mRNA_L-elsbetiae_contig15586.3913.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15586.3913.1
Unique NamemRNA_L-elsbetiae_contig15586.3913.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15586.3913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15586contigL-elsbetiae_contig15586:1009..1483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size369
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.6471255-UTR-L-elsbetiae_contig15586:1008..11141622815637.6471255-UTR-L-elsbetiae_contig15586:1008..1114Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15586 1009..1114 +
1691683006.5777357-UTR-L-elsbetiae_contig15586:1008..11141691683006.5777357-UTR-L-elsbetiae_contig15586:1008..1114Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15586 1009..1114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.6593165-CDS-L-elsbetiae_contig15586:1114..14831622815637.6593165-CDS-L-elsbetiae_contig15586:1114..1483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15586 1115..1483 +
1691683006.5866017-CDS-L-elsbetiae_contig15586:1114..14831691683006.5866017-CDS-L-elsbetiae_contig15586:1114..1483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15586 1115..1483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15586.3913.1prot_L-elsbetiae_contig15586.3913.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15586 1115..1483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15586.3913.1

>prot_L-elsbetiae_contig15586.3913.1 ID=prot_L-elsbetiae_contig15586.3913.1|Name=mRNA_L-elsbetiae_contig15586.3913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MEAPQISVGVVGDWALFILSGFLCTSSFINKDRNYGGGEANMCVLNISPD
RPLPNLAKSCSEDNKTEPGACQIGQLMCRPLEKSCECPKIHDDNLIPSSR
RGKVARKSSKRQDFDFRIFFFE*
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mRNA from alignment at L-elsbetiae_contig15586:1009..1483+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15586.3913.1 ID=mRNA_L-elsbetiae_contig15586.3913.1|Name=mRNA_L-elsbetiae_contig15586.3913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=475bp|location=Sequence derived from alignment at L-elsbetiae_contig15586:1009..1483+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTGTCGGGAGAAAAATCAGGACACCTATCTATTGCTCAAGATCGAAAA
TTTGAGTTTGTGAGGGGAAGGGGGGAGGGGTATGCTGCAGCCCATATATA
CTTGCTATGGAGGCCCCGCAGATTTCAGTGGGGGTGGTTGGGGATTGGGC
GTTATTTATTTTGAGCGGATTCCTCTGTACTAGTTCCTTTATAAACAAAG
ATCGAAATTATGGTGGGGGGGAGGCAAACATGTGTGTCCTGAATATTTCT
CCCGACAGACCCTTGCCAAATCTAGCCAAATCTTGCTCCGAGGACAACAA
AACCGAACCCGGAGCGTGCCAGATTGGACAGCTGATGTGTAGACCTCTGG
AGAAGAGCTGCGAATGTCCCAAAATACATGACGACAATCTGATTCCGAGC
TCTCGGCGAGGAAAAGTGGCCAGAAAAAGTTCAAAAAGGCAAGATTTTGA
TTTCAGGATTTTTTTCTTTGAATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15586:1009..1483+

>mRNA_L-elsbetiae_contig15586.3913.1 ID=mRNA_L-elsbetiae_contig15586.3913.1|Name=mRNA_L-elsbetiae_contig15586.3913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig15586:1009..1483+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGCCCCGCAGATTTCAGTGGGGGTGGTTGGGGATTGGGCGTTATT
TATTTTGAGCGGATTCCTCTGTACTAGTTCCTTTATAAACAAAGATCGAA
ATTATGGTGGGGGGGAGGCAAACATGTGTGTCCTGAATATTTCTCCCGAC
AGACCCTTGCCAAATCTAGCCAAATCTTGCTCCGAGGACAACAAAACCGA
ACCCGGAGCGTGCCAGATTGGACAGCTGATGTGTAGACCTCTGGAGAAGA
GCTGCGAATGTCCCAAAATACATGACGACAATCTGATTCCGAGCTCTCGG
CGAGGAAAAGTGGCCAGAAAAAGTTCAAAAAGGCAAGATTTTGATTTCAG
GATTTTTTTCTTTGAATAAATGGAGGCCCCGCAGATTTCAGTGGGGGTGG
TTGGGGATTGGGCGTTATTTATTTTGAGCGGATTCCTCTGTACTAGTTCC
TTTATAAACAAAGATCGAAATTATGGTGGGGGGGAGGCAAACATGTGTGT
CCTGAATATTTCTCCCGACAGACCCTTGCCAAATCTAGCCAAATCTTGCT
CCGAGGACAACAAAACCGAACCCGGAGCGTGCCAGATTGGACAGCTGATG
TGTAGACCTCTGGAGAAGAGCTGCGAATGTCCCAAAATACATGACGACAA
TCTGATTCCGAGCTCTCGGCGAGGAAAAGTGGCCAGAAAAAGTTCAAAAA
GGCAAGATTTTGATTTCAGGATTTTTTTCTTTGAATAA
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