mRNA_L-elsbetiae_contig1571.3988.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1571.3988.1
Unique NamemRNA_L-elsbetiae_contig1571.3988.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1571.3988.1 vs. uniprot
Match: D7FZR1_ECTSI (PAP2_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR1_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 3.150e-43
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1
Query:   16 GDMVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRLVYAYVALGALVIIGSKLHYTLDVLLAVLVSFW 261
            GDMVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRR VYAYVALGALVIIGSKLHYTLDVLLAVLV+FW
Sbjct:  352 GDMVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRAVYAYVALGALVIIGSKLHYTLDVLLAVLVTFW 433          
BLAST of mRNA_L-elsbetiae_contig1571.3988.1 vs. uniprot
Match: A0A6H5KC29_9PHAE (PAP2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC29_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.760e-40
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1
Query:   16 GDMVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRLVYAYVALGALVIIGSKLHYTLDVLLAVLVSF 258
            GDMVFSGHTTCL+MVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRR VYAYV LGALVIIGSKLHYTLDVLLAVLV+F
Sbjct:  358 GDMVFSGHTTCLLMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRAVYAYVTLGALVIIGSKLHYTLDVLLAVLVTF 438          
BLAST of mRNA_L-elsbetiae_contig1571.3988.1 vs. uniprot
Match: A0A835YVL2_9STRA (PAP2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.000e-22
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   16 GDMVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRLVYAYVALGALVIIGSKLHYTLDVLLAVLVSFW 261
            GDM+FSGHTTCL+M A+ FR+Y RA  LQTKVL RG  +SE  L+ +R  VYAYVA G LVIIGSKLHY++DVL A+ +SF+
Sbjct:  328 GDMMFSGHTTCLMMFALVFRQYLRAKHLQTKVLFRGA-VSERFLAPIRHAVYAYVACGCLVIIGSKLHYSIDVLYAIGLSFF 408          
BLAST of mRNA_L-elsbetiae_contig1571.3988.1 vs. uniprot
Match: A0A5D6Y6V8_9STRA (PAP2_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6V8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.570e-11
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   16 GDMVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRLVYAYVALGALVIIGSKLHYTLDVLLAVLVS 255
            GDMVFSGHT   ++ AMT + YC  +EL T    R       VL  VR  VYA VALG  +I+G++LHYTLDVL+A+ V+
Sbjct:  269 GDMVFSGHTVFFMLCAMTVKWYCIKAELNTPFTRR----YPFVLWLVRYTVYAGVALGIFMIVGTRLHYTLDVLVAIYVT 344          
BLAST of mRNA_L-elsbetiae_contig1571.3988.1 vs. uniprot
Match: A0A5D6Y591_9STRA (PAP2_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y591_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.480e-11
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   16 GDMVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRLVYAYVALGALVIIGSKLHYTLDVLLAVLVS 255
            GDMVFSGHT   ++ AMT + YC  SEL T    R  +    VL  VR  VY  VA G   I+G++LHYTLDVL+AV ++
Sbjct:  261 GDMVFSGHTVFFMLCAMTVKTYCVKSELNTPFTRRFPY----VLWMVRYYVYTGVAFGVFAIVGTRLHYTLDVLIAVYIT 336          
BLAST of mRNA_L-elsbetiae_contig1571.3988.1 vs. uniprot
Match: A0A662XYW3_9STRA (PAP2_C domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYW3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.130e-9
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   16 GDMVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRLVYAYVALGALVIIGSKLHYTLDVLLAVLVS 255
            GDM+FSGH   L++ AM  R YC  SEL T    R       VL  VR  VYA  A G   I+G++LHYTLDVL+A+ ++
Sbjct:  320 GDMIFSGHAVFLMLCAMFARTYCVHSELNTPFTRR----YSCVLWMVRYYVYAGSAFGVFAIVGTRLHYTLDVLIAIYIT 395          
BLAST of mRNA_L-elsbetiae_contig1571.3988.1 vs. uniprot
Match: A0A3F2RRE6_9STRA (PAP2_C domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRE6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.050e-9
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   16 GDMVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRLVYAYVALGALVIIGSKLHYTLDVLLAVLVS 255
            GDM+FSGH   L++  M  R YC  SEL T    R       VL  +R  +YA  A GA  I+G++LHYTLDVL+A+ ++
Sbjct:  262 GDMIFSGHAVFLMLCVMFARTYCVRSELNTPFTRR----FPCVLWMIRYYIYAGSAFGAFAIVGTRLHYTLDVLIAIYIT 337          
BLAST of mRNA_L-elsbetiae_contig1571.3988.1 vs. uniprot
Match: W4G5H0_9STRA (PAP2_C domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G5H0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.070e-9
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    1 HNGNSGDMVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRLVYAYVALGALVIIGSKLHYTLDVLLAVLVS 255
            H+   GDM+FSGHT  LV+ A+T   YC  +EL T            VL+ V+        LGA  I+G++LHYTLDVL+A+ V+
Sbjct:  271 HHITCGDMIFSGHTVFLVLCALTVTTYCAKAELNTPFT----RAHPWVLTLVKTATVIGSTLGAFAIVGTRLHYTLDVLIAIYVT 351          
BLAST of mRNA_L-elsbetiae_contig1571.3988.1 vs. uniprot
Match: K3XC87_GLOUD (PAP2_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC87_GLOUD)

HSP 1 Score: 62.4 bits (150), Expect = 2.080e-9
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   16 GDMVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRLVYAYVALGALVIIGSKLHYTLDVLLAVLVS 255
            GDMVFSGHT   ++  M  + YC  SEL T    R  +    VL  VR  VY   A G   I+G++LHYTLDVL+AV ++
Sbjct:  278 GDMVFSGHTVFFMLCCMIVKTYCVKSELNTPFTRRYSY----VLWMVRYYVYTGAAFGIFAIVGTRLHYTLDVLIAVYIT 353          
BLAST of mRNA_L-elsbetiae_contig1571.3988.1 vs. uniprot
Match: A0A1W0A1T6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1T6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.580e-9
Identity = 37/85 (43.53%), Postives = 47/85 (55.29%), Query Frame = 1
Query:    1 HNGNSGDMVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRLVYAYVALGALVIIGSKLHYTLDVLLAVLVS 255
            H+   GDMVFSGHT  LV+ AM    YC   EL T    +        L  +R  VYA    G   I+G++LHYTLDVL+A+ V+
Sbjct:  591 HHITCGDMVFSGHTVFLVLCAMIVTTYCTMEELNTPFTRK----YSWTLPLLRYSVYAGSFFGVFAIVGTRLHYTLDVLIAIYVT 671          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1571.3988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FZR1_ECTSI3.150e-4397.56PAP2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KC29_9PHAE1.760e-4095.06PAP2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YVL2_9STRA1.000e-2264.63PAP2_C domain-containing protein n=1 Tax=Tribonema... [more]
A0A5D6Y6V8_9STRA2.570e-1151.25PAP2_C domain-containing protein n=1 Tax=Pythium b... [more]
A0A5D6Y591_9STRA3.480e-1150.00PAP2_C domain-containing protein n=1 Tax=Pythium b... [more]
A0A662XYW3_9STRA1.130e-947.50PAP2_C domain-containing protein n=2 Tax=Nothophyt... [more]
A0A3F2RRE6_9STRA2.050e-945.00PAP2_C domain-containing protein n=2 Tax=Phytophth... [more]
W4G5H0_9STRA2.070e-942.35PAP2_C domain-containing protein n=3 Tax=Aphanomyc... [more]
K3XC87_GLOUD2.080e-946.25PAP2_C domain-containing protein n=1 Tax=Globispor... [more]
A0A1W0A1T6_9STRA5.580e-943.53Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1571contigL-elsbetiae_contig1571:605..868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue1.2e-33
Seed eggNOG ortholog2880.D7FZR1
KEGG rclassRC00017
KEGG koko:K04714
KEGG ReactionR08969
KEGG Pathwayko00600,ko01100,ko04071,map00600,map01100,map04071
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.sphingomyelin synthase activity
EggNOG OGsKOG3058@1,KOG3058@2759
Ec32 ortholog descriptionSphingomyelin synthase-like domain
Ec32 orthologEc-21_004030.1
EC2.7.8.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size264
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.8707888-CDS-L-elsbetiae_contig1571:604..8471622815644.8707888-CDS-L-elsbetiae_contig1571:604..847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1571 605..847 -
1691683011.0360434-CDS-L-elsbetiae_contig1571:604..8471691683011.0360434-CDS-L-elsbetiae_contig1571:604..847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1571 605..847 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.8807476-UTR-L-elsbetiae_contig1571:847..8681622815644.8807476-UTR-L-elsbetiae_contig1571:847..868Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1571 848..868 -
1691683011.0475805-UTR-L-elsbetiae_contig1571:847..8681691683011.0475805-UTR-L-elsbetiae_contig1571:847..868Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1571 848..868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1571.3988.1prot_L-elsbetiae_contig1571.3988.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1571 605..847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1571.3988.1

>prot_L-elsbetiae_contig1571.3988.1 ID=prot_L-elsbetiae_contig1571.3988.1|Name=mRNA_L-elsbetiae_contig1571.3988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
MVFSGHTTCLVMVAMTFRRYCRASELQTKVLLRGFHLSEGVLSAVRRLVY
AYVALGALVIIGSKLHYTLDVLLAVLVSFW*
back to top

mRNA from alignment at L-elsbetiae_contig1571:605..868-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1571.3988.1 ID=mRNA_L-elsbetiae_contig1571.3988.1|Name=mRNA_L-elsbetiae_contig1571.3988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig1571:605..868- (Laminarionema elsbetiae ELsaHSoW15)
CACAACGGCAACAGCGGCGACATGGTGTTCTCCGGCCACACGACCTGTCT GGTTATGGTCGCGATGACGTTCCGGAGATACTGCCGCGCCTCGGAGCTCC AGACGAAGGTGCTTCTCCGGGGTTTCCACTTGTCGGAGGGCGTTCTCTCG GCGGTGAGGCGGTTGGTCTACGCGTACGTGGCACTGGGGGCCCTGGTGAT TATCGGCTCGAAGCTGCACTACACGTTGGACGTGCTGCTCGCGGTCCTTG TGAGCTTCTGGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1571:605..868-

>mRNA_L-elsbetiae_contig1571.3988.1 ID=mRNA_L-elsbetiae_contig1571.3988.1|Name=mRNA_L-elsbetiae_contig1571.3988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig1571:605..868- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTTCTCCGGCCACACGACCTGTCTGGTTATGGTCGCGATGACGTT
CCGGAGATACTGCCGCGCCTCGGAGCTCCAGACGAAGGTGCTTCTCCGGG
GTTTCCACTTGTCGGAGGGCGTTCTCTCGGCGGTGAGGCGGTTGGTCTAC
GCGTACGTGGCACTGGGGGCCCTGGTGATTATCGGCTCGAAGCTGCACTA
CACGTTGGACGTGCTGCTCGCGGTCCTTGTGAGCTTCTGGTGAATGGTGT
TCTCCGGCCACACGACCTGTCTGGTTATGGTCGCGATGACGTTCCGGAGA
TACTGCCGCGCCTCGGAGCTCCAGACGAAGGTGCTTCTCCGGGGTTTCCA
CTTGTCGGAGGGCGTTCTCTCGGCGGTGAGGCGGTTGGTCTACGCGTACG
TGGCACTGGGGGCCCTGGTGATTATCGGCTCGAAGCTGCACTACACGTTG
GACGTGCTGCTCGCGGTCCTTGTGAGCTTCTGGTGA
back to top