mRNA_L-elsbetiae_contig10369.391.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10369.391.1
Unique NamemRNA_L-elsbetiae_contig10369.391.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10369.391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10369contigL-elsbetiae_contig10369:3506..4783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size821
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10369.391.1prot_L-elsbetiae_contig10369.391.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10369 3548..4535 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815263.5295808-UTR-L-elsbetiae_contig10369:3505..35471622815263.5295808-UTR-L-elsbetiae_contig10369:3505..3547Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10369 3506..3547 -
1691682804.4366398-UTR-L-elsbetiae_contig10369:3505..35471691682804.4366398-UTR-L-elsbetiae_contig10369:3505..3547Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10369 3506..3547 -
1622815263.5608776-UTR-L-elsbetiae_contig10369:4535..47831622815263.5608776-UTR-L-elsbetiae_contig10369:4535..4783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10369 4536..4783 -
1691682804.4612265-UTR-L-elsbetiae_contig10369:4535..47831691682804.4612265-UTR-L-elsbetiae_contig10369:4535..4783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10369 4536..4783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815263.5397265-CDS-L-elsbetiae_contig10369:3547..36121622815263.5397265-CDS-L-elsbetiae_contig10369:3547..3612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10369 3548..3612 -
1691682804.4453154-CDS-L-elsbetiae_contig10369:3547..36121691682804.4453154-CDS-L-elsbetiae_contig10369:3547..3612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10369 3548..3612 -
1622815263.549277-CDS-L-elsbetiae_contig10369:4069..45351622815263.549277-CDS-L-elsbetiae_contig10369:4069..4535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10369 4070..4535 -
1691682804.4533565-CDS-L-elsbetiae_contig10369:4069..45351691682804.4533565-CDS-L-elsbetiae_contig10369:4069..4535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10369 4070..4535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10369.391.1

>prot_L-elsbetiae_contig10369.391.1 ID=prot_L-elsbetiae_contig10369.391.1|Name=mRNA_L-elsbetiae_contig10369.391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
MANVVSKRCAILGCTTIACHGEETTGTRKFCARHAEDGLVRLSGLPSGES
NISGRTDDARSRDSGTASRGGSGGRRRSRAASHTPAEPSSGSRDANKRAR
QSAGVENLHSIRVKREGVDTSVPDDEKSRVCLEPDGLVKTEGMEVSFKAE
PTEAAGGARVARTERRKPASGKSRGF*
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mRNA from alignment at L-elsbetiae_contig10369:3506..4783-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10369.391.1 ID=mRNA_L-elsbetiae_contig10369.391.1|Name=mRNA_L-elsbetiae_contig10369.391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1278bp|location=Sequence derived from alignment at L-elsbetiae_contig10369:3506..4783- (Laminarionema elsbetiae ELsaHSoW15)
ACTGCCGTGACCATGCCGACGACGGGACGATGAACGTGAAGCACAAGAGA
TGCACCCACCACGGTTGTACCAAGCAGCCGTCATACGGCAAGGTTTGTGG
CACGGCGGAGTACTGCCGTGACCATGCCTCGGACGGGATAGTGGGCGTGA
AGAGCAAGAGATGCACCCACCACGGTTGTACGAAGTGGCCATAATTCGGC
ACGGCTGGTGGCACGGCAGAGTGCTGCCGTGACCATGCCAAGGACGGGAT
GGCTAATGTTGTCAGCAAGAGGTGTGCTATTCTTGGGTGCACCACGATAG
CCTGCCACGGCGAGGAAACCACTGGCACCCGCAAGTTCTGCGCACGACAT
GCAGAGGACGGCCTGGTCCGTCTTTCTGGCCTGCCCAGCGGAGAGAGCAA
CATAAGTGGTAGAACTGATGATGCCAGGTCAAGGGATAGTGGCACGGCTA
GCCGTGGTGGTTCCGGTGGACGGCGGAGGAGCCGCGCTGCTTCACACACC
CCGGCGGAGCCTTCCTCGGGAAGCAGGGATGCAAACAAACGAGCCCGCCA
GAGTGCTGGGGTTGAGAACTTACACTCGATTCGTGTGAAAAGAGAGGGGG
TTGACACCAGTGTGCCCGACGACGAGAAATCTAGGGTATGCCTGGAGCCA
GATGGTTTGGTGAAGACGGAAGGCATGGAAGTGTCTTTCAAGGCGGAGCC
TACGGAAGCTGCAGGTGCGCTGAATGCAGGAAGTGTTTCCGTCGGAAGCT
CTACGATACCTTGGTTGTAGTAGGCAGTGAGGGAAAGCTTTTCAAAGGCA
GGCCCAGGTGCAGTAGTAGGACATACACGATCCAGCAACTCTGCACACGC
ATCACAGATGTCGGAACAGTGCGGGCTTGAATGTACCTTGTGCAAACCAG
AGCTTCCCCGTCTAAAGGGCTACCTCAACCGCGACACCTCATTTGATTGG
CAGTGGTTTTGGCTCCTCGTGATCCTGCTCGGAGACCAAATATTTGCGGG
CTTGTCCGGTGTAGTTTTTTGCCGCAGAGATGTGTGTATCAAGCCTTTGC
CGTGACCGCACCCTGTGATAAGACCCGGGCATTAGACGCCTCCGCCTTCC
GTCTATGCGGGCCTCACTTGCTAGCGTATCATCGTGACATGCCTCTTGTG
CACCTCTCCGATCAAACGCAGGAGGTGCACGAGTAGCGAGGACGGAGAGG
AGAAAGCCCGCGAGCGGGAAATCCCGAGGTTTCTGACATCGAACTAGCAG
CAGCGACACCGCAGTATACGCCGGTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10369:3506..4783-

>mRNA_L-elsbetiae_contig10369.391.1 ID=mRNA_L-elsbetiae_contig10369.391.1|Name=mRNA_L-elsbetiae_contig10369.391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig10369:3506..4783- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTAATGTTGTCAGCAAGAGGTGTGCTATTCTTGGGTGCACCACGAT
AGCCTGCCACGGCGAGGAAACCACTGGCACCCGCAAGTTCTGCGCACGAC
ATGCAGAGGACGGCCTGGTCCGTCTTTCTGGCCTGCCCAGCGGAGAGAGC
AACATAAGTGGTAGAACTGATGATGCCAGGTCAAGGGATAGTGGCACGGC
TAGCCGTGGTGGTTCCGGTGGACGGCGGAGGAGCCGCGCTGCTTCACACA
CCCCGGCGGAGCCTTCCTCGGGAAGCAGGGATGCAAACAAACGAGCCCGC
CAGAGTGCTGGGGTTGAGAACTTACACTCGATTCGTGTGAAAAGAGAGGG
GGTTGACACCAGTGTGCCCGACGACGAGAAATCTAGGGTATGCCTGGAGC
CAGATGGTTTGGTGAAGACGGAAGGCATGGAAGTGTCTTTCAAGGCGGAG
CCTACGGAAGCTGCAGATGGCTAATGTTGTCAGCAAGAGGTGTGCTATTC
TTGGGTGCACCACGATAGCCTGCCACGGCGAGGAAACCACTGGCACCCGC
AAGTTCTGCGCACGACATGCAGAGGACGGCCTGGTCCGTCTTTCTGGCCT
GCCCAGCGGAGAGAGCAACATAAGTGGTAGAACTGATGATGCCAGGTCAA
GGGATAGTGGCACGGCTAGCCGTGGTGGTTCCGGTGGACGGCGGAGGAGC
CGCGCTGCTTCACACACCCCGGCGGAGCCTTCCTCGGGAAGCAGGGATGC
AAACAAACGAGCCCGCCAGAGTGCTGGGGTTGAGAACTTACACTCGATTC
GTGTGAAAAGAGAGGGGGTTGACACCAGTGTGCCCGACGACGAGAAATCT
AGGGTATGCCTGGAGCCAGATGGTTTGGTGAAGACGGAAGGCATGGAAGT
GTCTTTCAAGGCGGAGCCTACGGAAGCTGCAGGAGGTGCACGAGTAGCGA
GGACGGAGAGGAGAAAGCCCGCGAGCGGGAAATCCCGAGGTTTCTGAGAG
GTGCACGAGTAGCGAGGACGGAGAGGAGAAAGCCCGCGAGCGGGAAATCC
CGAGGTTTCTGA
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