mRNA_L-elsbetiae_contig156.3922.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig156.3922.1 vs. uniprot
Match: A0A6H5KZ06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ06_9PHAE) HSP 1 Score: 123 bits (309), Expect = 6.710e-26 Identity = 228/682 (33.43%), Postives = 287/682 (42.08%), Query Frame = 1 Query: 1 GFDFMEDRPLHARGGGGGGRRPIESGVG---RGGKPSAPVRLGVHGKQRVASLFDLLQELSVPPKPRSSLHSGARDPGAP-GALPSPAVSSSASKRRFCPEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVWSSPTLRKVRHGHIQQGVSPAEPT--------RRVTFVGESEEARRLEDGVIPSDALRGRDHPRRVSYLPGAR--GSXXXXXXXXXXXXXXXXXXXXXXXXXXNAGKSRTHPNAEASPSRDAATKTAAAEVGSAPTTQPKDVPGERP------ARRRRVD----GGERPSSGSDAR---GGVESARGVDGPWSAPSGGRESDRGRDTNTGGNVAGSSFSWRGSPGSRGGXXXXXXXXXXXXXXGWISAPST--KQQVEGSHDGRTMDQVDKGSRNRRR----MPQETDGALLWMTQGPGPTKIGDHQDGGGQWPSLTTPDGSSNGGGRGRSSSARVGTVDGSSGDERREAHASRRYGECT------------------------RG---RRGRREESGEARGSPHRPAASAEASPPGRAAGEEAERAAEAEVSDNDDDGTSSG--------DEGYTCYD------GGDQDCKRGTGEASEKVQEKELLGVRGLCRMKGVLLAMVDWSTAD----GGTERTIMPTSELKAEWPRQYIAYLEGKVVFAAE 1812 GFDFMEDRPLH +G GGG + GVG G AP R H +QRV SLFDLLQELSVPPK S H GAR GAP G S SS ++ R C +G XXXXXXXXXXXXXXXXX +R G + P R+ DG +P + HPR + P R G A + ++ + S SRD + AA +A + P + PG R R RRVD GG R SG+ R GG SARG G P R+ N V+G+ WR + +RGG W S P+T ++Q G G T +QVD RN +PQ+ + WM+QG PT G DG +WPS +T S GGGRG + A + +E + + RG RRG R S P+A + SP G+ A+RAAE + D GT G DEG T + GG QD +R + +K+LL VRGLCRM+G +LA+V+WS D TE + + +S LKAEWPRQYI YLE K+VF E Sbjct: 2 GFDFMEDRPLHQKGAQGGGSSTV--GVGDPHHSGIRPAPGRPIAHSEQRVTSLFDLLQELSVPPKSGGSSH-GARPAGAPRGTTASSLASSLSTNRVVCSKGSSSLDITGGNQQXXXXXXXXXXXXXXXXXXXXXXGAGVRDDAAGGVALEARPRAVAGSXXXXXXXXXXXXXXXXXXRQGWDGSMP---VSNDSHPR-LPQRPVLRQEGQNDRTPIGASSANEARRVTFAVDKEAGQARRLQSGRGSGDSSSRDCDQRAVAA-AQAALSVSPVNRPGARQREVELSTRLRRVDDAGGGGGREDSGTGCRRAAGG--SARGAAGRQRGPPLSV-----RENNAA--VSGAGPLWRAAFPARGGGGGAGEGPRGTTGE-WGSKPTTGGRRQGNGGTGGGTSEQVDDRVRNSSERWTTLPQDGGDEVQWMSQGGDPTTAG--VDGSRRWPSASTNLDSFRGGGRG-GTGANTKXXXXXAEEEGNDVGSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGQIARRGTRAPS---------PSAGEDMSPGRARGGKRAKRAAEGRDEGDRDGGTDDGQGLFEGSSDEGCTYFGNDDPAAGGAQDDRRHKDNDPKGAPQKKLLRVRGLCRMQGSVLALVEWSMVDVDGAASTELSFVLSSTLKAEWPRQYIDYLEAKMVFEEE 653
BLAST of mRNA_L-elsbetiae_contig156.3922.1 vs. uniprot
Match: D7FZK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK8_ECTSI) HSP 1 Score: 114 bits (284), Expect = 8.740e-23 Identity = 248/679 (36.52%), Postives = 306/679 (45.07%), Query Frame = 1 Query: 1 GFDFMEDRPLHARGGGGGGRRPI-------ESGVGRG-----GKPSAPVRLGVHGKQRVASLFDLLQELSVPPKPRSSLHSGARDPGAP-GALPSPAVSSSASKRRFCPEG----EXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVWSSPTLRKVRHGHIQQGVSPAEPTRRVTFV--GESEEARRLEDGVIPSDALRGRDHPRRVSY-------------LPGARGSXXXXXXXXXXXXXXXXXXXXXXXXXXNAGKSRTH---PNAEASPSRDAATKTAAAEVGSAPTTQPKDVPGERPARRRRVDGGER-----------PSSGSDARGGVESARGVDGPWSAPSGGRESDRGRDTNTGGNVAGSSFSWRGSPGSRGGXXXXXXXXXXXXXXGWISAPSTKQQVEGSHDGRTMDQVDKGSRNRRR----MPQETDGALLWMTQGPGPTKIGDHQDGGGQWPSLTTPDGSSNGGGRGRSSSARVGTVDGSSGDERREAHASRRYGECT-----RGRRGRREESGEARGSPHRPAASAEASPPGRAAG-EEAERAAEAEVSDND-----DDGTS----SGDEGYTCYD------GGDQDCKRGTGEASEKVQEKELLGVRGLCRMKGVLLAMVDWSTAD----GGTERTIMPTSELKAEWPRQYIAYLEGKVVFAAE 1812 GFDFMEDRPLH +G GG S VG G G AP R H +QRVASLFDLLQELSVPPK S GA+ GAP G SP S ++K+ C +G + XXXXXXXXXXXXXXXXXXXXXXX G R+ + G S + RRVTF E+E+AR + G D+ RD +R +P +R + XXXXXXXXXXXXXXX A + PN+ A R A AAA+ A P + PG AR+R V+ R SARG G P G R+ N V+G+ WR + +RGG X G ++Q +G G T +QVD +RN +PQ+ + WM+QG PT G DG +WPS +T S GGGRG RG+ RR R P+A + SP GRA G + A+R E D D DDG SGDEG T ++ GG QD R + +KELL VRGLCRM+G +LA+V+WS D TE + + +S LKAEWPRQYI YLE K+VF E Sbjct: 2 GFDFMEDRPLHQKGAQGGDXXXXXXXXXXXSSTVGVGDPHHSGIRPAPGRPSAHSEQRVASLFDLLQELSVPPKSGGS-SLGAQAAGAPRGTTASPLASPLSTKKAVCSKGGSSLDITGGNXXXXXXXXXXXXXXXXXXXXXXXDGAGRPVLRREGQQDRNWIGASSTDEVRRVTFAVDEEAEQARSRQSGRGSGDSS-SRDCDQRAXXXXXXXXXXITGPTIPSSRSANARPGNDXXXXXXXXXXXXXXXRLANAAATAHVSGATPNSNALGRRVALPAVAAAQA--ALPVSPVNRPG---ARQREVELSTRRXXXXXXXXXXXXXXXXXXXXXXSARGAAGRQRGPPLGV-----RENNAA--VSGAGPLWREAFPARGGGGXGDE--------GPRGTTGERRQGKGGTRGGTSEQVDDRARNSSERWTTLPQDGGDEVQWMSQGGDPTTAG--VDGSRRWPSASTNLDSFRGGGRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGQIARR------RAREPSPSAGEDVSP-GRARGAKRAKRTVEGR-DDGDRGGGTDDGQGLFEGSGDEGCTYFEYEDPATGGAQDDGRPEDNGPKGGPQKELLRVRGLCRMQGSVLALVEWSVVDVDGAASTELSFVLSSTLKAEWPRQYIDYLEAKMVFEEE 648 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig156.3922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig156.3922.1 >prot_L-elsbetiae_contig156.3922.1 ID=prot_L-elsbetiae_contig156.3922.1|Name=mRNA_L-elsbetiae_contig156.3922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=600bp MEDRPLHARGGGGGGRRPIESGVGRGGKPSAPVRLGVHGKQRVASLFDLLback to top mRNA from alignment at L-elsbetiae_contig156:7700..11987+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig156.3922.1 ID=mRNA_L-elsbetiae_contig156.3922.1|Name=mRNA_L-elsbetiae_contig156.3922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4288bp|location=Sequence derived from alignment at L-elsbetiae_contig156:7700..11987+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig156:7700..11987+ >mRNA_L-elsbetiae_contig156.3922.1 ID=mRNA_L-elsbetiae_contig156.3922.1|Name=mRNA_L-elsbetiae_contig156.3922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3600bp|location=Sequence derived from alignment at L-elsbetiae_contig156:7700..11987+ (Laminarionema elsbetiae ELsaHSoW15)back to top |