mRNA_L-elsbetiae_contig15610.3931.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15610.3931.1
Unique NamemRNA_L-elsbetiae_contig15610.3931.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15610.3931.1 vs. uniprot
Match: D8LGD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD4_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.640e-27
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1
Query:    1 MDHAVQRALGMGGHLDGPIKHPAHGAVASIRSPDGHMVGLFQPADQESL 147
            MDHAVQRALGMGGHLDGPIK+PAHGAVASIRSPDGHMVGLFQP DQE L
Sbjct:   32 MDHAVQRALGMGGHLDGPIKYPAHGAVASIRSPDGHMVGLFQPDDQEGL 80          
BLAST of mRNA_L-elsbetiae_contig15610.3931.1 vs. uniprot
Match: A0A6H5KTK2_9PHAE (VOC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.130e-26
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1
Query:    1 MDHAVQRALGMGGHLDGPIKHPAHGAVASIRSPDGHMVGLFQPADQESL 147
            MDHAVQRALGMGGHLDGPIK+PAHGAVASIRSPDGHMVGLFQP DQE L
Sbjct:   72 MDHAVQRALGMGGHLDGPIKYPAHGAVASIRSPDGHMVGLFQPDDQEGL 120          
BLAST of mRNA_L-elsbetiae_contig15610.3931.1 vs. uniprot
Match: A0A058ZFZ5_FONAL (VOC domain-containing protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZFZ5_FONAL)

HSP 1 Score: 74.7 bits (182), Expect = 8.060e-16
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1
Query:    1 MDHAVQRALGMGGHLDGPIKHPAHGAVASIRSPDGHMVGLFQPA 132
            MDHAVQ+A+ +GG +DGPIK+P  G VA+IRSPDGHM+GLF+PA
Sbjct:   87 MDHAVQQAMMLGGRMDGPIKYPITGRVAAIRSPDGHMIGLFEPA 130          
BLAST of mRNA_L-elsbetiae_contig15610.3931.1 vs. uniprot
Match: A0A7S2HIP9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HIP9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.830e-14
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 1
Query:    1 MDHAVQRALGMGGHLDGPIKHPAHGAVASIRSPDGHMVGLFQPA 132
            MD  V R   MGGHLDGPI++PAHG VA++RSP GHM+GL++PA
Sbjct:   97 MDGIVSRCAQMGGHLDGPIQYPAHGKVAALRSPQGHMIGLYEPA 140          
BLAST of mRNA_L-elsbetiae_contig15610.3931.1 vs. uniprot
Match: A0A7S1YTJ1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YTJ1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.260e-14
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1
Query:    1 MDHAVQRALGMGGHLDGPIKHPAHGAVASIRSPDGHMVGLFQPA 132
            MD+ + +   MGGHLDGPI++PAHG VA++RSP GHM+GL++PA
Sbjct:   91 MDNVIAKCAQMGGHLDGPIQYPAHGKVAALRSPQGHMIGLYEPA 134          
BLAST of mRNA_L-elsbetiae_contig15610.3931.1 vs. uniprot
Match: A0A7S4V0W5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V0W5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.930e-14
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1
Query:    1 MDHAVQRALGMGGHLDGPIKHPAHGAVASIRSPDGHMVGLFQPA 132
            MD+ + +   MGGHLDGPI++PAHG VA++RSP GHM+GL++PA
Sbjct:  127 MDNVIAKCAQMGGHLDGPIQYPAHGKVAALRSPQGHMIGLYEPA 170          
BLAST of mRNA_L-elsbetiae_contig15610.3931.1 vs. uniprot
Match: A0A2R5GWN9_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWN9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.660e-14
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    1 MDHAVQRALGMGGHLDGPIKHPAHGAVASIRSPDGHMVGLFQP 129
            MD  + R +G+G  LDGPIK+P  G VASIRSPDGHM+GLF+P
Sbjct:   85 MDMTIMRLMGLGARLDGPIKYPVEGKVASIRSPDGHMIGLFEP 127          
BLAST of mRNA_L-elsbetiae_contig15610.3931.1 vs. uniprot
Match: B7G5E8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5E8_PHATC)

HSP 1 Score: 69.3 bits (168), Expect = 1.630e-13
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 MDHAVQRALGMGGHLDGPIKHPAHGAVASIRSPDGHMVGLFQP 129
            MD  V     MGGHLDGPI++PAHG VA++R+PDGHM+GL++P
Sbjct:  110 MDDTVSACAQMGGHLDGPIQYPAHGKVAALRAPDGHMIGLYEP 152          
BLAST of mRNA_L-elsbetiae_contig15610.3931.1 vs. uniprot
Match: A0A7S0BXZ2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BXZ2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.030e-13
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1
Query:    1 MDHAVQRALGMGGHLDGPIKHPAHGAVASIRSPDGHMVGLFQPA 132
            MD  V R++ MG +LDGPI +PAHG VA+IR+PDGHM+GL++PA
Sbjct:   94 MDSVVARSVQMGANLDGPILYPAHGKVAAIRTPDGHMIGLYEPA 137          
BLAST of mRNA_L-elsbetiae_contig15610.3931.1 vs. uniprot
Match: A0A7S2RXJ3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RXJ3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.400e-13
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 1
Query:    1 MDHAVQRALGMGGHLDGPIKHPAHGAVASIRSPDGHMVGLFQPA 132
            MD  V +   +G HLDGPI++PAHG VA++R+PDGHM+GL++PA
Sbjct:   88 MDSTVAKCAQLGAHLDGPIQYPAHGKVAALRTPDGHMIGLYEPA 131          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15610.3931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGD4_ECTSI3.640e-2793.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTK2_9PHAE1.130e-2693.88VOC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A058ZFZ5_FONAL8.060e-1670.45VOC domain-containing protein n=1 Tax=Fonticula al... [more]
A0A7S2HIP9_9STRA1.830e-1465.91Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1YTJ1_9STRA2.260e-1461.36Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4V0W5_9STRA4.930e-1461.36Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2R5GWN9_9STRA8.660e-1465.12Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
B7G5E8_PHATC1.630e-1362.79Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S0BXZ2_9STRA2.030e-1363.64Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2RXJ3_9STRA2.400e-1359.09Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15610contigL-elsbetiae_contig15610:1082..1231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue3e-19
Seed eggNOG ortholog2880.D8LGD4
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2CF1K@1,2RZ76@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionGlyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Ec32 orthologEc-06_002530.1
Exons1
Model size150
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.6251626-CDS-L-elsbetiae_contig15610:1081..12311622815639.6251626-CDS-L-elsbetiae_contig15610:1081..1231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15610 1082..1231 +
1691683007.9009933-CDS-L-elsbetiae_contig15610:1081..12311691683007.9009933-CDS-L-elsbetiae_contig15610:1081..1231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15610 1082..1231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15610.3931.1prot_L-elsbetiae_contig15610.3931.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15610 1082..1231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15610.3931.1

>prot_L-elsbetiae_contig15610.3931.1 ID=prot_L-elsbetiae_contig15610.3931.1|Name=mRNA_L-elsbetiae_contig15610.3931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=50bp
MDHAVQRALGMGGHLDGPIKHPAHGAVASIRSPDGHMVGLFQPADQESL*
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mRNA from alignment at L-elsbetiae_contig15610:1082..1231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15610.3931.1 ID=mRNA_L-elsbetiae_contig15610.3931.1|Name=mRNA_L-elsbetiae_contig15610.3931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=150bp|location=Sequence derived from alignment at L-elsbetiae_contig15610:1082..1231+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCACGCAGTTCAGCGAGCGCTTGGAATGGGCGGGCACCTGGACGG CCCGATAAAGCACCCCGCCCACGGCGCGGTGGCGTCGATCCGGAGCCCCG ACGGTCACATGGTCGGCCTTTTTCAACCGGCTGACCAGGAAAGCTTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15610:1082..1231+

>mRNA_L-elsbetiae_contig15610.3931.1 ID=mRNA_L-elsbetiae_contig15610.3931.1|Name=mRNA_L-elsbetiae_contig15610.3931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig15610:1082..1231+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCACGCAGTTCAGCGAGCGCTTGGAATGGGCGGGCACCTGGACGG
CCCGATAAAGCACCCCGCCCACGGCGCGGTGGCGTCGATCCGGAGCCCCG
ACGGTCACATGGTCGGCCTTTTTCAACCGGCTGACCAGGAAAGCTTGTGA
ATGGACCACGCAGTTCAGCGAGCGCTTGGAATGGGCGGGCACCTGGACGG
CCCGATAAAGCACCCCGCCCACGGCGCGGTGGCGTCGATCCGGAGCCCCG
ACGGTCACATGGTCGGCCTTTTTCAACCGGCTGACCAGGAAAGCTTGTGA
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