mRNA_L-elsbetiae_contig10.39.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10.39.1
Unique NamemRNA_L-elsbetiae_contig10.39.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: A0A7T8G5K4_SCYLO (Photosystem II reaction center protein L n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A7T8G5K4_SCYLO)

HSP 1 Score: 137 bits (346), Expect = 6.180e-40
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:  214 LACSSWFSSSNDILFRCNYINAIYSTIGGY*MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 420
            +ACSSWFS SN+ILFRCNYINAIYSTIGGY MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN
Sbjct:    1 MACSSWFSCSNNILFRCNYINAIYSTIGGYSMTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 69
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BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: A0A1L1YA62_9FLOR (Photosystem II reaction center protein L n=6 Tax=Florideophyceae TaxID=2806 RepID=A0A1L1YA62_9FLOR)

HSP 1 Score: 94.0 bits (232), Expect = 1.300e-22
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:  214 LACSSWFSSSNDILFRCNYINAIYSTIG-GY*MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 420
            +A  +WFS S  I FRC YI AIYS IG  + M+GPNPNK+ VE++RTSL+WGLLL  VLAVLFSSYFFN
Sbjct:    1 MASYTWFSYSYYIFFRCYYIYAIYSKIGDNFIMSGPNPNKEPVELNRTSLFWGLLLILVLAVLFSSYFFN 70
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BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: A0A0S0GJY0_COSCS (Cytochrome b559 subunit beta n=68 Tax=Stramenopiles TaxID=33634 RepID=A0A0S0GJY0_COSCS)

HSP 1 Score: 90.5 bits (223), Expect = 1.540e-21
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 2 
Query:  164 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 292
            MTRNTNQPVAYPIFTFRWLA+HGLAVPTIFF+GAITSMQFIQR
Sbjct:    1 MTRNTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 43
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BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: A0A8K1YUB7_9FLOR (Photosystem II protein L n=2 Tax=Kumanoa TaxID=644269 RepID=A0A8K1YUB7_9FLOR)

HSP 1 Score: 84.7 bits (208), Expect = 5.510e-19
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:  226 SWFSSSNDILFRCNYINAIYSTIG-GY*MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 420
            +WFS S +      YI AIY+ +G  Y M+GPNPNK  VE++RTSL+WGLLL FVLAVLFSSYFFN
Sbjct:    5 TWFSYSYNFFLGSYYIYAIYTKVGENYNMSGPNPNKVPVELNRTSLFWGLLLIFVLAVLFSSYFFN 70
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BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: A0A3R5UAF7_9STRA (Cytochrome b559 subunit beta n=2 Tax=Eustigmatales TaxID=425074 RepID=A0A3R5UAF7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.160e-19
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 2 
Query:  164 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 292
            M R+TNQPV YPIFTFRWLA+HGLAVPTIFFLG ITSMQFIQR
Sbjct:    1 MIRSTNQPVVYPIFTFRWLAVHGLAVPTIFFLGGITSMQFIQR 43
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BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: A0A3R5TZL4_9STRA (Cytochrome b559 subunit beta n=1 Tax=Characiopsis acuta TaxID=2040456 RepID=A0A3R5TZL4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.640e-18
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 2 
Query:  164 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 292
            M R TNQPV YPIFTFRWLA+HGLA+PT+FFLGAIT+MQFIQR
Sbjct:    1 MIRGTNQPVVYPIFTFRWLAVHGLAIPTVFFLGAITAMQFIQR 43
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BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: A0A1C9CCM0_9RHOD (Cytochrome b559 subunit beta n=2 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCM0_9RHOD)

HSP 1 Score: 82.8 bits (203), Expect = 1.670e-18
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 2 
Query:  164 MTRN-TNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 292
            MTRN TNQP+ YPIFTFRWLA+HGL VPT+FFLGAITSMQFIQR
Sbjct:    1 MTRNNTNQPITYPIFTFRWLAIHGLGVPTVFFLGAITSMQFIQR 44
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BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: PSBF_PHATC (Cytochrome b559 subunit beta n=81 Tax=cellular organisms TaxID=131567 RepID=PSBF_PHATC)

HSP 1 Score: 82.4 bits (202), Expect = 2.320e-18
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 2 
Query:  164 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 292
            M +N NQPVAYPIFTFRWLA+HGLA+PT+FFLG IT+MQFIQR
Sbjct:    1 MAKNINQPVAYPIFTFRWLAIHGLAIPTVFFLGGITAMQFIQR 43
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BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: PSBF_GRATL (Cytochrome b559 subunit beta n=77 Tax=Rhodophyta TaxID=2763 RepID=PSBF_GRATL)

HSP 1 Score: 82.0 bits (201), Expect = 3.350e-18
Identity = 36/44 (81.82%), Postives = 43/44 (97.73%), Query Frame = 2 
Query:  164 MTR-NTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 292
            MTR N+NQP++YPIFTFRWLA+HG+A+PT+FFLGAITSMQFIQR
Sbjct:    1 MTRGNSNQPISYPIFTFRWLAIHGIAIPTVFFLGAITSMQFIQR 44
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BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: PSBF_NEOYE (Cytochrome b559 subunit beta n=17 Tax=Eukaryota TaxID=2759 RepID=PSBF_NEOYE)

HSP 1 Score: 81.6 bits (200), Expect = 4.740e-18
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  173 NTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 292
            N NQPV+YPIFTFRWLA+HGLA+PT+FFLGAITSMQFIQR
Sbjct:    5 NANQPVSYPIFTFRWLAIHGLAIPTVFFLGAITSMQFIQR 44
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7T8G5K4_SCYLO6.180e-4094.20Photosystem II reaction center protein L n=10 Tax=... [more]
A0A1L1YA62_9FLOR1.300e-2267.14Photosystem II reaction center protein L n=6 Tax=F... [more]
A0A0S0GJY0_COSCS1.540e-2195.35Cytochrome b559 subunit beta n=68 Tax=Stramenopile... [more]
A0A8K1YUB7_9FLOR5.510e-1963.64Photosystem II protein L n=2 Tax=Kumanoa TaxID=644... [more]
A0A3R5UAF7_9STRA8.160e-1988.37Cytochrome b559 subunit beta n=2 Tax=Eustigmatales... [more]
A0A3R5TZL4_9STRA1.640e-1883.72Cytochrome b559 subunit beta n=1 Tax=Characiopsis ... [more]
A0A1C9CCM0_9RHOD1.670e-1886.36Cytochrome b559 subunit beta n=2 Tax=Rhodophyta Ta... [more]
PSBF_PHATC2.320e-1881.40Cytochrome b559 subunit beta n=81 Tax=cellular org... [more]
PSBF_GRATL3.350e-1881.82Cytochrome b559 subunit beta n=77 Tax=Rhodophyta T... [more]
PSBF_NEOYE4.740e-1887.50Cytochrome b559 subunit beta n=17 Tax=Eukaryota Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:74355..74799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue3.6e-16
Seed eggNOG ortholog2880.D1J7D4
Preferred namepsbF
KEGG koko:K02708
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthetic electron transport chain
EggNOG OGs2E87T@1,2SEUE@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size445
Cds size132
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.39.1prot_L-elsbetiae_contig10.39.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10 74518..74649 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815233.10815-UTR-L-elsbetiae_contig10:74354..745171622815233.10815-UTR-L-elsbetiae_contig10:74354..74517Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 74355..74517 +
1691682784.4714158-UTR-L-elsbetiae_contig10:74354..745171691682784.4714158-UTR-L-elsbetiae_contig10:74354..74517Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 74355..74517 +
1622815233.1327713-UTR-L-elsbetiae_contig10:74649..747991622815233.1327713-UTR-L-elsbetiae_contig10:74649..74799Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 74650..74799 +
1691682784.494215-UTR-L-elsbetiae_contig10:74649..747991691682784.494215-UTR-L-elsbetiae_contig10:74649..74799Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 74650..74799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815233.1198711-CDS-L-elsbetiae_contig10:74517..746491622815233.1198711-CDS-L-elsbetiae_contig10:74517..74649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 74518..74649 +
1691682784.4841518-CDS-L-elsbetiae_contig10:74517..746491691682784.4841518-CDS-L-elsbetiae_contig10:74517..74649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 74518..74649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10.39.1

>prot_L-elsbetiae_contig10.39.1 ID=prot_L-elsbetiae_contig10.39.1|Name=mRNA_L-elsbetiae_contig10.39.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=44bp
MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR*
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mRNA from alignment at L-elsbetiae_contig10:74355..74799+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10.39.1 ID=mRNA_L-elsbetiae_contig10.39.1|Name=mRNA_L-elsbetiae_contig10.39.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=445bp|location=Sequence derived from alignment at L-elsbetiae_contig10:74355..74799+ (Laminarionema elsbetiae ELsaHSoW15)
TATTAAATATCTCATTAAAGAAAGCTACGAGTAGGTTGATCTTCGTTGCT
ATACTGTTAAATGTTTATGAACAGTTACTTAGGTTACTAAATTTATTGTT
TATAATAAATTTAAGAATAAGTTAAAATTACAAAATATTATATAAATATA
AGATAGGAAAAATATGACTAGAAATACAAATCAACCCGTAGCTTACCCTA
TTTTTACTTTTCGTTGGCTTGCTCTTCATGGTTTAGCAGTTCCAACGATA
TTCTTTTTAGGTGCAATTACATCAATGCAATTTATTCAACGATAGGAGGT
TATTAAATGACGGGTCCAAATCCTAATAAGCAAGAAGTTGAAATAAGTCG
TACATCTTTATACTGGGGTCTATTATTATTTTTTGTATTAGCAGTACTTT
TCTCTAGTTACTTCTTTAATTAATTAAAGAGAATTTTGATTCTTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10:74355..74799+

>mRNA_L-elsbetiae_contig10.39.1 ID=mRNA_L-elsbetiae_contig10.39.1|Name=mRNA_L-elsbetiae_contig10.39.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig10:74355..74799+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTAGAAATACAAATCAACCCGTAGCTTACCCTATTTTTACTTTTCG
TTGGCTTGCTCTTCATGGTTTAGCAGTTCCAACGATATTCTTTTTAGGTG
CAATTACATCAATGCAATTTATTCAACGATAGATGACTAGAAATACAAAT
CAACCCGTAGCTTACCCTATTTTTACTTTTCGTTGGCTTGCTCTTCATGG
TTTAGCAGTTCCAACGATATTCTTTTTAGGTGCAATTACATCAATGCAAT
TTATTCAACGATAG
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