mRNA_L-elsbetiae_contig157.3983.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig157.3983.1 vs. uniprot
Match: D8LC76_ECTSI (Possible CAMK/ Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC76_ECTSI) HSP 1 Score: 815 bits (2106), Expect = 1.160e-263 Identity = 995/1465 (67.92%), Postives = 1117/1465 (76.25%), Query Frame = 1 Query: 1 ASAEAVSRPRYCPEAEEDGDKHERTQAPHSALIIAGPSTELTSN-TRIVGSVTEQLSGAVTCKVATDKPNGQISIQAAPGYLRLPSYVPGQLMRPAPSAARANIQLSLPPIIGEEIRLEAICATSNANPIKTAQAAAGVEPEESGEPAATDESWAAYHARNIGRQHSTSNFVAVRRPL-RQLSVELFEEDDSDDTIASRLSSATVEDNASNEERSDKDTESVTWQQSEEGKSRMAQLTKATVAVESPATKMSRKYLQLFAPSNSAHDTYKVLATLHRKMNGTGWPRRGGWDSYLVRRSRVELDGGRVYGIKSKDGRVELLVLSCNKVYGRIPPTIARLESLKCINLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQFPAKVKFWFSKLSG------MRALDLGFNGIEEPFPDMRGMHQLQSLVLNNNRIYDQLFEGLAEACPNLFKLHLQNNRLSGEIPQNLGALTQLEVLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERMVVNCERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPLFLKTSLGPNACGLKWKGNPRIIDSRHNFASIMSGIQRAG---PETETSFSEPQDYSQQSHARKSSFRPISFKLSVPHHPTSFRSQLSMSHGYQMTPPGPHLDTERSRGDDEGTIDSEDKDSKGLGWEGGIGAMEEGR-GDFGDGRGGVARPWANSEDVSYFLFKVVAGNALVLIDYIIAARLYVIGCVWGSVLVMVWRAMAGFEGVLATRRFGYGFCWLPVSALGLALTWQARICFHHSCESDLFQALQEVEWGWHAMIQLATQLAAALLWWDRGQVGHWYLLASVGLKAIVVGIVSMQRLDDKRMTRYRNRRSESPKVGSAPSVFRDCFLPWLRDSAWPRLILVGFHAAEVCERTIPLASLIAAFGKWAFFAPLALAPGMIARYVARRAWTSRSGGDGGGIASSLRSTLNLSLALDSAFGAGTREHVLATISTTLEAAVFEVVASNSPREYSEGLHQGLVSSMLVMLGFTWAVVVIELAILGGHERERGA-PRLLSPPPPPRLSLLRHFAPSKPFSRPGSASSKTPTTIQVKPPTTSLVVMPRINDSVYISSSSXXXXGSSELDRIEDGRQKLGGRGGQRTALVVPME 4356 A+ + ++ R C DG+ TQ P AL +T+L+ + T + T Q +GA VA P G I Q A Y R SY+PGQ MRP SAARA++QL+LPPI+ E A TSNA+ ++T AA E EE +P ++W YHA + RQHST++ VA RR RQLSVELF E D ++ W QS+EG+S M +LTK TVAVESPATK+SRKYL+LFAPSNSAHDTYKVLA LHR+MNGTGWPRRGGWDSYLVRRSR ELD GRVYG++SK+G VE L+LS N V GRIPP IARLESL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FQFP K +FWF + SG MR+L+LG N +EEPFPD++GM QLQSLVL+ NR+Y L E LAE CPNL++L LQ NRLSGEIP +LG LT+LE L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERMV+NCE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPLFLK SLGPNACG KW GNPRI+DSRH+FAS+ +G++RAG + T+ +D QQ H+ SSF+PI L VP P GYQ+ G +++ +G +E L E GIG MEE ++GD G +R WANSED YFLFKVV GNALVLID +IAARLY+IGC WG LV++WR M+G EGVLAT R GYG CWLP++ALGLALTWQAR CFHHSCESDLFQ LQ+VEW WHAMIQL+TQLAAAL WWDRGQVG+WYLLASVG+KA+VVG+VSMQRLDD+R+T+ + RRSE+P G PSVFR FLPWLRDSAWPRLILVGFH AEVCERTIPLASL+AA G W F APLA+APGM ARYVARRA SR+ GDG + S+++S L SLALDSAFGAGT HV A IS+TLE VF+ V SN+PR Y + LHQ L+ + V+ FTW +VV+E+ I G ER PR+L+ RL+LL S+ S ++ T TI V+P ++SL + + S S G+ IED ++ G RGG+R A VVP+E Sbjct: 178 AAGQVLAERRECSGPRLDGENDHLTQTPAPALPPVDSTTQLSGDATTLPLETTRQAAGARA--VAAFDPTG-IGTQPAVRYQRRASYMPGQAMRPGRSAARASVQLALPPIVTEGEPAPAN-ETSNADAVRTIHEAAESEVEEPDQPMG-GQTWKEYHALHPDRQHSTADLVAYRRTRNRQLSVELFGEGDDTSXXXXXXXXXXXXXXXXXXXXXXXXLDTPLWPQSDEGRSMMEKLTKVTVAVESPATKISRKYLKLFAPSNSAHDTYKVLAALHRRMNGTGWPRRGGWDSYLVRRSRAELDEGRVYGVRSKEGSVEYLILSSNNVCGRIPPIIARLESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQFPVKFQFWFLRSSGATGGSGMRSLNLGSNEVEEPFPDLQGMEQLQSLVLDQNRMYGGLTESLAETCPNLYRLSLQKNRLSGEIPHSLGMLTKLEHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERMVMNCECLQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPLFLKASLGPNACGFKWAGNPRIVDSRHHFASV-AGLRRAGGNQADRGTATPPSKDQHQQQHSTNSSFKPIPLTLRVPDLPGCEEKSRLRGSGYQVGAKGGF--SQQLQGSEE------------LDREIGIGVMEEDYLCEYGDDGTGASRLWANSEDFCYFLFKVVVGNALVLIDLVIAARLYLIGCKWGFFLVILWRVMSGMEGVLATHRLGYGRCWLPMAALGLALTWQARKCFHHSCESDLFQVLQQVEWRWHAMIQLSTQLAAALSWWDRGQVGYWYLLASVGMKALVVGVVSMQRLDDRRLTQDKERRSETPAAGLVPSVFRTRFLPWLRDSAWPRLILVGFHVAEVCERTIPLASLVAALGGWMFLAPLAMAPGMCARYVARRALVSRAKGDG--VVSAVKSALKTSLALDSAFGAGTPVHVAAAISSTLETIVFQTVGSNAPRGYPDELHQLLLYWISVLFVFTWVIVVLEVTIPVGRERTLLLRPRVLAR----RLALLG----SRWTSSRSRSNKPTMRTIHVQPSSSSLGLP-------HTPSGSSDGAGA-----IEDDQRTPGWRGGRRVASVVPVE 1600 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig157.3983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig157.3983.1 >prot_L-elsbetiae_contig157.3983.1 ID=prot_L-elsbetiae_contig157.3983.1|Name=mRNA_L-elsbetiae_contig157.3983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1363bp MRPAPSAARANIQLSLPPIIGEEIRLEAICATSNANPIKTAQAAAGVEPEback to top mRNA from alignment at L-elsbetiae_contig157:39526..49662+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig157.3983.1 ID=mRNA_L-elsbetiae_contig157.3983.1|Name=mRNA_L-elsbetiae_contig157.3983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10137bp|location=Sequence derived from alignment at L-elsbetiae_contig157:39526..49662+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig157:39526..49662+ >mRNA_L-elsbetiae_contig157.3983.1 ID=mRNA_L-elsbetiae_contig157.3983.1|Name=mRNA_L-elsbetiae_contig157.3983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=8178bp|location=Sequence derived from alignment at L-elsbetiae_contig157:39526..49662+ (Laminarionema elsbetiae ELsaHSoW15)back to top |