mRNA_L-elsbetiae_contig1037.392.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1037.392.1
Unique NamemRNA_L-elsbetiae_contig1037.392.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1037.392.1 vs. uniprot
Match: D7FJI6_ECTSI (MORN repeat variant family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJI6_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 4.780e-82
Identity = 137/161 (85.09%), Postives = 145/161 (90.06%), Query Frame = 1 
Query:  385 GGVGPFAFPPEAPMFVLPLAGLSAARCFPKYQNAMSSGALVPYDSLDRNNAFVVFVSHRWVNESSRPTGFRQHAAAGGDGDGTPDVDSAKHAFLVEGLSSILASLPREVAVFLWIDFSCIDQDNEESKRKGARSLAAYMQLSDAVFTPYAEILYPSSGGEG 867
            GGVGPFAFPPEAPMFVLPL GLSAAR FPKYQNAM SGALVPYDSLDRN+AFVVFVSHRW+NESSRPT F +H      G+G+PDVDSAKH FLVEGL SILASLPREVAVFLWID+SCIDQ+N ESKRKGARS+AAYMQLSDAVFTPYAE LYPSSGG G
Sbjct:  106 GGVGPFAFPPEAPMFVLPLTGLSAARSFPKYQNAMRSGALVPYDSLDRNSAFVVFVSHRWINESSRPTEFWKHGGGQDFGEGSPDVDSAKHTFLVEGLHSILASLPREVAVFLWIDYSCIDQENPESKRKGARSVAAYMQLSDAVFTPYAESLYPSSGGGG 266
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1037.392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJI6_ECTSI4.780e-8285.09MORN repeat variant family protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1037contigL-elsbetiae_contig1037:11754..12980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.5
Seed ortholog evalue3.7e-72
Seed eggNOG ortholog2880.D7FJI6
KEGG koko:K03283,ko:K20178
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04138,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04138,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG4642@1,KOG0231@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-04_006260.1
Exons2
Model size891
Cds size891
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815263.5985599-CDS-L-elsbetiae_contig1037:11753..118941622815263.5985599-CDS-L-elsbetiae_contig1037:11753..11894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1037 11754..11894 -
1691682804.469766-CDS-L-elsbetiae_contig1037:11753..118941691682804.469766-CDS-L-elsbetiae_contig1037:11753..11894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1037 11754..11894 -
1622815263.6517367-CDS-L-elsbetiae_contig1037:12230..129801622815263.6517367-CDS-L-elsbetiae_contig1037:12230..12980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1037 12231..12980 -
1691682804.4797297-CDS-L-elsbetiae_contig1037:12230..129801691682804.4797297-CDS-L-elsbetiae_contig1037:12230..12980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1037 12231..12980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1037.392.1prot_L-elsbetiae_contig1037.392.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1037 11754..12980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1037.392.1

>prot_L-elsbetiae_contig1037.392.1 ID=prot_L-elsbetiae_contig1037.392.1|Name=mRNA_L-elsbetiae_contig1037.392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=297bp
RRNERAKAKSGEGTFSLPPSPSGSIEDATGEKNSAAASSQLAEALAEAPV
ATVHIVSSREGEGTPSATRGRGVGMPPVMGAKSAGALSQPSPSTPRTEES
SPSTASLAPVPVVQTPIRSSSWLSSARRGGVGPFAFPPEAPMFVLPLAGL
SAARCFPKYQNAMSSGALVPYDSLDRNNAFVVFVSHRWVNESSRPTGFRQ
HAAAGGDGDGTPDVDSAKHAFLVEGLSSILASLPREVAVFLWIDFSCIDQ
DNEESKRKGARSLAAYMQLSDAVFTPYAEILYPSSGGEGEARTGSG*
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mRNA from alignment at L-elsbetiae_contig1037:11754..12980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1037.392.1 ID=mRNA_L-elsbetiae_contig1037.392.1|Name=mRNA_L-elsbetiae_contig1037.392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1227bp|location=Sequence derived from alignment at L-elsbetiae_contig1037:11754..12980- (Laminarionema elsbetiae ELsaHSoW15)
AGGCGCAACGAGAGAGCAAAAGCCAAATCGGGGGAAGGGACGTTCTCCTT
GCCACCGTCTCCTTCTGGCAGCATCGAAGATGCAACAGGCGAGAAGAACT
CGGCGGCAGCCTCTTCCCAACTGGCAGAAGCCTTGGCAGAAGCCCCCGTT
GCGACCGTACATATCGTGTCGTCCAGGGAAGGGGAGGGAACTCCTAGCGC
GACAAGAGGAAGAGGCGTTGGAATGCCCCCGGTCATGGGCGCAAAGTCCG
CGGGGGCGCTCTCGCAGCCGTCTCCTTCCACACCACGCACAGAGGAATCC
TCGCCATCAACCGCATCGTTGGCGCCCGTTCCTGTCGTGCAAACTCCTAT
CCGATCATCATCGTGGTTGTCCTCAGCGCGTCGGGGCGGTGTTGGGCCGT
TTGCGTTTCCGCCGGAGGCACCGATGTTCGTTTTACCACTCGCAGGGCTA
AGCGCGGCGAGATGTTTCCCCAAGTATCAAAATGCGATGAGCAGCGGGGC
GCTTGTGCCGTACGACTCTCTAGACCGCAACAACGCCTTCGTGGTGTTTG
TGTCGCACCGCTGGGTCAACGAGTCCAGTCGGCCGACGGGGTTCCGACAG
CACGCGGCGGCCGGCGGAGACGGGGACGGGACGCCGGACGTCGATTCAGC
CAAGCATGCTTTTCTCGTTGAAGGATTGAGCTCAATCCTGGCTTCGCTTC
CTCGGGAAGTGGCCGTCTTTTTGTGGATCGATTTTTCCTGCATCGACCAG
GTGAGGGGGTACAAGAAGCCCTGCACGTGAGGAGAACTTGCAGGAGACTG
CCACATATTTTGCTGGGTTGCTTAAGCAAAAGTAGCGTGCATCAGCAACA
TGTGGCCTAAATAAGTGTAATTGCGCGGGTATGGAGGTGAACGGGTGTCA
CGGTGAAGAAACACGCGGGAACACAACACGGCGTTTAACTTCATCAAGTT
CATTGATCCTACTTAGCGATATATACACGTACCTTTCAGCTGCGGCGGAT
CTCGCTGCCACTCCAACCACCTCACCCCCCCCCCCGGCCCCGCCACATCA
CTCATCTCATTCCACACTTCTCTTCTCTTCCTCCAGGACAACGAGGAGAG
CAAGCGCAAGGGTGCTCGGAGCCTGGCGGCCTACATGCAGCTCAGCGATG
CCGTCTTCACTCCTTACGCGGAAATCCTTTACCCATCTAGTGGAGGGGAA
GGAGAGGCAAGAACAGGGTCGGGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1037:11754..12980-

>mRNA_L-elsbetiae_contig1037.392.1 ID=mRNA_L-elsbetiae_contig1037.392.1|Name=mRNA_L-elsbetiae_contig1037.392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1782bp|location=Sequence derived from alignment at L-elsbetiae_contig1037:11754..12980- (Laminarionema elsbetiae ELsaHSoW15)
AGGCGCAACGAGAGAGCAAAAGCCAAATCGGGGGAAGGGACGTTCTCCTT
GCCACCGTCTCCTTCTGGCAGCATCGAAGATGCAACAGGCGAGAAGAACT
CGGCGGCAGCCTCTTCCCAACTGGCAGAAGCCTTGGCAGAAGCCCCCGTT
GCGACCGTACATATCGTGTCGTCCAGGGAAGGGGAGGGAACTCCTAGCGC
GACAAGAGGAAGAGGCGTTGGAATGCCCCCGGTCATGGGCGCAAAGTCCG
CGGGGGCGCTCTCGCAGCCGTCTCCTTCCACACCACGCACAGAGGAATCC
TCGCCATCAACCGCATCGTTGGCGCCCGTTCCTGTCGTGCAAACTCCTAT
CCGATCATCATCGTGGTTGTCCTCAGCGCGTCGGGGCGGTGTTGGGCCGT
TTGCGTTTCCGCCGGAGGCACCGATGTTCGTTTTACCACTCGCAGGGCTA
AGCGCGGCGAGATGTTTCCCCAAGTATCAAAATGCGATGAGCAGCGGGGC
GCTTGTGCCGTACGACTCTCTAGACCGCAACAACGCCTTCGTGGTGTTTG
TGTCGCACCGCTGGGTCAACGAGTCCAGTCGGCCGACGGGGTTCCGACAG
CACGCGGCGGCCGGCGGAGACGGGGACGGGACGCCGGACGTCGATTCAGC
CAAGCATGCTTTTCTCGTTGAAGGATTGAGCTCAATCCTGGCTTCGCTTC
CTCGGGAAGTGGCCGTCTTTTTGTGGATCGATTTTTCCTGCATCGACCAG
AGGCGCAACGAGAGAGCAAAAGCCAAATCGGGGGAAGGGACGTTCTCCTT
GCCACCGTCTCCTTCTGGCAGCATCGAAGATGCAACAGGCGAGAAGAACT
CGGCGGCAGCCTCTTCCCAACTGGCAGAAGCCTTGGCAGAAGCCCCCGTT
GCGACCGTACATATCGTGTCGTCCAGGGAAGGGGAGGGAACTCCTAGCGC
GACAAGAGGAAGAGGCGTTGGAATGCCCCCGGTCATGGGCGCAAAGTCCG
CGGGGGCGCTCTCGCAGCCGTCTCCTTCCACACCACGCACAGAGGAATCC
TCGCCATCAACCGCATCGTTGGCGCCCGTTCCTGTCGTGCAAACTCCTAT
CCGATCATCATCGTGGTTGTCCTCAGCGCGTCGGGGCGGTGTTGGGCCGT
TTGCGTTTCCGCCGGAGGCACCGATGTTCGTTTTACCACTCGCAGGGCTA
AGCGCGGCGAGATGTTTCCCCAAGTATCAAAATGCGATGAGCAGCGGGGC
GCTTGTGCCGTACGACTCTCTAGACCGCAACAACGCCTTCGTGGTGTTTG
TGTCGCACCGCTGGGTCAACGAGTCCAGTCGGCCGACGGGGTTCCGACAG
CACGCGGCGGCCGGCGGAGACGGGGACGGGACGCCGGACGTCGATTCAGC
CAAGCATGCTTTTCTCGTTGAAGGATTGAGCTCAATCCTGGCTTCGCTTC
CTCGGGAAGTGGCCGTCTTTTTGTGGATCGATTTTTCCTGCATCGACCAG
GACAACGAGGAGAGCAAGCGCAAGGGTGCTCGGAGCCTGGCGGCCTACAT
GCAGCTCAGCGATGCCGTCTTCACTCCTTACGCGGAAATCCTTTACCCAT
CTAGTGGAGGGGAAGGAGAGGCAAGAACAGGGTCGGGCTGAGACAACGAG
GAGAGCAAGCGCAAGGGTGCTCGGAGCCTGGCGGCCTACATGCAGCTCAG
CGATGCCGTCTTCACTCCTTACGCGGAAATCCTTTACCCATCTAGTGGAG
GGGAAGGAGAGGCAAGAACAGGGTCGGGCTGA
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