mRNA_L-elsbetiae_contig1557.3910.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1557.3910.1
Unique NamemRNA_L-elsbetiae_contig1557.3910.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1557.3910.1 vs. uniprot
Match: A0A6H5JH46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH46_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 8.940e-9
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 2 
Query:   53 MLMLCSVLGASHSLI----VSPGGELKGPRAVISFAEHQTTDDRRTYLQGAQEQGYTCWVFPNYHSAAV---CIQNPGSIYS 277
            +L+L   LG S   I    ++P    +G R V  F E+QTT+DRR+YLQ A+EQGYTC +  + +  AV   C + P + Y+
Sbjct:   10 ILLLIISLGQSRGNIDVRFIAPSAAFEGERFVSFFREYQTTEDRRSYLQAAREQGYTCSMLEHNYQEAVGLFCAKTPTTTYT 91
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1557.3910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH46_9PHAE8.940e-940.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1557contigL-elsbetiae_contig1557:20498..21004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog2880.D7FK45
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E2B0@1,2S9J2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size277
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1557.3910.1prot_L-elsbetiae_contig1557.3910.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1557 20523..21004 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.4407427-UTR-L-elsbetiae_contig1557:20497..205221622815637.4407427-UTR-L-elsbetiae_contig1557:20497..20522Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1557 20498..20522 +
1691683006.4450238-UTR-L-elsbetiae_contig1557:20497..205221691683006.4450238-UTR-L-elsbetiae_contig1557:20497..20522Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1557 20498..20522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.4505892-CDS-L-elsbetiae_contig1557:20522..207531622815637.4505892-CDS-L-elsbetiae_contig1557:20522..20753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1557 20523..20753 +
1691683006.45771-CDS-L-elsbetiae_contig1557:20522..207531691683006.45771-CDS-L-elsbetiae_contig1557:20522..20753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1557 20523..20753 +
1622815637.4620476-CDS-L-elsbetiae_contig1557:20983..210041622815637.4620476-CDS-L-elsbetiae_contig1557:20983..21004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1557 20984..21004 +
1691683006.4684577-CDS-L-elsbetiae_contig1557:20983..210041691683006.4684577-CDS-L-elsbetiae_contig1557:20983..21004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1557 20984..21004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1557.3910.1

>prot_L-elsbetiae_contig1557.3910.1 ID=prot_L-elsbetiae_contig1557.3910.1|Name=mRNA_L-elsbetiae_contig1557.3910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
MVPFSGNLCMLMLCSVLGASHSLIVSPGGELKGPRAVISFAEHQTTDDRR
TYLQGAQEQGYTCWVFPNYHSAAVCIQNPGSIYS
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mRNA from alignment at L-elsbetiae_contig1557:20498..21004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1557.3910.1 ID=mRNA_L-elsbetiae_contig1557.3910.1|Name=mRNA_L-elsbetiae_contig1557.3910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=507bp|location=Sequence derived from alignment at L-elsbetiae_contig1557:20498..21004+ (Laminarionema elsbetiae ELsaHSoW15)
GACCTCTCGTACAATTCCGCCCAAGATGGTGCCCTTCTCTGGGAACTTAT
GCATGTTGATGCTGTGTTCAGTGCTCGGAGCCAGCCACAGTTTGATCGTC
TCACCTGGCGGTGAACTGAAAGGCCCGCGGGCGGTCATCTCCTTTGCCGA
ACACCAGACGACGGACGACCGCCGCACGTACCTGCAAGGGGCCCAAGAGC
AAGGATACACGTGTTGGGTGTTCCCGAACTACCACTCTGCAGCCGTTTGT
ATTCAGGTTGAATACATTCCGTTAAATCTTGATTACGGTGGGGAAGTGTG
TTGTTGGTGGTCAGTCATCAGGTCACGGCGCTACTGGTGTATTGTAAAAA
AGACAGAAATGTCCTACGATATGGTCGGAAGTCGTGGGCGGTGGTGCACT
AACCCATCTAATATGTCAGGCTACATGTATGAAGCTTATAATATTTCATT
CTCTATCCTTTGATATCGTTTTATTGTTGTCCACAGAACCCCGGGAGTAT
CTACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1557:20498..21004+

>mRNA_L-elsbetiae_contig1557.3910.1 ID=mRNA_L-elsbetiae_contig1557.3910.1|Name=mRNA_L-elsbetiae_contig1557.3910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig1557:20498..21004+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCCCTTCTCTGGGAACTTATGCATGTTGATGCTGTGTTCAGTGCT
CGGAGCCAGCCACAGTTTGATCGTCTCACCTGGCGGTGAACTGAAAGGCC
CGCGGGCGGTCATCTCCTTTGCCGAACACCAGACGACGGACGACCGCCGC
ACGTACCTGCAAGGGGCCCAAGAGCAAGGATACACGTGTTGGGTGTTCCC
GAACTACCACTCTGCAGCCGTTTGTATTCAGATGGTGCCCTTCTCTGGGA
ACTTATGCATGTTGATGCTGTGTTCAGTGCTCGGAGCCAGCCACAGTTTG
ATCGTCTCACCTGGCGGTGAACTGAAAGGCCCGCGGGCGGTCATCTCCTT
TGCCGAACACCAGACGACGGACGACCGCCGCACGTACCTGCAAGGGGCCC
AAGAGCAAGGATACACGTGTTGGGTGTTCCCGAACTACCACTCTGCAGCC
GTTTGTATTCAGAACCCCGGGAGTATCTACAGCAACCCCGGGAGTATCTA
CAGC
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