mRNA_L-elsbetiae_contig10375.396.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10375.396.1
Unique NamemRNA_L-elsbetiae_contig10375.396.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10375.396.1 vs. uniprot
Match: A0A6H5K5C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C4_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 7.970e-73
Identity = 121/127 (95.28%), Postives = 126/127 (99.21%), Query Frame = 2
Query:    2 YTQKGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIPMDLPPVNNQPALEFLDSAYMLWDNTVNKAYRIKGEIQPLQNAAADGVRKDIASFGEEVKAFVSLFQRTAPFA 382
            YTQKGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIP+DLPPVN QPALEFLDSAYMLWDNTVNKAYR+KGEIQPLQNAAADGVRKDIA+FGEEVKAFV+LF+RTAPFA
Sbjct:  311 YTQKGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIPVDLPPVNKQPALEFLDSAYMLWDNTVNKAYRVKGEIQPLQNAAADGVRKDIANFGEEVKAFVALFKRTAPFA 437          
BLAST of mRNA_L-elsbetiae_contig10375.396.1 vs. uniprot
Match: D7FLQ8_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ8_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 8.460e-73
Identity = 121/127 (95.28%), Postives = 126/127 (99.21%), Query Frame = 2
Query:    2 YTQKGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIPMDLPPVNNQPALEFLDSAYMLWDNTVNKAYRIKGEIQPLQNAAADGVRKDIASFGEEVKAFVSLFQRTAPFA 382
            YTQKGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIP+DLPPVN QPALEFLDSAYMLWDNTVNKAYR+KGEIQPLQNAAADGVRKDIA+FGEEVKAFV+LF+RTAPFA
Sbjct: 1309 YTQKGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIPVDLPPVNKQPALEFLDSAYMLWDNTVNKAYRVKGEIQPLQNAAADGVRKDIANFGEEVKAFVALFKRTAPFA 1435          
BLAST of mRNA_L-elsbetiae_contig10375.396.1 vs. uniprot
Match: A0A482T3Q5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3Q5_9ARCH)

HSP 1 Score: 122 bits (305), Expect = 1.890e-29
Identity = 55/126 (43.65%), Postives = 84/126 (66.67%), Query Frame = 2
Query:   11 KGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIPMDLPPVNNQPALEFLDSAYMLWDNTVNKAYRIKGEIQPLQNAAADGVRKDIASFGEEVKAFVSLFQRTAPFAAP 388
            KGL+  +   ++D +M  ++HI +VRK+ P ++ LF P+++ V LLK+ GI +D+P +  QPAL+FL+ + MLWDNTVNKA R+K  +QPLQ+   +G+RK++  F      FV  F+ T PF  P
Sbjct: 1103 KGLDINVEPGNRDALMQVLSHIHNVRKRMPEISSLFDPMQNIVTLLKANGISIDMPNIGGQPALDFLEHSKMLWDNTVNKALRVKENLQPLQSVMLEGIRKEVKQFNTNATKFVKDFRLTGPFQWP 1228          
BLAST of mRNA_L-elsbetiae_contig10375.396.1 vs. uniprot
Match: F0XZT7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZT7_AURAN)

HSP 1 Score: 112 bits (281), Expect = 3.310e-26
Identity = 59/127 (46.46%), Postives = 80/127 (62.99%), Query Frame = 2
Query:   11 KGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIPMDLPPVNNQPALEFLDSAYMLWDNTVNKAYRIKGEIQPLQNAAADGVRKDIASFGEEVKAFVSLFQRT-APFAAP 388
            +GL+  +   DK  +MS MTHIRDVRK+ P +   F PL++ VLLLK+ GI +DL  V    AL+FL+ A + WDN VNK +R+K  IQPLQNA  D +++DIA + E V+     F+    PF  P
Sbjct: 1175 RGLDQVVEEGDKATLMSVMTHIRDVRKRMPTMDDTFVPLREMVLLLKTHGITLDLGKVGADDALDFLERAPLQWDNVVNKTFRVKESIQPLQNAMVDTIKRDIADYVERVRVAHKKFREAEGPFTWP 1301          
BLAST of mRNA_L-elsbetiae_contig10375.396.1 vs. uniprot
Match: A0A8J2SDE7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDE7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.140e-25
Identity = 61/130 (46.92%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   14 GLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIPMDLPPVNNQPALEFLDSAYMLWDNTVNKAYRIKGEIQPLQNAAADGVRKDIASFGEEVKAFVSLFQRTAPFAAPTGPRD 403
            GL+  +   DK+ +MS M+HIRDVR++ P +   F PL++TV LLKS  I +DL  V  + AL+FL+ A + WDNTVNK +R+K  IQPLQNA  D +++DIA +   VK     F R AP    T P D
Sbjct: 1154 GLDQEVDDGDKETLMSVMSHIRDVRQRMPGMEATFVPLRETVELLKSNAIELDLGLVGEEEALDFLERAPLAWDNTVNKTFRVKESIQPLQNAMVDFIKRDIADYVSRVKLAHREF-RDAPHGPFTWPSD 1282          
BLAST of mRNA_L-elsbetiae_contig10375.396.1 vs. uniprot
Match: K3X373_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X373_GLOUD)

HSP 1 Score: 100 bits (248), Expect = 9.190e-22
Identity = 50/132 (37.88%), Postives = 83/132 (62.88%), Query Frame = 2
Query:   11 KGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIPMDLPPVNNQPALEFLDSAYMLWDNTVNKAYRIKGEIQPLQNAAADGVRKDIASFGEEVKAFVSLFQRTAPFAAPTGPRDS 406
            KGLE  ++ ++K+ +M  MTHIRDVRK+      +F PL++ V LLK  GI ++   +++    ++L++A M W+  VNK ++ K EI PLQ A  + ++ D+ SF +E++ F + F+ TAPF+    P D+
Sbjct:  983 KGLEEQVAEKNKEALMRVMTHIRDVRKQMDSTNEIFDPLREAVHLLKLHGINVEDTKISDHAIQDYLEAAPMQWEGIVNKTFKKKEEIMPLQMAEVESIKVDLESFYQEMRKFRAEFRSTAPFSFQGTPDDA 1114          
BLAST of mRNA_L-elsbetiae_contig10375.396.1 vs. uniprot
Match: A0A662WQ17_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQ17_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.270e-21
Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 2
Query:   11 KGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIPMDLPPVNNQPALEFLDSAYMLWDNTVNKAYRIKGEIQPLQNAAADGVRKDIASFGEEVKAFVSLFQRTAPFAAPTGPRDSSA 412
            KGLE  ++ ++K  +M  MTHIRDVRK+      LF PL++ V LLK  GI ++   + +    ++L++A M W+  VNK ++ K EI PLQ    D +++D+ SF  E++ F + F+ TAPF     P D+ A
Sbjct: 1066 KGLEEQVAEKNKGALMRVMTHIRDVRKQMDATNELFDPLREAVHLLKLHGINVEDTKIADHAIQDYLEAAPMQWEGIVNKTFKKKEEIMPLQMTEVDAIKEDLESFYLEMRKFRTEFRTTAPFGFQGAPSDAYA 1199          
BLAST of mRNA_L-elsbetiae_contig10375.396.1 vs. uniprot
Match: A0A6A4E4A7_9STRA (Dynein beta chain, flagellar outer arm (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E4A7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.490e-20
Identity = 50/134 (37.31%), Postives = 82/134 (61.19%), Query Frame = 2
Query:   11 KGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIPMDLPPVNNQPALEFLDSAYMLWDNTVNKAYRIKGEIQPLQNAAADGVRKDIASFGEEVKAFVSLFQRTAPFAAPTGPRDSSA 412
            KGLE  ++ ++KD +   MTHIRDVRK+      LF PL++ V LLK  GI ++   + +    ++L++A M W+  VNK ++ K EI PLQ A  + +++++ SF  +++ F + F+ TAPF+    P D+ A
Sbjct: 1103 KGLEEQVADKNKDALKRVMTHIRDVRKQMDATNELFDPLREAVHLLKLHGINVEDTKIGDHAVQDYLEAAPMQWEAIVNKTFKKKEEIMPLQMAEVESIKEELESFFLDMRKFRNEFRTTAPFSFQGTPNDAYA 1236          
BLAST of mRNA_L-elsbetiae_contig10375.396.1 vs. uniprot
Match: A0A5D6Y7I6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7I6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.490e-20
Identity = 50/134 (37.31%), Postives = 82/134 (61.19%), Query Frame = 2
Query:   11 KGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIPMDLPPVNNQPALEFLDSAYMLWDNTVNKAYRIKGEIQPLQNAAADGVRKDIASFGEEVKAFVSLFQRTAPFAAPTGPRDSSA 412
            +GLE  +  ++K+ +M  MTHIRDVRK+    + +F PL+  V LLK+ GI ++   +      ++L++A M W+  VNK ++ K EI PLQ A  D +++D+ +F  +++ F S F+ TAPF+    P D+ A
Sbjct: 1115 RGLEEQVGEKNKEALMRVMTHIRDVRKQMDATSEVFEPLRAAVHLLKTHGINVEDTKIAGHAVQDYLEAAPMQWEGIVNKTFKKKEEILPLQMAEVDSIKEDLEAFYLDMRRFRSDFRATAPFSFQGAPADAYA 1248          
BLAST of mRNA_L-elsbetiae_contig10375.396.1 vs. uniprot
Match: A0A329S004_9STRA (Dynein beta chain, flagellar outer arm n=23 Tax=Peronosporaceae TaxID=4777 RepID=A0A329S004_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.500e-20
Identity = 50/134 (37.31%), Postives = 82/134 (61.19%), Query Frame = 2
Query:   11 KGLETPLSAEDKDGIMSTMTHIRDVRKKAPMVTGLFGPLKDTVLLLKSRGIPMDLPPVNNQPALEFLDSAYMLWDNTVNKAYRIKGEIQPLQNAAADGVRKDIASFGEEVKAFVSLFQRTAPFAAPTGPRDSSA 412
            KGLE  ++ ++KD +   MTHIRDVRK+      LF PL++ V LLK  GI ++   + +    ++L++A M W+  VNK ++ K EI PLQ A  + +++++ SF  +++ F + F+ TAPF+    P D+ A
Sbjct: 1107 KGLEEQVADKNKDALKRVMTHIRDVRKQMDATNELFDPLREAVHLLKLHGINVEDTKIGDHAVQDYLEAAPMQWEAIVNKTFKKKEEIMPLQMAEVESIKEELESFFLDMRKFRNEFRTTAPFSFQGTPNDAYA 1240          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10375.396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5C4_9PHAE7.970e-7395.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLQ8_ECTSI8.460e-7395.28Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A482T3Q5_9ARCH1.890e-2943.65Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
F0XZT7_AURAN3.310e-2646.46Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SDE7_9STRA1.140e-2546.92Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
K3X373_GLOUD9.190e-2237.88Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662WQ17_9STRA2.270e-2138.81Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A6A4E4A7_9STRA1.490e-2037.31Dynein beta chain, flagellar outer arm (Fragment) ... [more]
A0A5D6Y7I6_9STRA1.490e-2037.31Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A329S004_9STRA1.500e-2037.31Dynein beta chain, flagellar outer arm n=23 Tax=Pe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10375contigL-elsbetiae_contig10375:689..3630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size423
Cds size420
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10375.396.1prot_L-elsbetiae_contig10375.396.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10375 689..3628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.4708595-CDS-L-elsbetiae_contig10375:688..7221622815264.4708595-CDS-L-elsbetiae_contig10375:688..722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10375 689..722 +
1691682804.7774842-CDS-L-elsbetiae_contig10375:688..7221691682804.7774842-CDS-L-elsbetiae_contig10375:688..722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10375 689..722 +
1622815264.4822805-CDS-L-elsbetiae_contig10375:1091..12501622815264.4822805-CDS-L-elsbetiae_contig10375:1091..1250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10375 1092..1250 +
1691682804.786397-CDS-L-elsbetiae_contig10375:1091..12501691682804.786397-CDS-L-elsbetiae_contig10375:1091..1250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10375 1092..1250 +
1622815264.4914532-CDS-L-elsbetiae_contig10375:2391..25351622815264.4914532-CDS-L-elsbetiae_contig10375:2391..2535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10375 2392..2535 +
1691682804.7983391-CDS-L-elsbetiae_contig10375:2391..25351691682804.7983391-CDS-L-elsbetiae_contig10375:2391..2535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10375 2392..2535 +
1622815264.5040622-CDS-L-elsbetiae_contig10375:3545..36281622815264.5040622-CDS-L-elsbetiae_contig10375:3545..3628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10375 3546..3628 +
1691682804.8085043-CDS-L-elsbetiae_contig10375:3545..36281691682804.8085043-CDS-L-elsbetiae_contig10375:3545..3628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10375 3546..3628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10375.396.1

>prot_L-elsbetiae_contig10375.396.1 ID=prot_L-elsbetiae_contig10375.396.1|Name=mRNA_L-elsbetiae_contig10375.396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
VHPEGAGDTPVGRGQGRNHVHDDPYPGRSQESPHGHRPLRPPEGHRAAAQ
EQRDSDGLASGQQPAGPGVPRLGVHALGQHREQGVPDQGGDTAAAERRRR
RRAKGHRQLRGGGEGLRVPLPANGALRGPDGAARFLGGRP
back to top

mRNA from alignment at L-elsbetiae_contig10375:689..3630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10375.396.1 ID=mRNA_L-elsbetiae_contig10375.396.1|Name=mRNA_L-elsbetiae_contig10375.396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2942bp|location=Sequence derived from alignment at L-elsbetiae_contig10375:689..3630+ (Laminarionema elsbetiae ELsaHSoW15)
GTACACCCAGAAGGGGCTGGAGACACCCCTGTCGGTGAGCGATTGAGTGC GTGTGGTGCGCACGCGCGCTGGGAGAGGAGGGTAGCATGCGGCGATTTAA AAAGTCATTTCAGAGCTATGTACAACCCTCTCAGCTGCATGGTATACCAC TGCGCCCCCTCGAAACAAGCTTTAGGGCTTGGTTAAAAGGACAACTACAA CGGGGGACGGTGCTTAGAATGACCGACCCGTTGTGGTGGCTGTTGTTGTC GTTGTTATTGTTGTTGTTGTTGTTGCTGTCTCTTCACATTAAAAACCATT CCGATCTCTCTACCCAGTACCTCCGTACATATGTCCGCACATGGCCCAAC ACTGACGCGGTCGATTCCCATGGACTGGAAAAATCGGAAAACAAAAAACG CAGGCCGAGGACAAGGACGGAATCATGTCCACGATGACCCATATCCGGGA CGTTCGCAAGAAAGCCCCCATGGTCACCGGCCTCTTCGGCCCCCTGAAGG ACACCGTGCTGCTGCTCAAGAGCAGAGGGATTCCGATGGACTTGCCTCCG GTCAACAACCAGGTAGCGCTCGCGTTCACGCTATTTACGTGCGTACGTAC GCTGTAGGGGACACAAGATACTTCACACAGATTTTCAAAGCTCGATTCTC CCCAGCAAGAAGAGTGCCAGTGCTGAAAGGGGGTGGTGTTGGAAAGATCC GGTCGAGGGCTGTCCGAAACTGTGGGTCGTGCGGTGCCGGCAACTCTCTT CGTTACGGAGTAATGGCGCTCTAAAAGTCGTGTCTTGTGTCTTGTGTCAC CTACGGTAGGCCATCTATTTATTTTTAGCGTTGTCGGCTTGTCGCCGTCG ACAGCTACATGATGATAGTCCACCTGCTTTGGAGCTTCCTCCCTGCGATG AGCCGGGGTCGGTGCCGAAACGGATGTTTTTCGCTCCTGGCGCTCGCTTG TGGAGTCGCTCCTCGCACCCCCCTCGCCCATAGCCGCTGCCTACCACGAA GACAAGAAGACTCTAAATATCTACGTTACTTCGTGGTTACCGTGTGTGGT CTGTGCACGAAACCTCTGGATTCAGTACGCTCTTGAAGACTCACCCATCT CTCCTTGTCAGTATCCGCTGTACAATAGGCACGCGCTGGTTGCGACACGC GCAGCAGCAGCAGGATCGCCTTCGCGGAGAATTCCTGTCTATTTAGGAAA TAATAGACAGGGGTTCCGTGACCCTAACCCGAACCCTAACTCTAACCCCA AACCGACCCCCCATTAGCCGTTTTCATACTTTATCCCACATGATTTCTTC CAGTAACAACCTGCGAAGGCTAGTGCAGCAGCAGCAGAAGTAGCAGCAGC AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG CAGCAGCAGCAGTAGCAGTAGCAGCAGATGCAGATGCAGATGCAGCGAGA ACGTTGAACATCCTAAGCCAACGACGAGCCGTGTTTCAGACGTGAAAAAC ACTACTCTTTCTTTCCCATGTAGATCGCCAACGAACGAAAAAAAAACACC AGACACGGCCTTCTTTTTCATCAAAACCCGCCAGACAAACAAAGCAAACA AATAAACACGCCATTTTCGCTCTATCCGCACTGCCGTGTGCATGCATGCA TGCATGCGTTCTTCTGTGCCACCACGCGTGCCGCCGCGCGGGCGGACATG CAGCCGGCCCTGGAGTTCCTCGACTCGGCGTACATGCTCTGGGACAACAC CGTGAACAAGGCGTACCGGATCAAGGGGGAGATACAGCCGCTGCAGAACG CCGCCGCCGACGGCGTGCGAAAGGACATCGCCAGCTTCGGGGAGGAGGTA GGTGCGGCGGCGTCGCTTTTTTTTTTCTCCTTCGTTTTACTCTTTTTTTT TTTAATCAGCGCCGACGGCATCGGGAGGGACATCGCCAGCTTCGGGGAAG AGATAGGTACGGCGTCGCTTTGTTTGCCCTTAATTTCGCTTGATTTTCGT TAGTTAAATCAGCGCCAAAATCTCCAGCGCGGTCGGTCTACGTCCCAAGC CGTAAAAAACGCCGTCCCACGGAAAACGTTGTGTCCCATGAAAACGTCGT CCCATGGAAAGCGTAGTGTCCCGGGGGGGCGACTGGAGTAGCCACAAAAA CCCGCCCCCAGCCGCCCCCCAGCTGCATTTGTGCGTTGTAGGCTTTCGCC TTCACACTACCACCGCCTCGTTGCTGCTGCTTTCACGTACGTACAGCCCC GAGAGAGACGCTTGGGCAAGAGTTTCCCCCGCGCCCTCTTCCTTGTTCTC GCGTACATATTGTAGCGTACATATATATTTCCCACCCATCATTGGCATGT TTGTCGTCTGCCCCACTGGCCCCCATCCTTCACTACGACATATGTACAAC CCTCGAGGTGTCGTATCCGTATTCGCTCGCGCGCACCGCGAGGATGACCA GCGGCCATCACCTGCTCTAGCGTCGAAAACTCAGACTTGGGGCTAGCTCT TGGACGTGCACGTGGACGGCGGCCACCATCTGCTCTAACGCCGAGATTTT AGGCCAGCGCTCTAGACGTGCATGCTATCTCACGTGCTCGCAGGATATAC CCAGTATTTGTCCTTGTGGGTCTCAGAAGCGAGTGCTACGGTGAAGATTC CCGTCCCCCCGAAGGAGTCGTCCGAGATATATGTACGCCAAAGCACAAAG CTGACCCCTTCTTTCCCGAGCGCGTGCGTATGTTTCTTGCCTGTATGATT CCGTCGTGTCGCCGATGACGTCCAAGAACATCCAACCTGCTGCTCTGTGC CGCGCTACCGCCGCCTCCCCGGCCCTGACACGAATCGCTCCGGCAAACGC TGAACAGGTGAAGGCCTTCGTGTCCCTCTTCCAGCGAACGGCGCCCTTCG CGGCCCCGACGGGGCCGCGAGATTCCTCGGCGGCCGACCCCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10375:689..3630+

>mRNA_L-elsbetiae_contig10375.396.1 ID=mRNA_L-elsbetiae_contig10375.396.1|Name=mRNA_L-elsbetiae_contig10375.396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig10375:689..3630+ (Laminarionema elsbetiae ELsaHSoW15)
GTACACCCAGAAGGGGCTGGAGACACCCCTGTCGGTACACCCAGAAGGGG
CTGGAGACACCCCTGTCGGCCGAGGACAAGGACGGAATCATGTCCACGAT
GACCCATATCCGGGACGTTCGCAAGAAAGCCCCCATGGTCACCGGCCTCT
TCGGCCCCCTGAAGGACACCGTGCTGCTGCTCAAGAGCAGAGGGATTCCG
ATGGACTTGCCTCCGGTCAACAACCAGGCCGAGGACAAGGACGGAATCAT
GTCCACGATGACCCATATCCGGGACGTTCGCAAGAAAGCCCCCATGGTCA
CCGGCCTCTTCGGCCCCCTGAAGGACACCGTGCTGCTGCTCAAGAGCAGA
GGGATTCCGATGGACTTGCCTCCGGTCAACAACCAGCCGGCCCTGGAGTT
CCTCGACTCGGCGTACATGCTCTGGGACAACACCGTGAACAAGGCGTACC
GGATCAAGGGGGAGATACAGCCGCTGCAGAACGCCGCCGCCGACGGCGTG
CGAAAGGACATCGCCAGCTTCGGGGAGGAGCCGGCCCTGGAGTTCCTCGA
CTCGGCGTACATGCTCTGGGACAACACCGTGAACAAGGCGTACCGGATCA
AGGGGGAGATACAGCCGCTGCAGAACGCCGCCGCCGACGGCGTGCGAAAG
GACATCGCCAGCTTCGGGGAGGAGGTGAAGGCCTTCGTGTCCCTCTTCCA
GCGAACGGCGCCCTTCGCGGCCCCGACGGGGCCGCGAGATTCCTCGGCGG
CCGACCCGTGAAGGCCTTCGTGTCCCTCTTCCAGCGAACGGCGCCCTTCG
CGGCCCCGACGGGGCCGCGAGATTCCTCGGCGGCCGACCC
back to top