457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.4256518-UTR-L-elsbetiae_contig15710:2528..25431622815645.4256518-UTR-L-elsbetiae_contig15710:2528..2543Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15710 2529..2543 +
1691683011.3646214-UTR-L-elsbetiae_contig15710:2528..25431691683011.3646214-UTR-L-elsbetiae_contig15710:2528..2543Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15710 2529..2543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.4361532-CDS-L-elsbetiae_contig15710:2543..26661622815645.4361532-CDS-L-elsbetiae_contig15710:2543..2666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15710 2544..2666 +
1691683011.377838-CDS-L-elsbetiae_contig15710:2543..26661691683011.377838-CDS-L-elsbetiae_contig15710:2543..2666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15710 2544..2666 +
1622815645.445986-CDS-L-elsbetiae_contig15710:3313..34571622815645.445986-CDS-L-elsbetiae_contig15710:3313..3457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15710 3314..3457 +
1691683011.3883965-CDS-L-elsbetiae_contig15710:3313..34571691683011.3883965-CDS-L-elsbetiae_contig15710:3313..3457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15710 3314..3457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15710.3993.1

>prot_L-elsbetiae_contig15710.3993.1 ID=prot_L-elsbetiae_contig15710.3993.1|Name=mRNA_L-elsbetiae_contig15710.3993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MWGEKVQNIARPSRSLLEIIRESWIEENGSTPSGNADEASQALWESSFNT
LPLFTEEDKAYVATMKDKGKEDRGIKAVARRFEEEIIEV
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mRNA from alignment at L-elsbetiae_contig15710:2529..3457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15710.3993.1 ID=mRNA_L-elsbetiae_contig15710.3993.1|Name=mRNA_L-elsbetiae_contig15710.3993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=929bp|location=Sequence derived from alignment at L-elsbetiae_contig15710:2529..3457+ (Laminarionema elsbetiae ELsaHSoW15)
CAAAAAAATCAAAACATGTGGGGGGAAAAGGTGCAAAACATCGCAAGACC CAGCCGATCCCTGCTGGAAATCATCAGGGAGTCTTGGATAGAGGAGAACG GCTCCACGCCAAGTGGCAACGCAGACGAAGCAAGCCAGGTGCGTGGCGAC GTCAGTTCTTCTCCAGCCTTCGTCGAGATAAGGTCTATTTTTAGTTTACA GGCGTACATACGTACGTTGCACGTGACTTCAGTCAGCCCGCAACGTTTCC GAACCTGTGAAAGGTTTATCGTGTCGTTACCACCGGTGGTGTTGGTCGCC CTGTTTTTCTTCTTTGTGTGACGCCGGGGGTGGGGTTGGTTTGGGTTCAT GCGCTGGAGGGGGCTGACTCCTGTTCAGAAACCTAGGAACCTAGGCCGGG CTCTCGGAGCAAATATTTTGCTTGTCCTTTTGAAAAGGAGAAGCGAGGTG GGTGGCATCGTCTTGGCACTCAAGCGAGTGCGCGTGTGCTGAATACCAAG TACGCCCACAAATGGTGCGCTGCTTCTAAATTTGCTGGGAGGGGACCCTC GTCCGAGAGCGCTGGTAAAACGTGTGGGCCATCCGCGAAAAAAAATTAAA TAAAATGAAAAGTCCCAGGCCGCGCGTGTGTCAAAAGGAAAAGCCGCCGC CGATGTGCGTACGCACCTAGATATCACGTTTTTTTTAATGCCCTCTCTTT TCAACCACAGCAGTTGTTCTTCCTCTTCTTGTGGCTGTTGTTGTCGTTGT TGTTGTTTGCTCGTGGAACATGCGCGTATGAACAGGCGTTGTGGGAGAGC TCCTTCAACACGCTCCCCCTCTTCACCGAGGAGGACAAGGCGTACGTAGC CACGATGAAGGATAAGGGCAAGGAGGACCGAGGGATCAAGGCTGTCGCGC GCCGGTTCGAGGAAGAGATCATCGAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15710:2529..3457+

>mRNA_L-elsbetiae_contig15710.3993.1 ID=mRNA_L-elsbetiae_contig15710.3993.1|Name=mRNA_L-elsbetiae_contig15710.3993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig15710:2529..3457+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGGGGGAAAAGGTGCAAAACATCGCAAGACCCAGCCGATCCCTGCT
GGAAATCATCAGGGAGTCTTGGATAGAGGAGAACGGCTCCACGCCAAGTG
GCAACGCAGACGAAGCAAGCCAGATGTGGGGGGAAAAGGTGCAAAACATC
GCAAGACCCAGCCGATCCCTGCTGGAAATCATCAGGGAGTCTTGGATAGA
GGAGAACGGCTCCACGCCAAGTGGCAACGCAGACGAAGCAAGCCAGGCGT
TGTGGGAGAGCTCCTTCAACACGCTCCCCCTCTTCACCGAGGAGGACAAG
GCGTACGTAGCCACGATGAAGGATAAGGGCAAGGAGGACCGAGGGATCAA
GGCTGTCGCGCGCCGGTTCGAGGAAGAGATCATCGAGGTGGCGTTGTGGG
AGAGCTCCTTCAACACGCTCCCCCTCTTCACCGAGGAGGACAAGGCGTAC
GTAGCCACGATGAAGGATAAGGGCAAGGAGGACCGAGGGATCAAGGCTGT
CGCGCGCCGGTTCGAGGAAGAGATCATCGAGGTG
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