mRNA_L-elsbetiae_contig15630.3944.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15630.3944.1
Unique NamemRNA_L-elsbetiae_contig15630.3944.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15630.3944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15630contigL-elsbetiae_contig15630:168..761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size594
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15630.3944.1prot_L-elsbetiae_contig15630.3944.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15630 449..754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.003444-UTR-L-elsbetiae_contig15630:167..4481622815641.003444-UTR-L-elsbetiae_contig15630:167..448Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15630 168..448 +
1691683008.6572995-UTR-L-elsbetiae_contig15630:167..4481691683008.6572995-UTR-L-elsbetiae_contig15630:167..448Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15630 168..448 +
1622815641.0320456-UTR-L-elsbetiae_contig15630:754..7611622815641.0320456-UTR-L-elsbetiae_contig15630:754..761Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15630 755..761 +
1691683008.6750114-UTR-L-elsbetiae_contig15630:754..7611691683008.6750114-UTR-L-elsbetiae_contig15630:754..761Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15630 755..761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.0159855-CDS-L-elsbetiae_contig15630:448..7541622815641.0159855-CDS-L-elsbetiae_contig15630:448..754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15630 449..754 +
1691683008.6664977-CDS-L-elsbetiae_contig15630:448..7541691683008.6664977-CDS-L-elsbetiae_contig15630:448..754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15630 449..754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15630.3944.1

>prot_L-elsbetiae_contig15630.3944.1 ID=prot_L-elsbetiae_contig15630.3944.1|Name=mRNA_L-elsbetiae_contig15630.3944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MRDEQADTIRLGTSYRERLQLQLTRSARGRNFRSVPAHEVLSRAFIRQLH
QPEASNHHHHCCCLLGGMKTAATREVPILVQAKRQQGKKAKHECPPPPPR
C*
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mRNA from alignment at L-elsbetiae_contig15630:168..761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15630.3944.1 ID=mRNA_L-elsbetiae_contig15630.3944.1|Name=mRNA_L-elsbetiae_contig15630.3944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig15630:168..761+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCAAGCTGAGAGCTTGGGAAAAATGCATTCCCATCCAATATTTGTGTG
AAACCCGCGCTGCGCTGCGCTTCGCTGCGCTTCGCTGCGCTTCGTGTGAC
GAGAAATCCAGGCATGACAAATGGAGAGAGGACGAGGATTCCGCCTGGAG
TCACGCCAACGCCAGCCAGCCTGGAACAACAGCAGATGCAACAAGCTTTT
CAAATGCCCACCACAAAACAAGACTTTTAAGATTTGACCGTATAAAGGAC
CACCTCTAACAGGACGGACGGTCAATAGCTTATGAGAGATGAACAGGCAG
ACACAATTAGGCTAGGTACATCATACCGCGAAAGGCTACAGCTACAGCTT
ACACGGAGTGCTCGTGGACGAAACTTCCGGAGTGTCCCTGCTCACGAAGT
ACTCAGCCGCGCATTTATACGACAACTGCACCAACCAGAGGCTTCCAACC
ACCATCACCACTGTTGCTGCCTGCTGGGTGGTATGAAGACGGCAGCCACG
CGTGAAGTGCCGATTTTGGTCCAGGCAAAGCGACAGCAGGGCAAAAAGGC
AAAGCATGAATGCCCCCCGCCCCCCCCCAGGTGTTGAAGGAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15630:168..761+

>mRNA_L-elsbetiae_contig15630.3944.1 ID=mRNA_L-elsbetiae_contig15630.3944.1|Name=mRNA_L-elsbetiae_contig15630.3944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig15630:168..761+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGATGAACAGGCAGACACAATTAGGCTAGGTACATCATACCGCGA
AAGGCTACAGCTACAGCTTACACGGAGTGCTCGTGGACGAAACTTCCGGA
GTGTCCCTGCTCACGAAGTACTCAGCCGCGCATTTATACGACAACTGCAC
CAACCAGAGGCTTCCAACCACCATCACCACTGTTGCTGCCTGCTGGGTGG
TATGAAGACGGCAGCCACGCGTGAAGTGCCGATTTTGGTCCAGGCAAAGC
GACAGCAGGGCAAAAAGGCAAAGCATGAATGCCCCCCGCCCCCCCCCAGG
TGTTGAATGAGAGATGAACAGGCAGACACAATTAGGCTAGGTACATCATA
CCGCGAAAGGCTACAGCTACAGCTTACACGGAGTGCTCGTGGACGAAACT
TCCGGAGTGTCCCTGCTCACGAAGTACTCAGCCGCGCATTTATACGACAA
CTGCACCAACCAGAGGCTTCCAACCACCATCACCACTGTTGCTGCCTGCT
GGGTGGTATGAAGACGGCAGCCACGCGTGAAGTGCCGATTTTGGTCCAGG
CAAAGCGACAGCAGGGCAAAAAGGCAAAGCATGAATGCCCCCCGCCCCCC
CCCAGGTGTTGA
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