mRNA_L-elsbetiae_contig10374.395.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10374.395.1
Unique NamemRNA_L-elsbetiae_contig10374.395.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10374.395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10374contigL-elsbetiae_contig10374:2184..2704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10374.395.1prot_L-elsbetiae_contig10374.395.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10374 2274..2618 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.4135919-UTR-L-elsbetiae_contig10374:2183..22731622815264.4135919-UTR-L-elsbetiae_contig10374:2183..2273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10374 2184..2273 +
1691682804.7514505-UTR-L-elsbetiae_contig10374:2183..22731691682804.7514505-UTR-L-elsbetiae_contig10374:2183..2273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10374 2184..2273 +
1622815264.4357095-UTR-L-elsbetiae_contig10374:2618..27041622815264.4357095-UTR-L-elsbetiae_contig10374:2618..2704Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10374 2619..2704 +
1691682804.7691638-UTR-L-elsbetiae_contig10374:2618..27041691682804.7691638-UTR-L-elsbetiae_contig10374:2618..2704Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10374 2619..2704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.4262085-CDS-L-elsbetiae_contig10374:2273..26181622815264.4262085-CDS-L-elsbetiae_contig10374:2273..2618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10374 2274..2618 +
1691682804.7608597-CDS-L-elsbetiae_contig10374:2273..26181691682804.7608597-CDS-L-elsbetiae_contig10374:2273..2618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10374 2274..2618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10374.395.1

>prot_L-elsbetiae_contig10374.395.1 ID=prot_L-elsbetiae_contig10374.395.1|Name=mRNA_L-elsbetiae_contig10374.395.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MCRFALAPSSLRSNGALKVGPGAGCGILLHIRYVVCCTYGMLFVDEFSPV
KARFVRSGEKNNASFIETAKFVRRVTQGGGRRILAGTPLKERSCRALHRK
ASSPRREWGAKEIA*
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mRNA from alignment at L-elsbetiae_contig10374:2184..2704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10374.395.1 ID=mRNA_L-elsbetiae_contig10374.395.1|Name=mRNA_L-elsbetiae_contig10374.395.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=521bp|location=Sequence derived from alignment at L-elsbetiae_contig10374:2184..2704+ (Laminarionema elsbetiae ELsaHSoW15)
TATGTTCAAAGCCCGATCCCTCCCCAGCAAGAAGAGCGTCATGCCGAAAA
GGGGTGGCGTTGCAAAGATCTCGTCAAGGGCTGTCTGAAAATGTGTCGAT
TTGCGCTGGCACCCTCTTCGTTACGGAGTAATGGAGCTCTAAAAGTCGGT
CCAGGGGCGGGATGTGGTATCTTGTTGCACATACGGTATGTTGTTTGTTG
CACATACGGTATGTTGTTTGTGGATGAATTTAGTCCCGTAAAGGCGAGGT
TTGTTCGAAGCGGAGAGAAGAACAATGCCAGTTTCATTGAAACCGCCAAA
TTTGTCCGTAGAGTCACCCAGGGGGGGGGTAGAAGGATTCTGGCAGGGAC
CCCATTGAAGGAAAGATCATGTCGAGCACTCCACCGGAAAGCCAGTAGTC
CACGCAGAGAGTGGGGCGCCAAAGAGATAGCGTAGAATCAGAGAGTAAGT
GGACACGTAAGGGCTGAACGTCGCCGGGCCAGCTGAAGCAGGGCCGAGGA
GTCGAGCGCTCGAGTCCCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10374:2184..2704+

>mRNA_L-elsbetiae_contig10374.395.1 ID=mRNA_L-elsbetiae_contig10374.395.1|Name=mRNA_L-elsbetiae_contig10374.395.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig10374:2184..2704+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTCGATTTGCGCTGGCACCCTCTTCGTTACGGAGTAATGGAGCTCT
AAAAGTCGGTCCAGGGGCGGGATGTGGTATCTTGTTGCACATACGGTATG
TTGTTTGTTGCACATACGGTATGTTGTTTGTGGATGAATTTAGTCCCGTA
AAGGCGAGGTTTGTTCGAAGCGGAGAGAAGAACAATGCCAGTTTCATTGA
AACCGCCAAATTTGTCCGTAGAGTCACCCAGGGGGGGGGTAGAAGGATTC
TGGCAGGGACCCCATTGAAGGAAAGATCATGTCGAGCACTCCACCGGAAA
GCCAGTAGTCCACGCAGAGAGTGGGGCGCCAAAGAGATAGCGTAGATGTG
TCGATTTGCGCTGGCACCCTCTTCGTTACGGAGTAATGGAGCTCTAAAAG
TCGGTCCAGGGGCGGGATGTGGTATCTTGTTGCACATACGGTATGTTGTT
TGTTGCACATACGGTATGTTGTTTGTGGATGAATTTAGTCCCGTAAAGGC
GAGGTTTGTTCGAAGCGGAGAGAAGAACAATGCCAGTTTCATTGAAACCG
CCAAATTTGTCCGTAGAGTCACCCAGGGGGGGGGTAGAAGGATTCTGGCA
GGGACCCCATTGAAGGAAAGATCATGTCGAGCACTCCACCGGAAAGCCAG
TAGTCCACGCAGAGAGTGGGGCGCCAAAGAGATAGCGTAG
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