prot_L-elsbetiae_contig1567.3964.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1567.3964.1
Unique Nameprot_L-elsbetiae_contig1567.3964.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length238
Homology
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A6H5LDQ8_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDQ8_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 8.290e-101
Identity = 196/256 (76.56%), Postives = 205/256 (80.08%), Query Frame = 0
Query:    1 MKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXXAG-----------------AADGNDRASGDGAQARKPAPAGKXXXXXVGDSHQRIRRRFKQSSPVADVGXXXXXXMDSTVLRSVFGGRGGDGGRK--NTKDG 237
            MKPAKVKHLMEQHGVV+RVYLVEEDQANRRARKK GGNSGKRY EGWVEFEDKKIARA AESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXX                    A G +   G+      PAPAG      VGDSH+RIRRRFKQS+PV DVG XXXXXMD+ VLRS+FGG  G   R+  N +DG
Sbjct:  115 MKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKGGGNSGKRYAEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAGGGEGVPGN------PAPAG------VGDSHRRIRRRFKQSNPVGDVGGXXXXXMDAKVLRSLFGGDDGGVRRRTGNNEDG 358          
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: D7FRK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK9_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 6.570e-58
Identity = 137/184 (74.46%), Postives = 140/184 (76.09%), Query Frame = 0
Query:   57 RAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXXAGAADGNDRASG-----------------DGAQARKPAPAGKXXXXXVGDSHQRIRRRFKQSSPVADVGXXXXXXMDSTVLRSVFG 223
            RA AESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXX                             +G      APAG      VGDSH+RIRRRFKQSSPV DVGXXXXXXMD+ VLRSVFG
Sbjct:   15 RATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVPGNA-APAG------VGDSHRRIRRRFKQSSPVGDVGXXXXXXMDAKVLRSVFG 191          
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A2D4BVT2_PYTIN (Pre-rRNA-processing protein ESF2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVT2_PYTIN)

HSP 1 Score: 187 bits (475), Expect = 1.030e-55
Identity = 89/139 (64.03%), Postives = 111/139 (79.86%), Query Frame = 0
Query:    1 MKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 139
            MKP K+KHL+ Q+G ++RVYLV ED+A ++ R  AGGN   +YTEGW+EFEDKK+A+++A  LN   IGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E VE  + F KMEER
Sbjct:   57 MKPEKLKHLLGQYGAINRVYLVPEDKAQQKRRVAAGGNRKTKYTEGWIEFEDKKVAKSVAAMLNTKQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIREQKLRMEIAQAKKENDAYLERVEQSKQFQKMEER 195          
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A5D6Y296_9STRA (RRM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y296_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.260e-54
Identity = 89/139 (64.03%), Postives = 108/139 (77.70%), Query Frame = 0
Query:    1 MKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 139
            MKP KVKHL+ Q G ++R+YLV ED+ N + R  AGGN  + YTEGW+EFEDKK+AR +A  LN   IGGRKR+YYHDD+WNLKYL+ FKWDHLTEK+AYE R+R QKLRLE  QAK+EN  Y++ VE  + F KMEER
Sbjct:   49 MKPEKVKHLLGQFGDINRIYLVPEDKTNHKKRVAAGGNRKQSYTEGWIEFEDKKVARQVAAVLNTRQIGGRKRDYYHDDIWNLKYLKGFKWDHLTEKIAYENRIRDQKLRLEIAQAKKENEAYLDKVEQSKQFEKMEER 187          
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: K3WDP5_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDP5_GLOUD)

HSP 1 Score: 183 bits (465), Expect = 4.710e-54
Identity = 87/139 (62.59%), Postives = 110/139 (79.14%), Query Frame = 0
Query:    1 MKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 139
            MKP KVKHL+ Q+G ++R+YLV ED+ + + R  AGGN  + YTEGW+EFEDKK+A+ +A+ LN   IGGRKR+YYHDD+WNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E VE  + F KMEER
Sbjct:   63 MKPEKVKHLLGQYGDINRIYLVPEDKTHHKKRVAAGGNRKQSYTEGWIEFEDKKVAKQVAKVLNTRQIGGRKRDYYHDDIWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLEKVEQSKKFEKMEER 201          
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: H3HB09_PHYRM (RRM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB09_PHYRM)

HSP 1 Score: 181 bits (458), Expect = 3.430e-53
Identity = 84/139 (60.43%), Postives = 112/139 (80.58%), Query Frame = 0
Query:    1 MKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 139
            MKP K++HL+ ++G ++R+YLV ED++  + R  AGGN  ++YTEGW+EFEDKK+A+ +A+ LN TLIGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E V+  + F KM+ R
Sbjct:   48 MKPEKLRHLLGKYGELNRIYLVPEDKSLHKKRVSAGGNRRQKYTEGWLEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVDQSKQFEKMDAR 186          
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A0P1B2U2_PLAHL (Pre-rrna-processing protein esf2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B2U2_PLAHL)

HSP 1 Score: 179 bits (455), Expect = 7.880e-53
Identity = 85/139 (61.15%), Postives = 109/139 (78.42%), Query Frame = 0
Query:    1 MKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 139
            MKP K++HL+ ++G ++R+YLV ED+   + R  AGGN   +YTEGW+EFEDKK+A+ +A+ LN T IGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E VE  +   KMEER
Sbjct:   43 MKPEKLRHLLGKYGELNRIYLVPEDKVLHKKRVSAGGNRRMKYTEGWIEFEDKKVAKRVAKMLNTTQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEVYLERVEQSKQLEKMEER 181          
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: D0MVG4_PHYIT (Pre-rRNA-processing protein ESF2 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MVG4_PHYIT)

HSP 1 Score: 179 bits (455), Expect = 9.150e-53
Identity = 84/139 (60.43%), Postives = 111/139 (79.86%), Query Frame = 0
Query:    1 MKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 139
            MKP K++HL+ ++G ++R+YLV ED+A  + R  +GGN  ++YTEGW+EFE+KK+A+ +A+ LN T IGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E VE  + F KME R
Sbjct:   48 MKPEKLRHLLGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFENKKVAKRVAKMLNTTQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVEQSKQFEKMEAR 186          
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A7S3US98_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3US98_HETAK)

HSP 1 Score: 177 bits (448), Expect = 1.890e-52
Identity = 100/210 (47.62%), Postives = 131/210 (62.38%), Query Frame = 0
Query:   14 GVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXXAGAADGNDRASGDGAQARKPAPAGKXXXXXVGDSHQRIRRRFKQSSPVADV-GXXXXXXMDSTVLRSVF 222
            G V+RVYLVEED +  R RKK GGN+GK+Y EGWVEF+DKK A+ +A+ LNN  IGG+KR++Y +D+WN+KYL+KFKW HLTEK+AYE+RVR QKLRLE MQAK+ENA Y+ELVE G+   KMEE+                       RA  +     +P+P          +   +IRR FKQ     ++ G      +  ++LRSVF
Sbjct:    1 GEVTRVYLVEEDASVARRRKKNGGNTGKKYVEGWVEFDDKKTAKLVAQHLNNKQIGGKKRHFYREDIWNIKYLKKFKWRHLTEKIAYEKRVREQKLRLEMMQAKKENAEYIELVEKGKKIQKMEEK-----------------------RAKKNKGSGNEPSPT----TAEKEERPSKIRRTFKQLKGSNELTGDTKNARVGDSLLRSVF 183          
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A8K1FEZ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEZ1_PYTOL)

HSP 1 Score: 179 bits (453), Expect = 2.060e-52
Identity = 84/139 (60.43%), Postives = 109/139 (78.42%), Query Frame = 0
Query:    1 MKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 139
            MKP K+KHL+ ++G ++R+YLV ED+  ++ R  AGGN   +YTEGWVEFE+KK+A+ +A  LN   IGGRKR+YYHDD+WNLKYL+ FKW+HLTEK+AYE R+R QKLR+E  QAK+EN  Y+E VE  + F KMEER
Sbjct:   57 MKPEKLKHLLSKYGDINRIYLVPEDKVQQKKRVAAGGNRKTKYTEGWVEFENKKVAKTVATMLNTKQIGGRKRDYYHDDIWNLKYLKGFKWEHLTEKIAYENRIRDQKLRMEIAQAKKENDAYLERVEQSKQFTKMEER 195          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDQ8_9PHAE8.290e-10176.56RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRK9_ECTSI6.570e-5874.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4BVT2_PYTIN1.030e-5564.03Pre-rRNA-processing protein ESF2 n=1 Tax=Pythium i... [more]
A0A5D6Y296_9STRA1.260e-5464.03RRM domain-containing protein n=1 Tax=Pythium bras... [more]
K3WDP5_GLOUD4.710e-5462.59RRM domain-containing protein n=1 Tax=Globisporang... [more]
H3HB09_PHYRM3.430e-5360.43RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A0P1B2U2_PLAHL7.880e-5361.15Pre-rrna-processing protein esf2 n=1 Tax=Plasmopar... [more]
D0MVG4_PHYIT9.150e-5360.43Pre-rRNA-processing protein ESF2 n=2 Tax=Phytophth... [more]
A0A7S3US98_HETAK1.890e-5247.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1FEZ1_PYTOL2.060e-5260.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 97..117
NoneNo IPR availablePANTHERPTHR12311:SF7ACTIVATOR OF BASAL TRANSCRIPTION 1coord: 1..203
IPR039119ABT1/Esf2PANTHERPTHR12311FAMILY NOT NAMEDcoord: 1..203
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1567contigL-elsbetiae_contig1567:1462..4546 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1567.3964.1mRNA_L-elsbetiae_contig1567.3964.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1567 1348..5154 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1567.3964.1 ID=prot_L-elsbetiae_contig1567.3964.1|Name=mRNA_L-elsbetiae_contig1567.3964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
MKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEF
EDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAY
ERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERKRKRREDNPPP
AAPPAGAADGNDRASGDGAQARKPAPAGKGAGGGVGDSHQRIRRRFKQSS
PVADVGGGGGGGMDSTVLRSVFGGRGGDGGRKNTKDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039119ABT1/Esf2
IPR035979RBD_domain_sf