mRNA_L-elsbetiae_contig1568.3971.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1568.3971.1 vs. uniprot
Match: A0A6H5KFA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA2_9PHAE) HSP 1 Score: 328 bits (840), Expect = 1.150e-99 Identity = 159/264 (60.23%), Postives = 201/264 (76.14%), Query Frame = 2
Query: 1073 RDPSADAELGRLQNSIAAEQNRRIRAEAIIQRAKGGGIRPGDFPSVRDVDRDVEKLAEHAIKWTEKAGAIGGSHFALPATLQSVLENTFLVCREEVARCFDGKLLSLSEFLGNDEPIVLSGGDSMNLDTQYVLYECLRRNFRKIVPVEPERMDELAGGVQQRCAGAADGKLASAVVSGDAWPAFDNLMKNYIMVFVEMTLQHPPMEFNDDLSKSRAFDPVVHRDWAQSLEVSAGEQCCVVFPAVLRTEGRPDSNAKAGVVRLPA 1864
RD + + ELGRL+ + E +RR++AE ++ RAKGGG+R GDFPSVRDV + V +LA+ A+ WTEKA A+GGSH A+ T+ SVL NTFLVCREEV RC D +L +LS FLGNDEPI+LS GD MNLDTQYVLYECL +++++IVP +P+RM+ LAG V +RC AD LA+ ++SG AWP+F+ LMKNY+MVFVEM LQ P +EF D+L + FD VVHRDWA + AG+ C +VFPA+ EGRP SNAK GVVRLPA
Sbjct: 86 RDANTEVELGRLRRDLETEHSRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPAVNGTILSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPDRMNALAGVVLRRCEEPADESLANEIISGPAWPSFEALMKNYLMVFVEMALQKPRVEFEDNLGDAVTFDSVVHRDWAPYSKAPAGQSCSIVFPALRPQEGRPMSNAKIGVVRLPA 349
BLAST of mRNA_L-elsbetiae_contig1568.3971.1 vs. uniprot
Match: D7FSP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP0_ECTSI) HSP 1 Score: 330 bits (846), Expect = 3.130e-98 Identity = 159/268 (59.33%), Postives = 200/268 (74.63%), Query Frame = 2
Query: 1061 PVRVRDPSADAELGRLQNSIAAEQNRRIRAEAIIQRAKGGGIRPGDFPSVRDVDRDVEKLAEHAIKWTEKAGAIGGSHFALPATLQSVLENTFLVCREEVARCFDGKLLSLSEFLGNDEPIVLSGGDSMNLDTQYVLYECLRRNFRKIVPVEPERMDELAGGVQQRCAGAADGKLASAVVSGDAWPAFDNLMKNYIMVFVEMTLQHPPMEFNDDLSKSRAFDPVVHRDWAQSLEVSAGEQCCVVFPAVLRTEGRPDSNAKAGVVRLPA 1864
P RD + + ELGRL+ + E RR++AE ++ RAKGGG+R GDFPSVRDV + V +LA+ A+ WTEKA A+GGSH AL T+ SVL NTFLVCREEV RC D +L +LS FLGNDEPI+LS GD MNLDTQYVLYECL +++++IVP +P+RMD LAG V QRC AD LA+ ++SG WP+F+ LMKNY++VFVEM LQ P +EF D+L + FD ++HRDWA + AG+ C +VFPA+ EGRP SNAK GVVRLPA
Sbjct: 252 PAGRRDANTEVELGRLRRDLETEHTRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPALNGTVLSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPDRMDALAGVVLQRCGEPADRSLANEILSGATWPSFEALMKNYLLVFVEMALQKPRVEFEDNLGDAMTFDSIIHRDWAPYSKAPAGQSCSIVFPAIRPQEGRPTSNAKIGVVRLPA 519
BLAST of mRNA_L-elsbetiae_contig1568.3971.1 vs. uniprot
Match: A0A6H5KA22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA22_9PHAE) HSP 1 Score: 292 bits (748), Expect = 7.890e-87 Identity = 145/259 (55.98%), Postives = 182/259 (70.27%), Query Frame = 2
Query: 1088 DAELGRLQNSIAAEQNRRIRAEAIIQRAKGGGIRPGDFPSVRDVDRDVEKLAEHAIKWTEKAGAIGGSHFALPATLQSVLENTFLVCREEVARCFDGKLLSLSEFLGNDEPIVLSGGDSMNLDTQYVLYECLRRNFRKIVPVEPERMDELAGGVQQRCAGAADGKLASAVVSGDAWPAFDNLMKNYIMVFVEMTLQHPPMEFNDDLSKSRAFDPVVHRDWAQSLEVSAGEQCCVVFPAVLRTEGRPDSNAKAGVVRLPA 1864
D E+ RL+ + E RR++AE +I R+ GGG+RPG FP VRDV + V LA+ A+ WTEKA A+GGS A T +SVL NTFLVCREEV RC D +L +LS FLGNDEPI+LS GD +LDTQYVLYECL R +R IV EP+RMDELAG + QRC AD LA+ ++SG WP+F+ LMKNY++VFVEMTLQ P ++F D+L + AFDP H D A + + C +VFP++ E P SNAK GVVR+PA
Sbjct: 65 DVEVDRLRRDLETEHTRRVKAETLIHRSSGGGLRPGAFPGVRDVYQHVGHLADDALAWTEKAFAVGGSRQAWYGTTRSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEKSLDTQYVLYECLCRKYRTIVSTEPDRMDELAGLILQRCGEPADRGLANEIMSGATWPSFEALMKNYLLVFVEMTLQKPGIDFEDNLGDNVAFDPAEHCDLAPYSKAPTAQHCSIVFPSIRPQEAHPHSNAKIGVVRVPA 323
BLAST of mRNA_L-elsbetiae_contig1568.3971.1 vs. uniprot
Match: D7FSP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP1_ECTSI) HSP 1 Score: 278 bits (711), Expect = 6.840e-81 Identity = 141/259 (54.44%), Postives = 173/259 (66.80%), Query Frame = 2
Query: 1088 DAELGRLQNSIAAEQNRRIRAEAIIQRAKGGGIRPGDFPSVRDVDRDVEKLAEHAIKWTEKAGAIGGSHFALPATLQSVLENTFLVCREEVARCFDGKLLSLSEFLGNDEPIVLSGGDSMNLDTQYVLYECLRRNFRKIVPVEPERMDELAGGVQQRCAGAADGKLASAVVSGDAWPAFDNLMKNYIMVFVEMTLQHPPMEFNDDLSKSRAFDPVVHRDWAQSLEVSAGEQCCVVFPAVLRTEGRPDSNAKAGVVRLPA 1864
D E+GRL+ + E RR+ AE +I R+ GGG+RPG FPSV DV + V LA+ A+ WTEKA A+GGS T +SVL NTFLVCREEV RC D +L LS FLGN EPI+LS GD +LD QYVLYECL R +R IV EP+RMDELA + QRC AD LA+ + SG WP+F+ LMKNY++VFVEM LQ P ++F D L + AFDP H D A + C +VFP++ E P SNAK GVVR+PA
Sbjct: 115 DVEVGRLRRDLDTEHTRRVNAETLIHRSSGGGLRPGVFPSVGDVYQHVGHLADDALAWTEKAFAVGGSRQTWYGTTRSVLYNTFLVCREEVQRCLDERLQILSAFLGNAEPILLSAGDEKSLDPQYVLYECLCRKYRTIVSTEPDRMDELARLILQRCGEPADRGLANEITSGATWPSFEALMKNYLLVFVEMALQKPGIDFEDSLGDNVAFDPAEHCDLAPYSRAPTAQHCSIVFPSIRPQEAHPHSNAKIGVVRVPA 373
BLAST of mRNA_L-elsbetiae_contig1568.3971.1 vs. uniprot
Match: D7FRD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD0_ECTSI) HSP 1 Score: 236 bits (601), Expect = 1.720e-65 Identity = 131/288 (45.49%), Postives = 183/288 (63.54%), Query Frame = 2
Query: 1058 PPVRV---RDPSADAELGRLQNSIAAEQNRRIRAEA--------------IIQRAKGGGIRPG-DFPSVRDVDRDVEK-LAEHAIKWTEKAGAIGGSHFALPATLQSVLENTFLVCREEVARCFDGKLLSLSEFLGNDEPIVLSGGDSMNLDTQYVLYECLRRNFRKIVPVEPERMDELAGGVQQRCAGAADGKLASAVVSGDAWPAFDNLMKNYIMVFVEMTLQHPPMEF-NDDLSKSRAFDPVVHRDWAQSLEVSAGEQCCVVFPAVLRTEGRPDSNAKAGVVRLP 1861
PP R+ R ADAEL L+ +A E++RR AEA ++ R++ G+RPG DFPSVR V ++++ L + A++WTEK +GGS L AT+++VLE+TF VCR+E RC D +L + +E LG DEPI LSG SMNLDT+YVLY CL RN++ IV ++P ++ LA + QRC G D LA ++ SG+A P FD LMK+Y+ VF+ M LQ+PPM F +DDL + FD +HR WA G+QC +VFP+++ GR ++ K GVV +P
Sbjct: 91 PPTRLPHHRSGIADAELDTLRKKVATEKSRRELAEADMEAARRQLNAYESLVLRSEVKGVRPGNDFPSVRSVLQEIKHGLIDDALRWTEKVSTLGGSQAGLTATIRAVLEHTFHVCRKEAMRCLDNRLRAFTECLGEDEPISLSGDKSMNLDTEYVLYTCLCRNYKTIVSMKPSQVQNLAVTIVQRCKGHED--LAGSITSGNARPFFDALMKHYLQVFIVMGLQNPPMGFKDDDLGMNTTFDGSLHRYWAPCSNTPIGQQCTIVFPSIVLEGGRVNNVVKIGVVHVP 376 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1568.3971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1568.3971.1 >prot_L-elsbetiae_contig1568.3971.1 ID=prot_L-elsbetiae_contig1568.3971.1|Name=mRNA_L-elsbetiae_contig1568.3971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp EPTPAPASALRDPDQACSDGFEDESGAVCCAPTCTICGGEGCGDEPDSASback to top mRNA from alignment at L-elsbetiae_contig1568:9696..25308- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1568.3971.1 ID=mRNA_L-elsbetiae_contig1568.3971.1|Name=mRNA_L-elsbetiae_contig1568.3971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=15613bp|location=Sequence derived from alignment at L-elsbetiae_contig1568:9696..25308- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1568:9696..25308- >mRNA_L-elsbetiae_contig1568.3971.1 ID=mRNA_L-elsbetiae_contig1568.3971.1|Name=mRNA_L-elsbetiae_contig1568.3971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig1568:9696..25308- (Laminarionema elsbetiae ELsaHSoW15)back to top |