prot_L-elsbetiae_contig1554.3896.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1554.3896.1
Unique Nameprot_L-elsbetiae_contig1554.3896.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length558
Homology
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BLAST of mRNA_L-elsbetiae_contig1554.3896.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 1.280e-94
Identity = 168/247 (68.02%), Postives = 187/247 (75.71%), Query Frame = 0 
Query:    1 MRDLGELFEEAPSVESYPEYHVKVKNIMDLNTIRKKVVQRKYSAAEGLLADVALMYSNAQAIKHEQATKDGEQLLAVARTTIAKLQREAREGTFRKDKLRQQQQQRGA---------------CAKCNKLRRDPSGXXXXXXXXXXXXXXXXXXXXXKTCTKKERYWFCESCVTGTPGAFAGRGIGVCRRDGKWKMATVRGYEPLSGKHEVLYRGDLPWEFLSLGDPRNHIRYCQPVPPASLTTSPE 232
            MRDLGELFEEAPS +SYPEYH KVKNIMDLNTIR KV+ R+YS+ EGLL+DVALMYSNAQ I+HEQATKDG+QLLA+A+ T+ +L+RE +EGT RKD+LRQQQ   G+               CAKC KLRRDP                         CTKKERYWFCESCVT +P AF GRGIGVCR+DGKWKMATVRGYEPLSGKHEVLYRGD+PWEFLSLGDPRNHIRYCQPVPPASL +  E
Sbjct: 2168 MRDLGELFEEAPSEDSYPEYHAKVKNIMDLNTIRTKVLDREYSSVEGLLSDVALMYSNAQVIRHEQATKDGKQLLALAQATVERLRRERQEGTPRKDRLRQQQSASGSEQPAAAVFGTGLRINCAKCTKLRRDPP-------------LAATGGRPSMACTKKERYWFCESCVTESPDAFTGRGIGVCRQDGKWKMATVRGYEPLSGKHEVLYRGDIPWEFLSLGDPRNHIRYCQPVPPASLNSVQE 2401
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BLAST of mRNA_L-elsbetiae_contig1554.3896.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 4.200e-94
Identity = 193/306 (63.07%), Postives = 220/306 (71.90%), Query Frame = 0 
Query:    1 MRDLGELFEEAPSVESYPEYHVKVKNIMDLNTIRKKVVQRKYSAAEGLLADVALMYSNAQAIKHEQATKDGEQLLAVARTTIAKLQREAREGTFRKDKLRQQQQQRGACAKCNKLRRDPSGXXXXXXXXXXXXXXXXXXXXXKTCTKKERYWFCESCVTGTPGAFAGRGIGVCRRDGKWKMATVRGYEPLSGKHEVLYRGDLPWEFLSLGDPRNHIRYCQPVPPASLTTSPEKPRXXXXXXXXXXXENDA--TADKSLR--------PLSCAPQ---SVRDRREGGGSGRETEAPFPGSAMNGGAG 293
            MRDLGELFEEAPS +SYPEYH KVKNIMDLNT+R KV+ R+YS+ EGLL+DVALMYSNAQ I+HEQATKDG+QLL +A+TT+ +L+RE +EGT RKD+LRQQQ   G+  +C KLRRDP                       K CTKKERYWFCESCVT +P +F GRGIGVCRRDGKWKMATVRGYEPLSGKHEVLYRGD+PWEFLSLGDP NHIRYCQPVPPASL +  E   XXXXXXXXXXX  +   TA++ L         PLS  P     V +R  GG +  E   P   +A  GGAG
Sbjct: 1714 MRDLGELFEEAPSEDSYPEYHAKVKNIMDLNTVRTKVLDREYSSVEGLLSDVALMYSNAQVIRHEQATKDGKQLLDLAQTTVERLRRERKEGTPRKDRLRQQQSASGS--ECTKLRRDPP-------------PAATGGRPSKACTKKERYWFCESCVTESPDSFTGRGIGVCRRDGKWKMATVRGYEPLSGKHEVLYRGDIPWEFLSLGDPCNHIRYCQPVPPASLNSVQEMQXXXXXXXXXXXXXXEVGDTANEVLNVMDVDPPSPLSAHPHLPGGVNERDRGGSTPPEKGVPLE-AAGGGGAG 2003
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BLAST of mRNA_L-elsbetiae_contig1554.3896.1 vs. uniprot
Match: A0A1S3IY77_LINUN (protein polybromo-1-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IY77_LINUN)

HSP 1 Score: 57.4 bits (137), Expect = 7.330e-5
Identity = 30/86 (34.88%), Postives = 52/86 (60.47%), Query Frame = 0 
Query:    2 RDLGELFEEAPSVESYPEYHVKVKNIMDLNTIRKKVVQRKYSAAEGLLADVALMYSNAQAIKHEQAT--KDGEQLLAVARTTIAKL 85
            R L ++F E PS + YP+Y+  +   +D+NTI+ K+++ KY+  + L+AD+ LM+SNA+    E +   +D + L  V +  I  L
Sbjct:  262 RSLIDIFIELPSKKEYPDYYQVISEPIDMNTIKTKIMEEKYTTEQALIADLKLMFSNARHYNEESSLVYQDSQTLERVLKQKIRNL 347
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BLAST of mRNA_L-elsbetiae_contig1554.3896.1 vs. uniprot
Match: A0A1S3KHJ7_LINUN (protein polybromo-1 isoform X1 n=6 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KHJ7_LINUN)

HSP 1 Score: 57.4 bits (137), Expect = 7.820e-5
Identity = 30/86 (34.88%), Postives = 52/86 (60.47%), Query Frame = 0 
Query:    2 RDLGELFEEAPSVESYPEYHVKVKNIMDLNTIRKKVVQRKYSAAEGLLADVALMYSNAQAIKHEQAT--KDGEQLLAVARTTIAKL 85
            R L ++F E PS + YP+Y+  +   +D+NTI+ K+++ KY+  + L+AD+ LM+SNA+    E +   +D + L  V +  I  L
Sbjct:  657 RSLIDIFIELPSKKEYPDYYQVISEPIDMNTIKTKIMEEKYTTEQALIADLKLMFSNARHYNEESSLVYQDSQTLERVLKQKIRNL 742
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1554.3896.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LHH7_9PHAE1.280e-9468.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV42_ECTSI4.200e-9463.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1S3IY77_LINUN7.330e-534.88protein polybromo-1-like n=1 Tax=Lingula unguis Ta... [more]
A0A1S3KHJ7_LINUN7.820e-534.88protein polybromo-1 isoform X1 n=6 Tax=Lingula ung... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 82..102
IPR001487BromodomainSMARTSM00297bromo_6coord: 1..87
e-value: 0.001
score: 20.5
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 3..65
e-value: 3.0E-11
score: 43.2
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 1..70
score: 13.161
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 1..109
e-value: 1.0E-17
score: 66.0
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 5..87
IPR027180Chromatin structure-remodeling complex subunit RSC1/RSC2/RSC4PANTHERPTHR16062:SF19POLYBROMOcoord: 2..249
IPR037382Remodelling complex subunit Rsc/polybromoPANTHERPTHR16062SWI/SNF-RELATEDcoord: 2..249

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1554contigL-elsbetiae_contig1554:8873..13647 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1554.3896.1mRNA_L-elsbetiae_contig1554.3896.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1554 8873..18399 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1554.3896.1 ID=prot_L-elsbetiae_contig1554.3896.1|Name=mRNA_L-elsbetiae_contig1554.3896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=558bp
MRDLGELFEEAPSVESYPEYHVKVKNIMDLNTIRKKVVQRKYSAAEGLLA
DVALMYSNAQAIKHEQATKDGEQLLAVARTTIAKLQREAREGTFRKDKLR
QQQQQRGACAKCNKLRRDPSGGAGAGGGGRSSSSSSSSSSSSKTCTKKER
YWFCESCVTGTPGAFAGRGIGVCRRDGKWKMATVRGYEPLSGKHEVLYRG
DLPWEFLSLGDPRNHIRYCQPVPPASLTTSPEKPRRQQQQQQQAQEENDA
TADKSLRPLSCAPQSVRDRREGGGSGRETEAPFPGSAMNGGAGAGQREDG
GGSIDVGGSGGGVKANDSGRSAVEPAASAKPVDGEGARRLATGEVSTPAG
EGVRSAAKRKREGGEEEEEEGRAEATSKRKRECGGVDRVAATAAAAAAPS
DSIGAAGSDRVEADRDSEKTVPCAVKNVSSPDGDVRENQPRLGVTAAAAA
ATAATSAAGADAEAAPAVAAPPGGGGSRSSSAAAGSAGATAPPSPSSRDV
ADNTPIPADDRRGPVVDLANGDTGVREVGAPRHRPGSSALPISLEEAGAG
TGRGKGAH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf
IPR027180RSC1/2/4
IPR037382Rsc/polybromo