mRNA_L-elsbetiae_contig15634.3946.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15634.3946.1
Unique NamemRNA_L-elsbetiae_contig15634.3946.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15634.3946.1 vs. uniprot
Match: D7FI89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI89_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.130e-13
Identity = 34/53 (64.15%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 GYDGGDCCECTCSKTQDDDD----SGCSDGFQCIDPEAPCVDDDDITVEQVEN 147
            GYDGGDCCECTC    DDD+    S    GF CIDP APCV+DDDIT   VEN
Sbjct:    3 GYDGGDCCECTCESPWDDDNDWLCSSDGSGFACIDPAAPCVEDDDITAVMVEN 55
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BLAST of mRNA_L-elsbetiae_contig15634.3946.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.450e-13
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 GYDGGDCCECTCSKTQDDD------DSGCSDGFQCIDPEAPCVDDDDITVEQVEN 147
            GYDGGDCCECTC     DD       +GC +GF CIDP APCV+DDDIT++ VEN
Sbjct:  145 GYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDDITLDIVEN 199
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BLAST of mRNA_L-elsbetiae_contig15634.3946.1 vs. uniprot
Match: D7FI92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI92_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 5.720e-13
Identity = 35/50 (70.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 GYDGGDCCECTCSKTQDDDDSGCS-DGFQCIDPEAPCVDDDDITVEQVEN 147
            GYDGGDCCECTC  T      GC+ D F CID EAPCVDDDDIT E VEN
Sbjct:    8 GYDGGDCCECTCQVTNSG--WGCNPDYFACIDLEAPCVDDDDITAEMVEN 55
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BLAST of mRNA_L-elsbetiae_contig15634.3946.1 vs. uniprot
Match: D7FI91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI91_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.500e-12
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 GYDGGDCCECTCSKTQDDDD----SGC-SDGFQCIDPEAPCVDDDDITVEQVEN 147
            GYDGGDCCECTC +TQ DDD      C +D   C+DP+A CVDDDD+TVE VEN
Sbjct:   29 GYDGGDCCECTC-QTQSDDDFYYPENCDADYMACVDPDASCVDDDDVTVEMVEN 81
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BLAST of mRNA_L-elsbetiae_contig15634.3946.1 vs. uniprot
Match: A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.090e-12
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 GYDGGDCCECTCSKTQDDDDS---GCS-DGFQCIDPEAPCVDDDDITVEQVEN 147
            GYDGGDCCECTC +TQ DDD    GC+ D   CIDP+A CVDDDD+T E VEN
Sbjct:   51 GYDGGDCCECTC-QTQSDDDYYSWGCNKDYMACIDPDASCVDDDDVTAEMVEN 102
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BLAST of mRNA_L-elsbetiae_contig15634.3946.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.500e-12
Identity = 35/53 (66.04%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 GYDGGDCCECTCSKTQDDDDSG-CSD---GFQCIDPEAPCVDDDDITVEQVEN 147
            GYDGGDCCECTC     DDD   CS    GF CIDP+APCVDDDDIT+E  +N
Sbjct:   44 GYDGGDCCECTCQNPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQN 96
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BLAST of mRNA_L-elsbetiae_contig15634.3946.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.500e-12
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    4 YDGGDCCECTCSKTQDDDDSGCSDGFQCIDPEAPCVDDDDITVEQVEN 147
            YDGGDCCECTC   +DDD   C + F C+DP APCVDDD +T++ +EN
Sbjct:  304 YDGGDCCECTCESLEDDD-WACRNNFACVDPNAPCVDDDSVTIDMLEN 350
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BLAST of mRNA_L-elsbetiae_contig15634.3946.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-11
Identity = 34/49 (69.39%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 GYDGGDCCECTC-SKTQDDDDSGCSDGFQCIDPEAPCVDDDDITVEQVE 144
            GYDGGDCCECTC S   DDDD  C +   CIDP+APCVDDDDIT   VE
Sbjct:   93 GYDGGDCCECTCVSPWDDDDDWACRNYNACIDPDAPCVDDDDITAVMVE 141
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BLAST of mRNA_L-elsbetiae_contig15634.3946.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.570e-11
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 GYDGGDCCECTCSKTQDDDDSG-----CSDGFQCIDPEAPCVDDDDITVE 135
            GYDGGDCCECTC    DDD        C +GF CIDP APCV+DDDITV+
Sbjct:  124 GYDGGDCCECTCEVPTDDDWDNDLYVACGEGFACIDPSAPCVNDDDITVD 173
[Close]
BLAST of mRNA_L-elsbetiae_contig15634.3946.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 7.120e-11
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 GYDGGDCCECTCSKTQDDDDSGCSDGFQCIDPEAPCVDDDDITVEQVEN 147
            GYDGGDCCECTC    DDDD  C   F CIDP APCV+DDDITV+  +N
Sbjct:    9 GYDGGDCCECTCEG--DDDDYKCMQ-FSCIDPNAPCVNDDDITVDMFDN 54
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15634.3946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FI89_ECTSI2.130e-1364.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S4_ECTSI5.450e-1361.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI92_ECTSI5.720e-1370.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI91_ECTSI1.500e-1264.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2J7_9PHAE2.090e-1267.92LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI87_ECTSI5.500e-1266.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE5.500e-1260.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXR2_9PHAE1.400e-1169.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F9_ECTSI3.570e-1164.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S3_ECTSI7.120e-1167.35LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15634contigL-elsbetiae_contig15634:2646..2792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.108127-CDS-L-elsbetiae_contig15634:2645..27921622815641.108127-CDS-L-elsbetiae_contig15634:2645..2792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15634 2646..2792 +
1691683008.7007117-CDS-L-elsbetiae_contig15634:2645..27921691683008.7007117-CDS-L-elsbetiae_contig15634:2645..2792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15634 2646..2792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15634.3946.1prot_L-elsbetiae_contig15634.3946.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15634 2646..2792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15634.3946.1

>prot_L-elsbetiae_contig15634.3946.1 ID=prot_L-elsbetiae_contig15634.3946.1|Name=mRNA_L-elsbetiae_contig15634.3946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=49bp
GYDGGDCCECTCSKTQDDDDSGCSDGFQCIDPEAPCVDDDDITVEQVEN
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mRNA from alignment at L-elsbetiae_contig15634:2646..2792+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15634.3946.1 ID=mRNA_L-elsbetiae_contig15634.3946.1|Name=mRNA_L-elsbetiae_contig15634.3946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=147bp|location=Sequence derived from alignment at L-elsbetiae_contig15634:2646..2792+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTACGATGGTGGAGATTGCTGCGAGTGCACGTGCTCAAAGACGCAGGA
CGACGACGACTCCGGCTGCAGTGACGGGTTCCAGTGCATTGACCCGGAAG
CCCCCTGCGTGGACGACGACGACATCACCGTCGAGCAAGTCGAGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15634:2646..2792+

>mRNA_L-elsbetiae_contig15634.3946.1 ID=mRNA_L-elsbetiae_contig15634.3946.1|Name=mRNA_L-elsbetiae_contig15634.3946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=294bp|location=Sequence derived from alignment at L-elsbetiae_contig15634:2646..2792+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTACGATGGTGGAGATTGCTGCGAGTGCACGTGCTCAAAGACGCAGGA
CGACGACGACTCCGGCTGCAGTGACGGGTTCCAGTGCATTGACCCGGAAG
CCCCCTGCGTGGACGACGACGACATCACCGTCGAGCAAGTCGAGAACGGC
TACGATGGTGGAGATTGCTGCGAGTGCACGTGCTCAAAGACGCAGGACGA
CGACGACTCCGGCTGCAGTGACGGGTTCCAGTGCATTGACCCGGAAGCCC
CCTGCGTGGACGACGACGACATCACCGTCGAGCAAGTCGAGAAC
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