mRNA_L-elsbetiae_contig15670.3967.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15670.3967.1
Unique NamemRNA_L-elsbetiae_contig15670.3967.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15670.3967.1 vs. uniprot
Match: A0A6H5JJQ2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ2_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 6.690e-35
Identity = 82/127 (64.57%), Postives = 85/127 (66.93%), Query Frame = 2 
Query:   56 RALQLPPRNRGLWIKAASWEFFDGRNASSARSLLQRTXXXXXXXXXXXXQYFRLEFLYVEKPMGRREILGLKEERNGAD-----------AGREGMDIPELEAEEGQSGEPSFTAVQKAAAAEAGAG 403
            RALQL PRN GLWIKAASWEFFDG N SSARSL+QR             QYFRLEF YVEK MGRREILGL+ ER GA             GR GMDIPELEAE GQSG PSF AV+KAA AE   G
Sbjct:   12 RALQLHPRNPGLWIKAASWEFFDGGNTSSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEAERGGAGDNGQGNDXXXXGGRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEGALG 138
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BLAST of mRNA_L-elsbetiae_contig15670.3967.1 vs. uniprot
Match: A0A835YXJ8_9STRA (U3 small nucleolar RNA-associated protein 6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXJ8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.910e-19
Identity = 57/113 (50.44%), Postives = 72/113 (63.72%), Query Frame = 2 
Query:   56 RALQLPPRNRGLWIKAASWEFFDGRNASSARSLLQRTXXXXXXXXXXXXQYFRLEFLYVEKPMGRREILGLKEERNGA-----DAGREGMDIPELEAEEGQSGEPSFTAVQKA 379
            RALQL P N GLWIKAASWEFFD  NA +AR LLQR             QYFRLE+ Y++K +GR+++LGL E+ +       DAG  G+DIPE++ E G+S  P F+ V  A
Sbjct:  104 RALQLHPHNAGLWIKAASWEFFDCANAVAARVLLQRALRINGVNQRLWVQYFRLEWCYLQKVIGRQQVLGLIEDDSEGGEGVGDAG--GLDIPEVQGE-GESSGPDFSQVAAA 213
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BLAST of mRNA_L-elsbetiae_contig15670.3967.1 vs. uniprot
Match: A0A6A5AAZ4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AAZ4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.460e-14
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 2 
Query:   59 ALQLPPRNRGLWIKAASWEFFDGRNASSARSLLQRTXXXXXXXXXXXXQYFRLEFLYVEKPMGRREILGLKEER 280
            ALQL PRN  +WI+AA+WEF    N  SAR LLQR+            +YFRLEFLYV+K   RRE+LGL  E+
Sbjct:   45 ALQLHPRNEAIWIEAAAWEFATNLNVDSARVLLQRSIRINPHSQKLWLEYFRLEFLYVQKLRTRREVLGLDTEK 118
[Close]
BLAST of mRNA_L-elsbetiae_contig15670.3967.1 vs. uniprot
Match: W4H669_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H669_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.460e-13
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 2 
Query:   59 ALQLPPRNRGLWIKAASWEFFDGRNASSARSLLQRTXXXXXXXXXXXXQYFRLEFLYVEKPMGRREILGLKEER 280
            ALQL PRN  +WI+AA+WEF    N  SAR LLQR+            +YFRLEFLYV+K   RRE+LGL  E+
Sbjct:  132 ALQLHPRNEAIWIEAAAWEFATNLNVDSARVLLQRSIRINPHSQKLWLEYFRLEFLYVQKLRTRREVLGLDTEK 205
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BLAST of mRNA_L-elsbetiae_contig15670.3967.1 vs. uniprot
Match: A0A024UHP5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UHP5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.190e-12
Identity = 39/70 (55.71%), Postives = 45/70 (64.29%), Query Frame = 2 
Query:   59 ALQLPPRNRGLWIKAASWEFFDGRNASSARSLLQRTXXXXXXXXXXXXQYFRLEFLYVEKPMGRREILGL 268
            ALQL PRN  LWI+AASWEF    N  SAR L+QR+            +YFRLEFLYV+K   RRE+LGL
Sbjct:  132 ALQLHPRNETLWIEAASWEFSTNLNVDSARVLMQRSIRMNPHSKKLWLEYFRLEFLYVQKLRTRREVLGL 201
[Close]
BLAST of mRNA_L-elsbetiae_contig15670.3967.1 vs. uniprot
Match: A0A067CUV9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CUV9_SAPPC)

HSP 1 Score: 76.6 bits (187), Expect = 1.590e-12
Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = 2 
Query:   59 ALQLPPRNRGLWIKAASWEFFDGRNASSARSLLQRTXXXXXXXXXXXXQYFRLEFLYVEKPMGRREILGL 268
            ALQL PRN  +WI+AASWEF    N  SAR L+QR+            +YFRLEFLYV+K   RRE+LGL
Sbjct:  132 ALQLHPRNEAIWIEAASWEFNTNLNMDSARVLMQRSIRINPHSQRLWAEYFRLEFLYVQKLRARRELLGL 201
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BLAST of mRNA_L-elsbetiae_contig15670.3967.1 vs. uniprot
Match: A0A1V9YI95_9STRA (U3 small nucleolar RNA-associated protein 6 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YI95_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.900e-12
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 2 
Query:   59 ALQLPPRNRGLWIKAASWEFFDGRNASSARSLLQRTXXXXXXXXXXXXQYFRLEFLYVEKPMGRREILGLKEERNGADAGRE-GMDIPELEAEEGQSGEPSFT 364
            ALQ+ PRN  +WI+AASWEF    N  SAR L+QR+            +YFRLEFLYV+K   RRE+LG+      A+A +E  ++I  L AEE ++ EP  +
Sbjct:  126 ALQMHPRNEAIWIEAASWEFTASLNMDSARVLMQRSIRINPHSQRLWIEYFRLEFLYVQKLRARREVLGIDAP---AEAPKELSLEIEPL-AEEAEAPEPQLS 224
[Close]
BLAST of mRNA_L-elsbetiae_contig15670.3967.1 vs. uniprot
Match: A0A1V9ZX16_9STRA (Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial-like n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX16_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.350e-12
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 2 
Query:   59 ALQLPPRNRGLWIKAASWEFFDGRNASSARSLLQRTXXXXXXXXXXXXQYFRLEFLYVEKPMGRREILGL 268
            ALQ+ PRN  +WI+AASWEF    N  SAR L+QR+            +YFRLEFLYV+K   RRE+LGL
Sbjct:  656 ALQMHPRNEAIWIEAASWEFTSNLNIDSARVLMQRSIRINPHSQRLWTEYFRLEFLYVQKLRVRREVLGL 725
[Close]
BLAST of mRNA_L-elsbetiae_contig15670.3967.1 vs. uniprot
Match: W7TSJ7_9STRA (RNA-processing protein, HAT helix n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSJ7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.870e-10
Identity = 46/99 (46.46%), Postives = 58/99 (58.59%), Query Frame = 2 
Query:   59 ALQLPPRNRGLWIKAASWEFFDGRNASSARSLLQR-TXXXXXXXXXXXXQYFRLEFLYVEKPMGRREILGLK-EERNGADA---GREGMDIPELEAEEG 340
            ALQL PR  GLWI+AAS+EFF+  +  +AR L+QR              QYF+LE LYV K  GRR  LGL+ EER G       +E + +P +E EEG
Sbjct:  132 ALQLFPRTAGLWIRAASYEFFERASPPAARVLMQRGLRLNASDSALLWTQYFKLEVLYVMKLKGRRTALGLEGEEREGKGEEXXXKESVQLPLVEGEEG 230
[Close]
BLAST of mRNA_L-elsbetiae_contig15670.3967.1 vs. uniprot
Match: A0A3M6VEQ5_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VEQ5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.290e-9
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 2 
Query:   56 RALQLPPRNRGLWIKAASWEFFDGRNASSARSLLQRTXXXXXXXXXXXXQYFRLEFLYVEKPMGRREILGLKEE 277
            RALQ  PRN  LWI+AAS+EF    N  SAR L+QR             +YFRLE LYV+K + RR++L L EE
Sbjct:  123 RALQSHPRNAQLWIEAASYEFGVNLNVDSARVLMQRAIRLNKHNQKLWLEYFRLELLYVQKLVMRRQVLRLDEE 196
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15670.3967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JJQ2_9PHAE6.690e-3564.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YXJ8_9STRA3.910e-1950.44U3 small nucleolar RNA-associated protein 6-domain... [more]
A0A6A5AAZ4_9STRA4.460e-1452.70Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4H669_9STRA6.460e-1352.70Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
A0A024UHP5_9STRA1.190e-1255.71Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A067CUV9_SAPPC1.590e-1254.29Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9YI95_9STRA2.900e-1244.66U3 small nucleolar RNA-associated protein 6 n=1 Ta... [more]
A0A1V9ZX16_9STRA3.350e-1252.86Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1... [more]
W7TSJ7_9STRA2.870e-1046.46RNA-processing protein, HAT helix n=2 Tax=Monodops... [more]
A0A3M6VEQ5_9STRA2.290e-950.00Uncharacterized protein n=2 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15670contigL-elsbetiae_contig15670:1908..2596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue1.5e-25
Seed eggNOG ortholog2880.D8LSS2
KEGG koko:K14557
KEGG Pathwayko03008,map03008
Hectar predicted targeting categorymitochondrion
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsCOG5191@1,KOG2396@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-15_002810.1
Exons1
Model size691
Cds size399
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.8447244-UTR-L-elsbetiae_contig15670:1907..21971622815642.8447244-UTR-L-elsbetiae_contig15670:1907..2197Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15670 1908..2197 +
1691683009.639119-UTR-L-elsbetiae_contig15670:1907..21971691683009.639119-UTR-L-elsbetiae_contig15670:1907..2197Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15670 1908..2197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.8565588-CDS-L-elsbetiae_contig15670:2197..25961622815642.8565588-CDS-L-elsbetiae_contig15670:2197..2596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15670 2198..2596 +
1691683009.6578267-CDS-L-elsbetiae_contig15670:2197..25961691683009.6578267-CDS-L-elsbetiae_contig15670:2197..2596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15670 2198..2596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15670.3967.1prot_L-elsbetiae_contig15670.3967.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15670 2198..2596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15670.3967.1

>prot_L-elsbetiae_contig15670.3967.1 ID=prot_L-elsbetiae_contig15670.3967.1|Name=mRNA_L-elsbetiae_contig15670.3967.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
MPAGKAWIYRSSRQRRARAGSRASRLFKKQRRRRQGRGRVGPGGDSGATV
GGDGSFRPVPVTNGTARLFFRGAVPIAVFWAAIRAVPEDVGFRSGFLRCC
AVYFLALASDATQSVLASIKRDFPESCEAWELR
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mRNA from alignment at L-elsbetiae_contig15670:1908..2596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15670.3967.1 ID=mRNA_L-elsbetiae_contig15670.3967.1|Name=mRNA_L-elsbetiae_contig15670.3967.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=689bp|location=Sequence derived from alignment at L-elsbetiae_contig15670:1908..2596+ (Laminarionema elsbetiae ELsaHSoW15)
CCCAACCGACCACAAAAAACACAAACGCAGACGCTGGGAAGACTCTTCGC
GCGAGCGCGCCCTTCAGCTGCCCCCCCGCAACCGCGGGCTGTGGATCAAG
GCGGCAAGCTGGGAGTTCTTTGACGGCAGAAACGCCTCCTCAGCGCGATC
GCTCCTGCAGAGGACGCTGCGCATCAACCCGGAGGCGCGTAACCTCTGGC
TCCAGTACTTCCGCCTTGAGTTTTTGTACGTGGAGAAGCCGATGGGCCGG
CGAGAGATCCTCGGCCTGAAGGAAGAGCGCAACGGCGCCGATGCCGGCCG
GGAAGGCATGGATATACCGGAGCTCGAGGCAGAGGAGGGCCAGAGCGGGG
AGCCGAGCTTCACGGCTGTTCAAAAAGCAGCGGCGGCGGAGGCAGGGGCG
GGGCCGGGTCGGGCCGGGCGGCGATAGTGGTGCTACGGTGGGCGGCGACG
GCAGCTTTCGGCCCGTGCCCGTGACGAACGGCACCGCCCGGCTGTTCTTC
AGGGGGGCCGTGCCGATAGCCGTGTTTTGGGCAGCGATCAGGGCCGTGCC
CGAGGACGTGGGGTTCCGGTCGGGGTTCCTGCGCTGCTGCGCCGTGTACT
TCCTGGCCCTGGCCAGCGACGCCACCCAGTCCGTGCTGGCCTCGATCAAG
CGGGACTTCCCTGAGAGCTGCGAAGCGTGGGAGCTGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15670:1908..2596+

>mRNA_L-elsbetiae_contig15670.3967.1 ID=mRNA_L-elsbetiae_contig15670.3967.1|Name=mRNA_L-elsbetiae_contig15670.3967.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig15670:1908..2596+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCCGGGAAGGCATGGATATACCGGAGCTCGAGGCAGAGGAGGGC
CAGAGCGGGGAGCCGAGCTTCACGGCTGTTCAAAAAGCAGCGGCGGCGGA
GGCAGGGGCGGGGCCGGGTCGGGCCGGGCGGCGATAGTGGTGCTACGGTG
GGCGGCGACGGCAGCTTTCGGCCCGTGCCCGTGACGAACGGCACCGCCCG
GCTGTTCTTCAGGGGGGCCGTGCCGATAGCCGTGTTTTGGGCAGCGATCA
GGGCCGTGCCCGAGGACGTGGGGTTCCGGTCGGGGTTCCTGCGCTGCTGC
GCCGTGTACTTCCTGGCCCTGGCCAGCGACGCCACCCAGTCCGTGCTGGC
CTCGATCAAGCGGGACTTCCCTGAGAGCTGCGAAGCGTGGGAGCTGCGGA
TGCCGGCCGGGAAGGCATGGATATACCGGAGCTCGAGGCAGAGGAGGGCC
AGAGCGGGGAGCCGAGCTTCACGGCTGTTCAAAAAGCAGCGGCGGCGGAG
GCAGGGGCGGGGCCGGGTCGGGCCGGGCGGCGATAGTGGTGCTACGGTGG
GCGGCGACGGCAGCTTTCGGCCCGTGCCCGTGACGAACGGCACCGCCCGG
CTGTTCTTCAGGGGGGCCGTGCCGATAGCCGTGTTTTGGGCAGCGATCAG
GGCCGTGCCCGAGGACGTGGGGTTCCGGTCGGGGTTCCTGCGCTGCTGCG
CCGTGTACTTCCTGGCCCTGGCCAGCGACGCCACCCAGTCCGTGCTGGCC
TCGATCAAGCGGGACTTCCCTGAGAGCTGCGAAGCGTGGGAGCTGCGG
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