mRNA_L-elsbetiae_contig1565.3956.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1565.3956.1
Unique NamemRNA_L-elsbetiae_contig1565.3956.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1565.3956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1565contigL-elsbetiae_contig1565:21176..22713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.7617142-CDS-L-elsbetiae_contig1565:21175..213771622815641.7617142-CDS-L-elsbetiae_contig1565:21175..21377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1565 21176..21377 -
1691683009.0731416-CDS-L-elsbetiae_contig1565:21175..213771691683009.0731416-CDS-L-elsbetiae_contig1565:21175..21377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1565 21176..21377 -
1622815641.7753694-CDS-L-elsbetiae_contig1565:22606..227131622815641.7753694-CDS-L-elsbetiae_contig1565:22606..22713Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1565 22607..22713 -
1691683009.0815332-CDS-L-elsbetiae_contig1565:22606..227131691683009.0815332-CDS-L-elsbetiae_contig1565:22606..22713Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1565 22607..22713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1565.3956.1prot_L-elsbetiae_contig1565.3956.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1565 21176..22713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1565.3956.1

>prot_L-elsbetiae_contig1565.3956.1 ID=prot_L-elsbetiae_contig1565.3956.1|Name=mRNA_L-elsbetiae_contig1565.3956.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
GPRVERGPGRGEGGLPRGGGGEGLWWTCGAWSIMGRREKQEDRFCVMPDF
TKSVARLFLDESSPAGAGGGSGGGGSVGCFSVGFDDCSSSGGAAAAAAGG
LEG
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mRNA from alignment at L-elsbetiae_contig1565:21176..22713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1565.3956.1 ID=mRNA_L-elsbetiae_contig1565.3956.1|Name=mRNA_L-elsbetiae_contig1565.3956.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1538bp|location=Sequence derived from alignment at L-elsbetiae_contig1565:21176..22713- (Laminarionema elsbetiae ELsaHSoW15)
GGGCCCCGCGTGGAACGGGGACCTGGAAGAGGAGAGGGGGGGTTGCCTCG
TGGGGGCGGCGGAGAAGGGTTGTGGTGGACATGCGGGGCTTGGTCAATCA
TGGGGAGGTGAGCCGTTGTGGAGGGAGACAGCCGCGACTACTTCCGGCGT
CTTGTTGGCGGAGAGGGGAGCTTGAGGGGGTGTCGTTATTGAAAAAAGGC
ACGTGTAGTCTGTGTCGATGCAAAGCGTGGTTTAAGCCTGCGTTCGTGGG
AAATACTACATGTAGTGTATGTTTCCGCAAAGCGTGGGTTAAAACTGCGT
TCGTGGGATAGTACGTGTAGTCTGTGTTGCCGCAAAGCGTGGTTCAAGCC
TGCGTTCGTGGGATAATATGTATGTTGCCGCAAAGCGTGGGTTAAACCTG
CGTTCGTGGGATAGTACATGCAGTCTGTGTTGCCGCAAAGCGTGGTTTAA
GCCTGCGTTATGTTGCCGCAAAGCGTGGGTTAAACCTGCGTTCTTGGGAT
AGTACATGCAGTCTGTGTTGCCGCAAAGCGTGGTTTAAGCCTGCGTTCGT
GGGATAATACTACATGTAGTCTGTGTCGCCGCAAAGTGTGGTTTAAACCT
GCGTTCTTGGGATAGTACATGTGGTCTGTGTTGCCGCAAAGCGTGGTTTA
AGCCTGCGTTCGTGGGGTATTAAATGCAGTCTGCGTTGCCGCAAAGCGTG
GTTTAAGCCTGCGTTCGTGGGGTATTACATGCAGTCTGTGTTGCCGCAAA
GCGTGGTTTAAACCTGCGTTTGTGGGATATTTAGAGGGCTAACGATAAGG
GGAGGTGCAAAACCGTCGTATGTATCCTTATCCTTGAAACGTTTTCTCTA
TGGCCACATCGCACGACGTATACCTACCCCCCCCCCGTGCATTGACTGCT
ACATGACACTCTGCGCTCAACAAACCTTGAGCCTTTTTTGTCCTCCTCGA
CACACACACGCCGTTGCCGCACGGCAGGAGACTGCGGGCGATGTCGAGCC
TTTTCCGCACCAGACACGCCTCTTGGGGGGATCTGTTTCATTGTGTATCT
AGACATATACATATGCTGTACCTATGTCGAGCATACCCTAGTTACTCGGT
TTGTTAGCCAGTGACGTCCACGCCTCATATCGACCGCATCATGCGGTTAT
ACGAGTATCTACGTACATATACACGGAGCCCCGAGTAGATAGATCGGAAA
CGGCTTTTAATGTGGTGACAGCAACAACAACGACAATAACAGCAACGACA
ACAACAACAACAACAACGGGACTGTCAGCAGGACCGTCAACAATTTAACA
CCGCACCGAATGGAACAACACGGCGCTCTCTGGCAGGCGCGAGAAGCAAG
AGGACCGGTTCTGCGTCATGCCGGACTTCACCAAGTCCGTCGCGCGCCTG
TTCCTAGACGAGAGCTCCCCGGCCGGCGCCGGCGGCGGCAGCGGCGGAGG
GGGCTCAGTGGGGTGCTTCAGCGTCGGTTTCGACGATTGTTCTTCGTCCG
GGGGCGCCGCCGCCGCCGCCGCCGGTGGTCTAGAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1565:21176..22713-

>mRNA_L-elsbetiae_contig1565.3956.1 ID=mRNA_L-elsbetiae_contig1565.3956.1|Name=mRNA_L-elsbetiae_contig1565.3956.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig1565:21176..22713- (Laminarionema elsbetiae ELsaHSoW15)
GGGCCCCGCGTGGAACGGGGACCTGGAAGAGGAGAGGGGGGGTTGCCTCG
TGGGGGCGGCGGAGAAGGGTTGTGGTGGACATGCGGGGCTTGGTCAATCA
TGGGGAGGGGCCCCGCGTGGAACGGGGACCTGGAAGAGGAGAGGGGGGGT
TGCCTCGTGGGGGCGGCGGAGAAGGGTTGTGGTGGACATGCGGGGCTTGG
TCAATCATGGGGAGGCGCGAGAAGCAAGAGGACCGGTTCTGCGTCATGCC
GGACTTCACCAAGTCCGTCGCGCGCCTGTTCCTAGACGAGAGCTCCCCGG
CCGGCGCCGGCGGCGGCAGCGGCGGAGGGGGCTCAGTGGGGTGCTTCAGC
GTCGGTTTCGACGATTGTTCTTCGTCCGGGGGCGCCGCCGCCGCCGCCGC
CGGTGGTCTAGAGGGCGCGCGAGAAGCAAGAGGACCGGTTCTGCGTCATG
CCGGACTTCACCAAGTCCGTCGCGCGCCTGTTCCTAGACGAGAGCTCCCC
GGCCGGCGCCGGCGGCGGCAGCGGCGGAGGGGGCTCAGTGGGGTGCTTCA
GCGTCGGTTTCGACGATTGTTCTTCGTCCGGGGGCGCCGCCGCCGCCGCC
GCCGGTGGTCTAGAGGGC
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