mRNA_L-elsbetiae_contig1560.3928.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1560.3928.1
Unique NamemRNA_L-elsbetiae_contig1560.3928.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1560.3928.1 vs. uniprot
Match: D8LSZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ4_ECTSI)

HSP 1 Score: 407 bits (1045), Expect = 2.300e-134
Identity = 251/478 (52.51%), Postives = 283/478 (59.21%), Query Frame = 1 
Query:  199 RVRWRYSSVSLALLVVYAVCSLV-FLRPPSQYAVGPTTAPNNDKYNGNNGHDDHWGRQPRIRSASGADSIVFIALGPAARSTSLLYALTSLREEGRWDGAVHVIVEYEEDLDCLSSYLRQSVTAIAIAPPTSSGGRSGSGFEANNIGTTGPALGAMGKSTETVEGTGTARAEANAGDAAAVMESVSRVDAGGAIDTGNGDQLYLRDDGRSKPGGVVVNSAKMAKMQLLDLLPPSIERVVYVDCDVITQGPVGPFLDSVAQAWNELDREVEAAAAATVAADRGPATAERPTKSADRLPSRLQGESAAERSNSPAADSDDIGPAGDGSAKTSKPLSSPSSTVIIFEDAGGHTIPVCRGCDGAHSGVVALARGHSERCLELWHDAFQGDGGKVTGTATDQEALDVALRQGSGCEARWIGRRHLSFMKDAFVMAGLTRASTFGHFTGLLHPERLGTVYRRFYEWALGRGFEEWGQGEIEACA 1629
            R R R  SV+LALL+ YAV S V FLRPP  + VGP+T P+    +GN        +QPR+RSASGADSIVF+ALGPAARS SLLYALTSLREEG WDG VHV+VE E+DL CLSSYLRQSVTAIAIAP                                                             GG++ +G GD             GVV N AKMAKM+LLDLLPPS+ERVVYVDCDV+TQ P+GPFLD+VA+ W+ELDR+  A                                                                   TV+IF DAGGHT+PVCRGCD AHSGVVALARGHSERCL+LWHDAF+GDG    GT+TDQEALD AL +GSGCEA  +GR HLSFMKDAFVMAGLTR STFGH+TGLLHP+ LG VYRRFYEWALG  FEEWGQGEI+ CA
Sbjct:    3 RARRRCWSVALALLLTYAVVSTVLFLRPPL-HPVGPSTKPSTT-ISGNQ----RTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVVVEREDDLACLSSYLRQSVTAIAIAPXX------------------------------------------------------XXXXXGGSLHSGGGDTR-----------GVVQN-AKMAKMKLLDLLPPSVERVVYVDCDVVTQRPLGPFLDAVAREWDELDRK--AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVMIFADAGGHTVPVCRGCDRAHSGVVALARGHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRWHLSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMSFEEWGQGEIQGCA 406
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1560.3928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSZ4_ECTSI2.300e-13452.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1560contigL-elsbetiae_contig1560:16041..18209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score410.2
Seed ortholog evalue1.4e-111
Seed eggNOG ortholog2880.D8LSZ4
Hectar predicted targeting categorysignal anchor
EggNOG OGs2EYNU@1,2T04Z@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferases
Ec32 orthologEc-26_001980.1
Exons2
Model size1766
Cds size1542
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1560.3928.1prot_L-elsbetiae_contig1560.3928.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1560 16166..17707 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.3699408-UTR-L-elsbetiae_contig1560:16040..161651622815639.3699408-UTR-L-elsbetiae_contig1560:16040..16165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1560 16041..16165 -
1691683007.7368839-UTR-L-elsbetiae_contig1560:16040..161651691683007.7368839-UTR-L-elsbetiae_contig1560:16040..16165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1560 16041..16165 -
1622815639.3916564-UTR-L-elsbetiae_contig1560:17707..177121622815639.3916564-UTR-L-elsbetiae_contig1560:17707..17712Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1560 17708..17712 -
1691683007.7556562-UTR-L-elsbetiae_contig1560:17707..177121691683007.7556562-UTR-L-elsbetiae_contig1560:17707..17712Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1560 17708..17712 -
1622815639.404514-UTR-L-elsbetiae_contig1560:18115..182091622815639.404514-UTR-L-elsbetiae_contig1560:18115..18209Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1560 18116..18209 -
1691683007.7633328-UTR-L-elsbetiae_contig1560:18115..182091691683007.7633328-UTR-L-elsbetiae_contig1560:18115..18209Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1560 18116..18209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.3805146-CDS-L-elsbetiae_contig1560:16165..177071622815639.3805146-CDS-L-elsbetiae_contig1560:16165..17707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1560 16166..17707 -
1691683007.74801-CDS-L-elsbetiae_contig1560:16165..177071691683007.74801-CDS-L-elsbetiae_contig1560:16165..17707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1560 16166..17707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1560.3928.1

>prot_L-elsbetiae_contig1560.3928.1 ID=prot_L-elsbetiae_contig1560.3928.1|Name=mRNA_L-elsbetiae_contig1560.3928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=514bp
MYKQQFSHKYNCRTDRSSLRKLSCTPNKTSRQMRVRWRYSSVSLALLVVY
AVCSLVFLRPPSQYAVGPTTAPNNDKYNGNNGHDDHWGRQPRIRSASGAD
SIVFIALGPAARSTSLLYALTSLREEGRWDGAVHVIVEYEEDLDCLSSYL
RQSVTAIAIAPPTSSGGRSGSGFEANNIGTTGPALGAMGKSTETVEGTGT
ARAEANAGDAAAVMESVSRVDAGGAIDTGNGDQLYLRDDGRSKPGGVVVN
SAKMAKMQLLDLLPPSIERVVYVDCDVITQGPVGPFLDSVAQAWNELDRE
VEAAAAATVAADRGPATAERPTKSADRLPSRLQGESAAERSNSPAADSDD
IGPAGDGSAKTSKPLSSPSSTVIIFEDAGGHTIPVCRGCDGAHSGVVALA
RGHSERCLELWHDAFQGDGGKVTGTATDQEALDVALRQGSGCEARWIGRR
HLSFMKDAFVMAGLTRASTFGHFTGLLHPERLGTVYRRFYEWALGRGFEE
WGQGEIEACAAGL*
back to top

mRNA from alignment at L-elsbetiae_contig1560:16041..18209-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1560.3928.1 ID=mRNA_L-elsbetiae_contig1560.3928.1|Name=mRNA_L-elsbetiae_contig1560.3928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2169bp|location=Sequence derived from alignment at L-elsbetiae_contig1560:16041..18209- (Laminarionema elsbetiae ELsaHSoW15)
CTCGAAATTTCCCAGCGGCGATCGCCGATCTCCAGGCTCAGATACCCCGA
CATCAGCGTTCTCTCGCAACCCACTCTCAACCTTCGGAATATACGTGAGT
CCGGCAACGTAGAAAATATGCTTGTAGACTTCGGTCACCAGTGTCTGTCG
TGTTTGCAGCAGCTAGGAGAGGAAGAGGTCTAGAGAAGAATTTTTATAAT
TTTGCTGAGTGTGGTGTGAACGAGGCACACAGCTTGTATCTATGTACATA
CATACAATAAATAGGTTACGTGCCACATAATATATGTGTTCAACTGGCCA
GCTATAGTACACAAGGAAACAATTAGCAACGTATTTTGCGTACTGCAGTA
CACTGGCTTTACGAATATTCAAGTAATAAATTTTCCCACCCGCGGTTAGT
ATCTAACCTTCCTGGATATCTAGACTAGACTATATCATTCAAGGCCTGAA
CGTATCTAGATATATTTGTGAAATCCCGGTGCGTCGTTTCTTTGCAGATT
TTATGTACAAGCAGCAGTTCTCCCACAAGTACAACTGCAGAACGGACCGC
TCTTCCCTGCGGAAGCTTTCTTGTACACCAAACAAAACATCGCGTCAGAT
GCGAGTGAGATGGAGATACTCGTCCGTCTCGCTCGCCCTCTTGGTAGTCT
ACGCGGTTTGCAGCCTGGTCTTCTTGCGGCCCCCTTCCCAATACGCTGTC
GGGCCAACCACTGCACCAAACAATGACAAATACAACGGCAACAACGGCCA
TGACGATCACTGGGGCAGACAGCCGCGGATTCGGTCGGCATCTGGGGCCG
ACTCCATCGTCTTCATCGCCCTGGGCCCAGCGGCGCGCTCGACTTCGCTC
CTGTACGCCCTAACTTCGCTGAGGGAAGAGGGGAGGTGGGACGGAGCCGT
GCACGTGATAGTGGAGTACGAGGAGGACCTCGACTGCCTCTCATCCTACC
TTCGCCAGTCGGTCACGGCTATCGCTATCGCGCCACCGACTTCTAGTGGT
GGCAGAAGCGGCAGCGGCTTTGAAGCCAACAACATCGGCACTACCGGCCC
AGCGCTGGGCGCAATGGGGAAGAGCACCGAAACGGTAGAAGGAACAGGTA
CAGCCAGGGCAGAAGCAAATGCTGGGGACGCCGCGGCAGTGATGGAGAGT
GTGTCAAGAGTCGACGCCGGTGGCGCGATCGATACTGGCAACGGCGATCA
ACTTTATCTTCGTGACGACGGGCGCAGCAAACCTGGCGGGGTAGTGGTGA
ATAGCGCGAAGATGGCGAAGATGCAGCTTTTAGACCTGCTTCCTCCTAGC
ATTGAGCGTGTGGTGTACGTGGACTGCGACGTGATCACCCAAGGGCCGGT
GGGGCCTTTTCTCGACTCGGTCGCTCAGGCGTGGAACGAGCTGGACAGAG
AAGTGGAGGCGGCGGCGGCAGCAACCGTAGCAGCTGACAGAGGACCCGCC
ACAGCCGAGCGACCCACGAAGTCGGCGGATAGACTGCCTTCGCGCTTGCA
AGGAGAGAGCGCTGCCGAGAGGTCGAATTCTCCAGCGGCTGACAGCGACG
ATATCGGCCCTGCTGGTGATGGTAGCGCCAAGACAAGCAAGCCGTTGTCG
TCACCGTCATCAACGGTGATAATCTTTGAAGACGCCGGCGGTCACACAAT
CCCCGTGTGCCGGGGGTGCGACGGGGCGCACTCGGGGGTGGTGGCCCTGG
CGCGCGGCCACTCCGAGCGGTGCCTGGAGCTTTGGCACGACGCGTTCCAA
GGCGACGGCGGGAAAGTAACGGGCACGGCCACCGATCAAGAGGCCTTGGA
TGTCGCGCTACGCCAAGGGTCGGGCTGCGAGGCGCGCTGGATCGGCAGGC
GGCACCTGAGCTTCATGAAAGACGCGTTTGTCATGGCGGGGTTGACGAGG
GCGAGCACGTTCGGTCACTTTACGGGACTTTTGCATCCGGAAAGGTTGGG
AACGGTCTACCGGCGGTTCTATGAGTGGGCCTTGGGGCGAGGCTTTGAGG
AGTGGGGACAGGGCGAGATAGAAGCGTGCGCAGCTGGGTTGTGATTTTTG
TCGTGTGAGATGGCGGAGTTTATAATGTGCTCATCAGACGGTAGATGGTC
GCATACATGCGGGTGCAAGGGGGTGTGTACCCGTACTCACGTGTTCATTC
ATGCCATTAGATTTATGTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1560:16041..18209-

>mRNA_L-elsbetiae_contig1560.3928.1 ID=mRNA_L-elsbetiae_contig1560.3928.1|Name=mRNA_L-elsbetiae_contig1560.3928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3084bp|location=Sequence derived from alignment at L-elsbetiae_contig1560:16041..18209- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACAAGCAGCAGTTCTCCCACAAGTACAACTGCAGAACGGACCGCTC
TTCCCTGCGGAAGCTTTCTTGTACACCAAACAAAACATCGCGTCAGATGC
GAGTGAGATGGAGATACTCGTCCGTCTCGCTCGCCCTCTTGGTAGTCTAC
GCGGTTTGCAGCCTGGTCTTCTTGCGGCCCCCTTCCCAATACGCTGTCGG
GCCAACCACTGCACCAAACAATGACAAATACAACGGCAACAACGGCCATG
ACGATCACTGGGGCAGACAGCCGCGGATTCGGTCGGCATCTGGGGCCGAC
TCCATCGTCTTCATCGCCCTGGGCCCAGCGGCGCGCTCGACTTCGCTCCT
GTACGCCCTAACTTCGCTGAGGGAAGAGGGGAGGTGGGACGGAGCCGTGC
ACGTGATAGTGGAGTACGAGGAGGACCTCGACTGCCTCTCATCCTACCTT
CGCCAGTCGGTCACGGCTATCGCTATCGCGCCACCGACTTCTAGTGGTGG
CAGAAGCGGCAGCGGCTTTGAAGCCAACAACATCGGCACTACCGGCCCAG
CGCTGGGCGCAATGGGGAAGAGCACCGAAACGGTAGAAGGAACAGGTACA
GCCAGGGCAGAAGCAAATGCTGGGGACGCCGCGGCAGTGATGGAGAGTGT
GTCAAGAGTCGACGCCGGTGGCGCGATCGATACTGGCAACGGCGATCAAC
TTTATCTTCGTGACGACGGGCGCAGCAAACCTGGCGGGGTAGTGGTGAAT
AGCGCGAAGATGGCGAAGATGCAGCTTTTAGACCTGCTTCCTCCTAGCAT
TGAGCGTGTGGTGTACGTGGACTGCGACGTGATCACCCAAGGGCCGGTGG
GGCCTTTTCTCGACTCGGTCGCTCAGGCGTGGAACGAGCTGGACAGAGAA
GTGGAGGCGGCGGCGGCAGCAACCGTAGCAGCTGACAGAGGACCCGCCAC
AGCCGAGCGACCCACGAAGTCGGCGGATAGACTGCCTTCGCGCTTGCAAG
GAGAGAGCGCTGCCGAGAGGTCGAATTCTCCAGCGGCTGACAGCGACGAT
ATCGGCCCTGCTGGTGATGGTAGCGCCAAGACAAGCAAGCCGTTGTCGTC
ACCGTCATCAACGGTGATAATCTTTGAAGACGCCGGCGGTCACACAATCC
CCGTGTGCCGGGGGTGCGACGGGGCGCACTCGGGGGTGGTGGCCCTGGCG
CGCGGCCACTCCGAGCGGTGCCTGGAGCTTTGGCACGACGCGTTCCAAGG
CGACGGCGGGAAAGTAACGGGCACGGCCACCGATCAAGAGGCCTTGGATG
TCGCGCTACGCCAAGGGTCGGGCTGCGAGGCGCGCTGGATCGGCAGGCGG
CACCTGAGCTTCATGAAAGACGCGTTTGTCATGGCGGGGTTGACGAGGGC
GAGCACGTTCGGTCACTTTACGGGACTTTTGCATCCGGAAAGGTTGGGAA
CGGTCTACCGGCGGTTCTATGAGTGGGCCTTGGGGCGAGGCTTTGAGGAG
TGGGGACAGGGCGAGATAGAAGCGTGCGCAGCTGGGTTGTGAATGTACAA
GCAGCAGTTCTCCCACAAGTACAACTGCAGAACGGACCGCTCTTCCCTGC
GGAAGCTTTCTTGTACACCAAACAAAACATCGCGTCAGATGCGAGTGAGA
TGGAGATACTCGTCCGTCTCGCTCGCCCTCTTGGTAGTCTACGCGGTTTG
CAGCCTGGTCTTCTTGCGGCCCCCTTCCCAATACGCTGTCGGGCCAACCA
CTGCACCAAACAATGACAAATACAACGGCAACAACGGCCATGACGATCAC
TGGGGCAGACAGCCGCGGATTCGGTCGGCATCTGGGGCCGACTCCATCGT
CTTCATCGCCCTGGGCCCAGCGGCGCGCTCGACTTCGCTCCTGTACGCCC
TAACTTCGCTGAGGGAAGAGGGGAGGTGGGACGGAGCCGTGCACGTGATA
GTGGAGTACGAGGAGGACCTCGACTGCCTCTCATCCTACCTTCGCCAGTC
GGTCACGGCTATCGCTATCGCGCCACCGACTTCTAGTGGTGGCAGAAGCG
GCAGCGGCTTTGAAGCCAACAACATCGGCACTACCGGCCCAGCGCTGGGC
GCAATGGGGAAGAGCACCGAAACGGTAGAAGGAACAGGTACAGCCAGGGC
AGAAGCAAATGCTGGGGACGCCGCGGCAGTGATGGAGAGTGTGTCAAGAG
TCGACGCCGGTGGCGCGATCGATACTGGCAACGGCGATCAACTTTATCTT
CGTGACGACGGGCGCAGCAAACCTGGCGGGGTAGTGGTGAATAGCGCGAA
GATGGCGAAGATGCAGCTTTTAGACCTGCTTCCTCCTAGCATTGAGCGTG
TGGTGTACGTGGACTGCGACGTGATCACCCAAGGGCCGGTGGGGCCTTTT
CTCGACTCGGTCGCTCAGGCGTGGAACGAGCTGGACAGAGAAGTGGAGGC
GGCGGCGGCAGCAACCGTAGCAGCTGACAGAGGACCCGCCACAGCCGAGC
GACCCACGAAGTCGGCGGATAGACTGCCTTCGCGCTTGCAAGGAGAGAGC
GCTGCCGAGAGGTCGAATTCTCCAGCGGCTGACAGCGACGATATCGGCCC
TGCTGGTGATGGTAGCGCCAAGACAAGCAAGCCGTTGTCGTCACCGTCAT
CAACGGTGATAATCTTTGAAGACGCCGGCGGTCACACAATCCCCGTGTGC
CGGGGGTGCGACGGGGCGCACTCGGGGGTGGTGGCCCTGGCGCGCGGCCA
CTCCGAGCGGTGCCTGGAGCTTTGGCACGACGCGTTCCAAGGCGACGGCG
GGAAAGTAACGGGCACGGCCACCGATCAAGAGGCCTTGGATGTCGCGCTA
CGCCAAGGGTCGGGCTGCGAGGCGCGCTGGATCGGCAGGCGGCACCTGAG
CTTCATGAAAGACGCGTTTGTCATGGCGGGGTTGACGAGGGCGAGCACGT
TCGGTCACTTTACGGGACTTTTGCATCCGGAAAGGTTGGGAACGGTCTAC
CGGCGGTTCTATGAGTGGGCCTTGGGGCGAGGCTTTGAGGAGTGGGGACA
GGGCGAGATAGAAGCGTGCGCAGCTGGGTTGTGA
back to top