mRNA_L-elsbetiae_contig156.3921.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig156.3921.1
Unique NamemRNA_L-elsbetiae_contig156.3921.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig156.3921.1 vs. uniprot
Match: D7FZK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK7_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.180e-40
Identity = 150/203 (73.89%), Postives = 155/203 (76.35%), Query Frame = 1 
Query:    1 MALSLVGDYAGSSSEESAXXXXXXXXXXXPTKPQISLPSAADLFDSVDTSSASFMSAPVASE-DVPLTTPKRKKTGAXXXXXXXXXXXXXXXXKHSKGEAAAAPNKGLIPPQMSRPNIVTEDSALWSSDASMKRQRXXXXXXXXXXXXXXXXXXXXXXGEKGKDSLSFRQREKASAKRDKGQASRGKSYVEEEKRLLRELGSS 606
            MALSLVGDY GS      XXXXXXXXXXX        PSAADLFDSVDTSSASF+SAP  S  D PLTTPKRKKT  XXXXXXX         K SKG A +A NKGL+PPQMSRPNIVTEDSALWSSDAS K   XXXXXXXXXXXXXXXXXXXXXX       L+F+QREKA  KRDKGQASRGKSYVEEEKRLLRELGSS
Sbjct:    1 MALSLVGDYGGSXXXXXXXXXXXXXXXXXXXXXXX-XPSAADLFDSVDTSSASFLSAPATSATDAPLTTPKRKKTDGXXXXXXXS--------KDSKGGAGSA-NKGLVPPQMSRPNIVTEDSALWSSDASRKXXXXXXXXXXXXXXXXXXXXXXXXXXXA--KELTFKQREKA--KRDKGQASRGKSYVEEEKRLLRELGSS 189
[Close]
BLAST of mRNA_L-elsbetiae_contig156.3921.1 vs. uniprot
Match: A0A7S2R5U2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5U2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.250e-11
Identity = 59/166 (35.54%), Postives = 80/166 (48.19%), Query Frame = 1 
Query:  109 LPSAADLFDSVDTSSASFMSAPVASEDVPLTTPKRKKTGAXXXXXXXXXXXXXXXXKHSKGEAAAAPNKGLIPPQMS-RPNIVTEDSALWSSDASMKRQRXXXXXXXXXXXXXXXXXXXXXXGEKGKDSLSFRQREKASAKRDKGQASRGKSYVEEEKRLLRELGS 603
            LPSAA+LF SV  +S   +++P  + ++P    K++KT                    S  +     +  L+PPQ+S RPNI TED + WS+  S    +                       +K K+ LSF QREK   KRD G  SRGKS+VEEEKRLLR+  S
Sbjct:   44 LPSAAELFSSVGEASFLSVASPTPAPEIPPIQAKKRKTATASDVGGG-----------SGDKPRRTKSSHLVPPQLSSRPNIATEDVSQWSTSKSSAALK-----------------------KKDKEKLSFNQREKR--KRDNGMQSRGKSFVEEEKRLLRQAES 173
[Close]
BLAST of mRNA_L-elsbetiae_contig156.3921.1 vs. uniprot
Match: A0A7S2HPJ6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPJ6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.860e-9
Identity = 56/169 (33.14%), Postives = 80/169 (47.34%), Query Frame = 1 
Query:  103 ISLPSAADLFDSVDTSSASFMSAPVASEDVPLTTPKRKKTGAXXXXXXXXXXXXXXXXKHSKGEAAAAPNK---GLIPPQMSRPNIVTEDSALWSSDASMKRQRXXXXXXXXXXXXXXXXXXXXXXGEKGKDSLSFRQREKASAKRDKGQASRGKSYVEEEKRLLRELG 600
            ++LPSA++LF SV+ +S    ++PV + +V    PK+KK                   K++     A+  K    L+PPQ++RPN+ TED   WS+  S                            +  KD+ SF  REK   KRD G  SR K++VEEEKRLLR+ G
Sbjct:   44 VALPSASELFSSVEGASFLTAASPVPTPEVAPLQPKKKKK------------------KNTDAFQPASRRKMREQLLPPQLARPNLSTEDYRQWSTTKSADAHNDSKKKD-----------------KSSKDAKSFNSREKR--KRDLGMQSRHKNFVEEEKRLLRQAG 175
[Close]
BLAST of mRNA_L-elsbetiae_contig156.3921.1 vs. uniprot
Match: A0A6V3BDJ3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BDJ3_HETAK)

HSP 1 Score: 55.5 bits (132), Expect = 2.290e-5
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:  319 LIPPQMS--RPNIVTEDSALWSSDASMKRQRXXXXXXXXXXXXXXXXXXXXXXGEKGKDSLSFRQREKASAKRDKGQASRGKSYVEEEKRLLREL 597
            L+PPQM   RPN VTE + LW+ +    +Q+                       +K K   SFR +EK   KRD+GQASRGK+YVEEEKR+LR++
Sbjct:  138 LVPPQMQLKRPNHVTEATELWTKNKQGSKQQ-----------------------DKNK---SFRHKEKL--KRDRGQASRGKNYVEEEKRILRQM 204
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig156.3921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FZK7_ECTSI1.180e-4073.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2R5U2_9STRA1.250e-1135.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2HPJ6_9STRA6.860e-933.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6V3BDJ3_HETAK2.290e-542.11Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig156contigL-elsbetiae_contig156:4906..6992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_010070.1
Exons3
Model size1088
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig156.3921.1prot_L-elsbetiae_contig156.3921.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig156 5385..6992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.424244-UTR-L-elsbetiae_contig156:4905..53841622815638.424244-UTR-L-elsbetiae_contig156:4905..5384Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig156 4906..5384 -
1691683007.0237014-UTR-L-elsbetiae_contig156:4905..53841691683007.0237014-UTR-L-elsbetiae_contig156:4905..5384Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig156 4906..5384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.4350998-CDS-L-elsbetiae_contig156:5384..54711622815638.4350998-CDS-L-elsbetiae_contig156:5384..5471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig156 5385..5471 -
1691683007.0339475-CDS-L-elsbetiae_contig156:5384..54711691683007.0339475-CDS-L-elsbetiae_contig156:5384..5471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig156 5385..5471 -
1622815638.44515-CDS-L-elsbetiae_contig156:5854..62741622815638.44515-CDS-L-elsbetiae_contig156:5854..6274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig156 5855..6274 -
1691683007.0432787-CDS-L-elsbetiae_contig156:5854..62741691683007.0432787-CDS-L-elsbetiae_contig156:5854..6274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig156 5855..6274 -
1622815638.4572277-CDS-L-elsbetiae_contig156:6890..69921622815638.4572277-CDS-L-elsbetiae_contig156:6890..6992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig156 6891..6992 -
1691683007.0553918-CDS-L-elsbetiae_contig156:6890..69921691683007.0553918-CDS-L-elsbetiae_contig156:6890..6992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig156 6891..6992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig156.3921.1

>prot_L-elsbetiae_contig156.3921.1 ID=prot_L-elsbetiae_contig156.3921.1|Name=mRNA_L-elsbetiae_contig156.3921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
MALSLVGDYAGSSSEESAEESESEEEQTKPTKPQISLPSAADLFDSVDTS
SASFMSAPVASEDVPLTTPKRKKTGASGSSSTTTSSTSTKKSKHSKGEAA
AAPNKGLIPPQMSRPNIVTEDSALWSSDASMKRQRQGEAERRGAAAAAAA
AGGTGAGGEKGKDSLSFRQREKASAKRDKGQASRGKSYVEEEKRLLRELG
SS*
back to top

mRNA from alignment at L-elsbetiae_contig156:4906..6992-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig156.3921.1 ID=mRNA_L-elsbetiae_contig156.3921.1|Name=mRNA_L-elsbetiae_contig156.3921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2087bp|location=Sequence derived from alignment at L-elsbetiae_contig156:4906..6992- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCTATCACTGGTGGGAGACTATGCCGGTTCCTCTTCGGAGGAGTC
TGCGGAAGAGTCAGAGTCGGAAGAGGAGCAAACGAAACCGACGAAACCTC
AGGTACAAATGTACAAGTGAATCTCTACAATGCACCCCTCGTCTGTGTAG
TTCGAACACCCTCGGAGATCTACATCGCACGCTGCCCATCTCGTGTCGCC
TCTTTGATCTCCTTTTCCTCGTATCCGATTGTTGGACGAGTACCCTATAA
GACAGGTAGAAATTATCCTATGCTACATACCCTGCCCGAGCACTGCTGTG
TCGGTACGCCCCGAGTGGGGTAGTCTACAGGCAGTGTATCTTAGATATGT
ACGTAGTCGAGGAGCAGTTACAGCAGCGGGACTACGCACGATCTCTCACA
ACAATAGCGGAGCGTAATGCTGGCTGCTGTTTTTAGTATTTACCTGTTTG
GTACGTGTTTGTATCTACCTTTTGTGAGTTTTTGTTTATTTTTCGAAAGC
CTGGTTTCCCGTCGGTGCCTGACGACCAGCCTCAATGTACCTCCTCGGAG
GCGACCCGGCAGAGGTAGAAAATACTACAACAGTTGATGCGTGTGTGTAC
GTGTGTACATATGTATGCGGTGAACATACAGATATACTGCCGCAAATACA
TGGCAGTTTTCGATCGCGTGCGACAATATCACTCCCCCTGTTGCCTCCGC
CGATGAACCAAAATAAAGATCTCCCTGCCTTCAGCCGCGGATCTCTTCGA
CTCCGTCGACACGAGCTCCGCATCCTTCATGTCCGCCCCGGTGGCGTCAG
AGGACGTCCCGCTCACAACACCCAAACGAAAGAAGACGGGCGCAAGCGGT
AGCAGCAGTACCACCACCAGCAGCACCAGCACGAAAAAGAGTAAACACTC
GAAAGGAGAAGCAGCAGCAGCCCCCAACAAGGGCTTGATTCCGCCGCAGA
TGTCGCGACCGAATATTGTTACCGAGGATTCCGCCTTATGGTCGTCGGAC
GCGTCGATGAAACGGCAACGTCAGGGCGAGGCGGAGAGGAGAGGCGCCGC
TGCGGCAGCAGCGGCGGCGGGCGGAACAGGAGCAGGTGGCGAGAAGGGAA
AGGACTCGCTGTCGTTCAGGCAGAGGGAAAAGGCGAGTGTGTTTGTGCGT
AAATAAATACGGTGGTGTCTTCTTAAACAACCCCGCCGCATCACGCCGTC
GGTCAGAGTTGGCAGCAGTACAGCTGCTCGCACATGAGGGGCATGGAACA
CAGTGGTGCTGGCACCGGATCGCATCAGCCTGTCTCCTGTCGGTACCTCA
ATACACGGAACTCCGGCACTCGTTACTGGCCGTAAATATCGTGTGAATGT
ATGTAAAGAGCCAGGACATTATTCTGTTGCGAAAGTGAAGTGAAAGCCTG
CACGGGAGTTTCTCTTCAGCGAAACCAGATTCGTACCGTAGAATCACTCC
TGGAAATACACAAGCCCGCTCCCGAGCCGACTAACCCTGGCGTGCTTTGT
TTTCGGTTCACGAATCGCCAGGCAAAACGAGATAAAGGGCAGGCCTCGAG
AGGCAAGAGCTACGTGGAAGAGGAGAAGCGGCTGCTGAGAGAACTCGGCT
CGTCCTAGCAGCATCCGCGCGGTTGTCGCACCTCCTTCTGTACCTAGGCT
TGCCATATACCTGGTACTTCTGTATCAATGGAAGGACGAATTGAGAGTAT
TTTCTGTGTTGTAACACTCGATCAGCCAGGTCCCCCTGGCGTACTCGTCC
CGTGCACGGTTTTTTTTTATTTTTTTTGTTTCTCAAATATCAGTGGATCT
CTGCCCGAACGAATCTGCGACATCGCTCATGAGTCGCGCGTCGTGGCTAA
CTTAAGGCTGCACCACGCAGCACAGCTTTGAAATCCCGGGTAGGGATTCC
AGGAGAGAGAGCCCGAAGCGACACATGCTGTTTTTGTATGTAGCGGTTCT
GTTTTGCCATCTCCAACAGAAAATGCCGCAGATATCTCTCCAGCTGCCCT
TTCTCACCGCAAAATCGACTTTTGCGCTTCGAAACAAGAACCGATACCAA
AATTCCTCAGTCAATCCTTGGAGTTGGCTATCTTCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig156:4906..6992-

>mRNA_L-elsbetiae_contig156.3921.1 ID=mRNA_L-elsbetiae_contig156.3921.1|Name=mRNA_L-elsbetiae_contig156.3921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig156:4906..6992- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCTATCACTGGTGGGAGACTATGCCGGTTCCTCTTCGGAGGAGTC
TGCGGAAGAGTCAGAGTCGGAAGAGGAGCAAACGAAACCGACGAAACCTC
AGATGGCTCTATCACTGGTGGGAGACTATGCCGGTTCCTCTTCGGAGGAG
TCTGCGGAAGAGTCAGAGTCGGAAGAGGAGCAAACGAAACCGACGAAACC
TCAGATCTCCCTGCCTTCAGCCGCGGATCTCTTCGACTCCGTCGACACGA
GCTCCGCATCCTTCATGTCCGCCCCGGTGGCGTCAGAGGACGTCCCGCTC
ACAACACCCAAACGAAAGAAGACGGGCGCAAGCGGTAGCAGCAGTACCAC
CACCAGCAGCACCAGCACGAAAAAGAGTAAACACTCGAAAGGAGAAGCAG
CAGCAGCCCCCAACAAGGGCTTGATTCCGCCGCAGATGTCGCGACCGAAT
ATTGTTACCGAGGATTCCGCCTTATGGTCGTCGGACGCGTCGATGAAACG
GCAACGTCAGGGCGAGGCGGAGAGGAGAGGCGCCGCTGCGGCAGCAGCGG
CGGCGGGCGGAACAGGAGCAGGTGGCGAGAAGGGAAAGGACTCGCTGTCG
TTCAGGCAGAGGGAAAAGGCGAGTATCTCCCTGCCTTCAGCCGCGGATCT
CTTCGACTCCGTCGACACGAGCTCCGCATCCTTCATGTCCGCCCCGGTGG
CGTCAGAGGACGTCCCGCTCACAACACCCAAACGAAAGAAGACGGGCGCA
AGCGGTAGCAGCAGTACCACCACCAGCAGCACCAGCACGAAAAAGAGTAA
ACACTCGAAAGGAGAAGCAGCAGCAGCCCCCAACAAGGGCTTGATTCCGC
CGCAGATGTCGCGACCGAATATTGTTACCGAGGATTCCGCCTTATGGTCG
TCGGACGCGTCGATGAAACGGCAACGTCAGGGCGAGGCGGAGAGGAGAGG
CGCCGCTGCGGCAGCAGCGGCGGCGGGCGGAACAGGAGCAGGTGGCGAGA
AGGGAAAGGACTCGCTGTCGTTCAGGCAGAGGGAAAAGGCGAGTGCAAAA
CGAGATAAAGGGCAGGCCTCGAGAGGCAAGAGCTACGTGGAAGAGGAGAA
GCGGCTGCTGAGAGAACTCGGCTCGTCCTAGGCAAAACGAGATAAAGGGC
AGGCCTCGAGAGGCAAGAGCTACGTGGAAGAGGAGAAGCGGCTGCTGAGA
GAACTCGGCTCGTCCTAG
back to top