mRNA_L-elsbetiae_contig15560.3901.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5L8M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M0_9PHAE) HSP 1 Score: 378 bits (971), Expect = 1.710e-121 Identity = 208/372 (55.91%), Postives = 251/372 (67.47%), Query Frame = 1 Query: 4 PRRGVALPRPPLALPLFSTLRNMIPGSQTAAGSGXXXXKRAAVEVLPHENRSPSPGHESNKQPRTAGRGISASGSTGGRPKGHLAQQSKSCHTCRNNRPTDDGRHACLG-----EGEGCHYWLCRKCVWKWQQTSGLAGGFRCCLHGGNREWCGC-QRFGARKGLP-PVLERCKAAQNRRVSTDVYAFPTRTATSPTXXXXXXXXXXXXXXXTTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVENLSSAGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEESGSKMFQCKVGEG 1098 PRR A PRP LA+P ++P QT SG KRAA E L H + P+ H+S+ Q RT G G SAS STGGR KG LAQQ+ +CH CR N+PT + RHAC G E GC+YW+C+KC+ +W Q SG GF CCLH G REWC C +R ++ V++R + AQNR+ STDVY FPT T+ SPT TTYSVC SNSQNRVAVIKAGD F+CSR +CR +E LSSA GDT SALP+RC HAEVV +S + +A+ LLSA F+ AL K+PAGTFN T +MRARA+QAAKEG+PLLV +G+TKYFAVRDG KFNR+VIGEWGHVKY++ GSK+FQCK G Sbjct: 176 PRR--AQPRPALAMP------QLLPVPQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGDEGGEARGCNYWVCQKCMGRWMQASGQPRGFWCCLHSG-REWCPCAERVSTKRSKTVSVVDRSRLAQNRQESTDVYEFPTTTS-SPTAATTAASPTPPSGPGTTYSVCTSNSQNRVAVIKAGDRFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEVVIEAERTSMPMPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKASNG 537
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5L6Z2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE) HSP 1 Score: 370 bits (951), Expect = 3.980e-117 Identity = 205/372 (55.11%), Postives = 249/372 (66.94%), Query Frame = 1 Query: 4 PRRGVALPRPPLALPLFSTLRNMIPGSQTAAGSGXXXXKRAAVEVLPHENRSPSPGHESNKQPRTAGRGISASGSTGGRPKGHLAQQSKSCHTCRNNRPTDDGRHACLG-----EGEGCHYWLCRKCVWKWQQTSGLAGGFRCCLHGGNREWCGC-QRFGARKGLP-PVLERCKAAQNRRVSTDVYAFPTRTATSPTXXXXXXXXXXXXXXXTTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVENLSSAGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEESGSKMFQCKVGEG 1098 PRR A PRP LA+P ++P QT SG KRAA E L H + P+ H+S+ Q RT G G SAS STGGR KG LAQQ+ +CH CR N+PT + RHAC G E GC+YW+ +KC+ +W Q SG GF CCLH G REWC C +R ++ V++R + AQNR+ STDVY FPT T+ SPT TTYSVC SN QNRVAVIKAG F+CSR +CR +E LSSA GDT SALP+RC HAEVV +S + +A+ LLSA F+ AL K+PAGTFN T +MRARA+QAAKEG+PLLV +G+TKYFAVRDG KFNR+VIGEWGHVKY++ GSK+FQCK +G Sbjct: 92 PRR--AQPRPALAMP------QLLPVPQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGDEGGEARGCNYWVRQKCMGRWMQASGQPRGFWCCLHSG-REWCPCAERISTKRSKAVSVVDRSRLAQNRQESTDVYEFPTTTS-SPTAATTAASPTPPSGPGTTYSVCTSNGQNRVAVIKAGARFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEVVIEAEKTSMPMPKADALLSAGDFESALDKVPAGTFNQRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKASDG 453
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: D7FN79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN79_ECTSI) HSP 1 Score: 293 bits (751), Expect = 1.500e-89 Identity = 176/369 (47.70%), Postives = 224/369 (60.70%), Query Frame = 1 Query: 7 RRGVALPRPPLALPLFSTLRNMIPGSQTAAGSGXXXXKRAAVEVLPHENRSPSPGHESNKQPRTAGRGISASGSTGGRPKGHLAQQSKSCHTCRNNRPTDDGRHACL-GEGEGCHYWLCRKCVWKWQQTSGLAGGFRCCLHGGNREWCGCQ-RFGARKGLPPVLERCKAAQNRRVSTDVYAFPTRTATSPTXXXXXXXXXXXXXXXTTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVEN--LSSAGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEAFQCALAK-IPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEE-SGSKMFQCKVGE 1095 R G PR PLA+P+F +R P QT SG R A + HEN + S ESN+Q A G+S+S STGGR KG L +Q+KSCH CR N+P ++AC+ G +YWLC+ C +W + SG+ G F CCLH G ++WC C R R+G P LER A++R ST ++ FP RT + T TYSVC S RVAVIK GDEF+CSR +CR V+N S+A G T+SALPA C HAEVV SS + A+ L SAE F+ AL +PAG F+ T AM ARA+QAA++GVP+LVG+G TKYF + DG + NR V+G W HVKY++ GSK+FQCKVGE Sbjct: 145 RPGANQPRSPLAMPMFIPIRTS-PAPQTTGTSGGVRENRGAGTFV-HENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPGQGIKYACVDGRNPRWNYWLCKSCFKEWTEASGVDG-FLCCLHRG-KQWCPCNSRKRVRRGPVPALERSALAKSRIGSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKDCRRVKNPQTSAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSAEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLQNNRKVVGGWAHVKYDDRDGSKIFQCKVGE 509
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5KAW8_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW8_9PHAE) HSP 1 Score: 221 bits (564), Expect = 2.690e-61 Identity = 128/275 (46.55%), Postives = 172/275 (62.55%), Query Frame = 1 Query: 211 ISASGSTGGRPKGHLAQQSKSCHTCRNNRPTDDGRHACLGEGEGCHYWLCRKCVWKWQQTSGLAGGFRCCLHGGNREWCGCQ-RFGARKGLPPVLERCKAAQNRRVSTDVYAFPTRTATSPTXXXXXXXXXXXXXXXTTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVENLSSAGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIG 1032 +S+S STGGR KG L +++++CH CR P ++AC G+ C YWLC+KC+ +W + SG G F+CCLH G+ WC C+ R R G VL+R A+ R V T V+ FP + T TTYSVC S S NRVAVIKAG+++MCSRN+C + G T+ LPARCPHAEVV SST + +A+ + SAE F+ AL +P GTFN +T AM RA+QAA+EGVP+LVG+G T+YF ++DG + +R+VIG Sbjct: 1 MSSSVSTGGRRKGQLTEEARTCHECRTKDPRQGIKNAC-GDS-ACCYWLCQKCLERWTEQSGRDG-FQCCLHYGSL-WCPCKNRTRVRTGPVAVLDRSTQAKTRHVRTSVFEFPAPSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDC--------SATGVTDPPLPARCPHAEVVLEAEGSSTPMPKADPVFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGSTRYFGIKDGHENDRTVIG 263
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5KVV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV8_9PHAE) HSP 1 Score: 185 bits (469), Expect = 3.120e-51 Identity = 109/246 (44.31%), Postives = 145/246 (58.94%), Query Frame = 1 Query: 376 KWQQTSGLAGGFRCCLHGGNREWCGC--QRFGARKGLPPVLERCKAAQNRRVSTDVYAFPTRTATSPTXXXXXXXXXXXXXXXTTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVENLSS--AGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLL-SAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEESGSKM-FQCKVGE 1095 KW ++S F CC+H +E C C ++ ARKG +L+R A+ R V T V+ P+ T T+PT TTYS C S QNRV+V+++ +MCSR C+ +E LS+ A GDT L C HA+VV SS ++ A LL SAE F AL +P GTFN T A+RAR +A + G+P+LV +GDTK+FAVRDGP FNR+++G W HVK EESG K +CKVG+ Sbjct: 3 KWLRSSAQLSHFMCCVHF-EKEPCPCGKRKKNARKGPTSLLDRSTQARTRNVGTSVFELPS-TQTTPTTADSTPTPAPTPREGTTYSTCTSVGQNRVSVVESNGRYMCSRPECKTIETLSAKAAAGGDTECVLRRHCAHADVVVQAKASSVPMAGATALLPSAEEFLRALDAVPTGTFNKHTMQAIRARVARAEELGIPVLVKLGDTKFFAVRDGPNFNRNIVGGWAHVKCEESGGKTTLRCKVGQ 246
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5JH13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH13_9PHAE) HSP 1 Score: 191 bits (486), Expect = 2.660e-49 Identity = 107/208 (51.44%), Postives = 135/208 (64.90%), Query Frame = 1 Query: 475 GLPPVLERCKAAQNRRVSTDVYAFPTRTATSPTXXXXXXXXXXXXXXXTTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVENL--SSAGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEESG-SKMFQCKV 1089 G PVL+R A+ R V V+ FP R+ T T+SVC S S NRVAVIKAG+++MCSR+ CR V N+ S+A AG T S LPARCPHAEVV SST + +A+ L SA F+ AL +P GTFN +T AM RA+QAA+ GVP+LVG+G T+ F ++DG + NR+VIGEW HVKY++ G SKMFQCKV Sbjct: 575 GPVPVLDRSTQAKTRHVRASVFEFPARSPPVVTAATTTLSATPTSGTGATHSVCTSVSLNRVAVIKAGNKYMCSRDECRRVGNVQTSAAAAGVTGSPLPARCPHAEVVLEAERSSTPMPKADPLFSAGEFREALTTVPPGTFNKSTTRAMHTRADQAAQAGVPVLVGLGSTRCFEIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 782
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: D8LKG9_ECTSI (CxC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG9_ECTSI) HSP 1 Score: 142 bits (359), Expect = 1.030e-32 Identity = 82/167 (49.10%), Postives = 105/167 (62.87%), Query Frame = 1 Query: 619 TTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVENLSSAGA--GDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEA-FQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYE----ESGSKMFQCKVGEG 1098 TT+SVC + +Q RV+V+KA + FMCSR CR VE L +A GDTNSAL RC HA+VV +SS I A L+ + F+ ALA +P GTFN AM+ R +A +EGVP+LV + +T +FAVRDG F R+VIG WGHVK + MFQCK +G Sbjct: 297 TTFSVCTALNQLRVSVVKANNVFMCSRGECRKVEQLRAAAGRQGDTNSALADRCQHADVVRKAEVSSQSIPTATACLNGDGEFENALASVPPGTFNEKMVRAMQQRYARAKEEGVPVLVRLAETAWFAVRDGVTFQRNVIGGWGHVKTRSDTTDGSGHMFQCKDTDG 463
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5KLI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI9_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.530e-32 Identity = 69/120 (57.50%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 733 AGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEESG-SKMFQCKV 1089 A G T S LPARCP EVV SST + +A+ L SA F+ AL +P GTFN +T AM RA+QAAKEGVP+LVG+G T+ F ++DG + NR+VIGEW HVKY++ G SKMFQCKV Sbjct: 10 AATGVTGSPLPARCPPVEVVLEVERSSTPMPKADPLFSAGEFREALTTVPPGTFNESTTRAMHTRADQAAKEGVPVLVGLGSTRCFGIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 129
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5KZ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE) HSP 1 Score: 131 bits (330), Expect = 2.670e-31 Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 1 Query: 826 QAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEESGSKMFQCKVGEG 1098 +A+ LLSA F+ AL K+PAGTFN T +MRARA+QAAKEG+PLLV +G+TKYFAVRDG KFNR+VIGEWGHVKY++ GSK+FQCK G Sbjct: 5 KADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKASNG 95
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5L2J5_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J5_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 1.130e-6 Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 3 Query: 1458 LLFAAVSVFSLWPFMKANNGNPCGDSMSRKHTGRCVHAAIVAV 1586 +L AV+ L +K NNGNPC DS SRKHTGRCVHA IVAV Sbjct: 5 MLLVAVAFCFLMALVKGNNGNPCSDSTSRKHTGRCVHAGIVAV 47 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig15560.3901.1 >prot_L-elsbetiae_contig15560.3901.1 ID=prot_L-elsbetiae_contig15560.3901.1|Name=mRNA_L-elsbetiae_contig15560.3901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=344bp MIPGSQTAAGSGGGGGKRAAVEVLPHENRSPSPGHESNKQPRTAGRGISAback to top mRNA from alignment at L-elsbetiae_contig15560:1321..3765+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig15560.3901.1 ID=mRNA_L-elsbetiae_contig15560.3901.1|Name=mRNA_L-elsbetiae_contig15560.3901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2445bp|location=Sequence derived from alignment at L-elsbetiae_contig15560:1321..3765+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig15560:1321..3765+ >mRNA_L-elsbetiae_contig15560.3901.1 ID=mRNA_L-elsbetiae_contig15560.3901.1|Name=mRNA_L-elsbetiae_contig15560.3901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2064bp|location=Sequence derived from alignment at L-elsbetiae_contig15560:1321..3765+ (Laminarionema elsbetiae ELsaHSoW15)back to top |