mRNA_L-elsbetiae_contig15583.3912.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15583.3912.1
Unique NamemRNA_L-elsbetiae_contig15583.3912.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15583.3912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15583contigL-elsbetiae_contig15583:3526..4010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size485
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15583.3912.1prot_L-elsbetiae_contig15583.3912.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15583 3621..3956 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.5937283-UTR-L-elsbetiae_contig15583:3525..36201622815637.5937283-UTR-L-elsbetiae_contig15583:3525..3620Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15583 3526..3620 +
1691683006.548413-UTR-L-elsbetiae_contig15583:3525..36201691683006.548413-UTR-L-elsbetiae_contig15583:3525..3620Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15583 3526..3620 +
1622815637.61607-UTR-L-elsbetiae_contig15583:3956..40101622815637.61607-UTR-L-elsbetiae_contig15583:3956..4010Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15583 3957..4010 +
1691683006.56966-UTR-L-elsbetiae_contig15583:3956..40101691683006.56966-UTR-L-elsbetiae_contig15583:3956..4010Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15583 3957..4010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.6057436-CDS-L-elsbetiae_contig15583:3620..39561622815637.6057436-CDS-L-elsbetiae_contig15583:3620..3956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15583 3621..3956 +
1691683006.5576491-CDS-L-elsbetiae_contig15583:3620..39561691683006.5576491-CDS-L-elsbetiae_contig15583:3620..3956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15583 3621..3956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15583.3912.1

>prot_L-elsbetiae_contig15583.3912.1 ID=prot_L-elsbetiae_contig15583.3912.1|Name=mRNA_L-elsbetiae_contig15583.3912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MRCWLRPPNQPSTQNTINRDATTREVTTPNLQSFTLSVSLTRTFDGQNSS
RIRQRTRLREPHGQLLSKEQPAHSKGPPYFTRSAEIARLPKECVSLSLPS
PPPRPLADLCC*
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mRNA from alignment at L-elsbetiae_contig15583:3526..4010+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15583.3912.1 ID=mRNA_L-elsbetiae_contig15583.3912.1|Name=mRNA_L-elsbetiae_contig15583.3912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=485bp|location=Sequence derived from alignment at L-elsbetiae_contig15583:3526..4010+ (Laminarionema elsbetiae ELsaHSoW15)
GCTTCGTTTTGACAACTACGAGCGGTCGCTCTTGGCAACCCACACAAACA
TCCATCTTGGTCGACATACATACGTACCACAACCGACTTAACTCAATGCG
CTGCTGGTTACGGCCCCCCAACCAGCCCTCGACGCAAAATACCATTAACC
GCGACGCGACTACCAGGGAAGTGACAACTCCAAACCTGCAGAGTTTCACG
CTTTCCGTCTCACTTACTCGCACGTTCGACGGGCAAAACAGCAGTCGTAT
AAGACAGCGAACCAGGCTCCGAGAGCCTCACGGGCAACTTCTCAGCAAGG
AGCAACCAGCCCACTCCAAAGGCCCTCCTTATTTTACACGTTCAGCAGAA
ATAGCAAGGCTCCCCAAGGAGTGCGTGTCTCTCTCCCTGCCATCCCCCCC
CCCCCGACCGCTGGCCGATCTCTGTTGCTGAGACCTTCACCAGTATTGTT
CTTGGGTCTCTCAATCAAACCTTGGTGTTGTGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15583:3526..4010+

>mRNA_L-elsbetiae_contig15583.3912.1 ID=mRNA_L-elsbetiae_contig15583.3912.1|Name=mRNA_L-elsbetiae_contig15583.3912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig15583:3526..4010+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCTGCTGGTTACGGCCCCCCAACCAGCCCTCGACGCAAAATACCAT
TAACCGCGACGCGACTACCAGGGAAGTGACAACTCCAAACCTGCAGAGTT
TCACGCTTTCCGTCTCACTTACTCGCACGTTCGACGGGCAAAACAGCAGT
CGTATAAGACAGCGAACCAGGCTCCGAGAGCCTCACGGGCAACTTCTCAG
CAAGGAGCAACCAGCCCACTCCAAAGGCCCTCCTTATTTTACACGTTCAG
CAGAAATAGCAAGGCTCCCCAAGGAGTGCGTGTCTCTCTCCCTGCCATCC
CCCCCCCCCCGACCGCTGGCCGATCTCTGTTGCTGAATGCGCTGCTGGTT
ACGGCCCCCCAACCAGCCCTCGACGCAAAATACCATTAACCGCGACGCGA
CTACCAGGGAAGTGACAACTCCAAACCTGCAGAGTTTCACGCTTTCCGTC
TCACTTACTCGCACGTTCGACGGGCAAAACAGCAGTCGTATAAGACAGCG
AACCAGGCTCCGAGAGCCTCACGGGCAACTTCTCAGCAAGGAGCAACCAG
CCCACTCCAAAGGCCCTCCTTATTTTACACGTTCAGCAGAAATAGCAAGG
CTCCCCAAGGAGTGCGTGTCTCTCTCCCTGCCATCCCCCCCCCCCCGACC
GCTGGCCGATCTCTGTTGCTGA
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