mRNA_L-elsbetiae_contig1553.3889.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1553.3889.1 vs. uniprot
Match: A0A6H5JJD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD0_9PHAE) HSP 1 Score: 1124 bits (2907), Expect = 0.000e+0 Identity = 750/1208 (62.09%), Postives = 806/1208 (66.72%), Query Frame = 1 Query: 136 AGLEPGMLSPLAQLTVINGLVERDDLYYFQVLTEAWQSTRVRVSIEDCTPRTAVIAAFGAEPTPSRHELLAHAMMDLSGNGTCGVDLISRPSYSRDGVWHFAVVGGSPLHGDRYFAGPPDTLAFEAAVIAESAVYPTLDLGVAAPGACLRKVAIPPVVVPTITGLPGSSSSRHNGG-GKSWRGDFLPTLGRFPAGGAKDRAQP---GNGDPEQKEEDENEKLRPSAAAAAL--TPSWLGAFTVSAYDEVVAVPFEVAALVDGEEAXXXXXXXXXXXXXXXXXXXXXXXXQRRALGEGGGKAGLPARTGEG------------------WLDRRSKDRRRRRALGGLTRGVAGLD---GR---DQEG-GVAGEXXXXXXXXXXXXXXXXXXXXXXXCEVTVCAXXXXXXXGREXXXXXXXXXXQGGDGD-----------GRQSVCRSVVVKRKGAAVSGVLELPDRPQTGRWYLTARAACDDDTGTAGRXXXXXXXXXXXXXTLGAAGSPEKGEEEDEDGAKEEGQGRVGGRRVGASLTGAGQ-------------------GQEQEKKNIYSGSGWGLEVMSLQRDWAHVEWSADFLVPDVGGGASGADWGGE-------AEACLSSAGGAEAFVFRAAAVAEACPRGAVGVGGVDLAPVSSAKTGPAPGDGQEEAEAEALHRFSCVGAELPMLMRRDGATRVHEGQPQALSNFVRGEGGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGGAPRWLWRGPGPPSLWYALEMSGREVGASMEVRLSVNSSAPLAAAPQGWGGA---AGGSPTAWHMGSDVYPAVAGGDGXXXXXXXXXXXXXFPYPSLAVEAASSMNLSVAMRVGALPVIDPNGTARDGTVVLWTADALSEPGEASERPLPYGDDVGXXXXXAXXXXXXXXGAADADDLPPWWSTTFTWNLTHPPPLHPAAVGGGAGLGRGTAATTLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDKGGEGREKGGLGGGGE--GELLWTLGVAPEVTFRYCDEDVCPVGRGECRAARGGSGDDYVTVSKCYCFYGYGGEACGQRVVSYVSMLWQFCLLVLSNLAVVPAVRLSLRLGAATGAAPAVVLGLNGAASAFYHMCDLELTCAWGMLSFHSLQALDFFFSFFSVAALVLHLCPMPWDEPLV---PRSTLSS 3531 AGLEP MLSPLAQLT+I+ VERDD++YFQVLTEAWQSTRVRVSIEDCTPRTAVIAAFGAEPTPSRHELLAHAM DL+GNGTCGVD+I+RPSYSRDGVWHFAVVGGSPL GDRYFAGPPDTLAF+AAVIA+SAVYPTLD GVAA G CLRKVA+PPVVVPTITG PGSS SR GG G+ RG FLPTLGRFPAGGA ++ + G GD E+ E R +AAA AL +PSWLGAFT+SAYDE V +PFEVAA+VDG XXXXXXXXXX RALG G T G LT AG GR DQ G G GE CEVTVCA G Q DGD G+Q VCRSVVV +GAAVSG L+LPDRPQTGRWYLTARAAC+ GTAG T+GA +DE G TG G GQE E+KNIYSG+GWGLEVMSLQRDWAHVEWSADFLVPD G G A GG+ EAC S+AGG +AFVFRAAA EACPRGAVGVGGVDL PV++A GDG A E+ HRFSCVGAELPMLMRRDGA R+HEGQP+ALSNFVR EGGAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AP WLW+GPGPPSLWYALEMSGREVGASM++RLSVNSSAPL A A GSP+AWHMG + + +GGD S+ VE ASSMNLSVAMRVGALPV+DPNGTAR+GTVVLWTADALSEPGEA++RP XX XXXXXXXX DLP WWSTTFTWNLTHPPPLHPAAVGGGAGLGRGTAATTLF + E + G GGGG+ G LWTLGVAPEVTFRYCDEDVCPVGRGECRAARGGSGDDYVTVSKCYCFYGYGGEACGQRVVSYVS+LWQFCLLVLSNLAVVPAVR++LRLG ATGAAPAVVLGLNGAASAFYHMCDLELTCA GMLSFHSLQALDFFFSFFSVAALVLHLCPMPWDEPLV P S+L+S Sbjct: 36 AGLEPSMLSPLAQLTLIDAQVERDDIHYFQVLTEAWQSTRVRVSIEDCTPRTAVIAAFGAEPTPSRHELLAHAMPDLAGNGTCGVDVITRPSYSRDGVWHFAVVGGSPLRGDRYFAGPPDTLAFQAAVIADSAVYPTLDRGVAASGDCLRKVAVPPVVVPTITGPPGSSVSRRGGGXGQGSRGSFLPTLGRFPAGGAAEKTEGKDRGGGDGEE------EDARHAAAATALLLSPSWLGAFTLSAYDESVTIPFEVAAIVDGGSEADGXXXXXXXXXXGTGQGLVG-----RALGANGTADVKLLTTDYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTERAAGYGQGKGRAAGDQSGAGDGGEEKEETHQGREEERSLDNDDGG--CEVTVCAAAARIVLG---------IGEQDDDGDAEVPQEDSSVGGQQRVCRSVVVGGQGAAVSGTLDLPDRPQTGRWYLTARAACEAAPGTAGHKQRSLRRS-----TVGADVPTTSAASQDE----------------GVPGTGGGVPSXXXXXXXXXXXXXXXXVGQEVEEKNIYSGTGWGLEVMSLQRDWAHVEWSADFLVPDGGDGGGDARRGGDDGKGEGGREACTSAAGGKDAFVFRAAAFTEACPRGAVGVGGVDLRPVTAAAEAGV-GDGAAAAARES-HRFSCVGAELPMLMRRDGAARIHEGQPRALSNFVRDEGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------APSWLWQGPGPPSLWYALEMSGREVGASMQIRLSVNSSAPLTTAAXXXXXXXXXAHGSPSAWHMGPR-FSSRSGGDAGGGDGGAPVVQ------SVPVEDASSMNLSVAMRVGALPVVDPNGTAREGTVVLWTADALSEPGEANDRPXXX--------XXXXXXXXXXXXXXXXXDLP-WWSTTFTWNLTHPPPLHPAAVGGGAGLGRGTAATTLFVVVSGETEAEASGRAKRYEGVGPPGGRDGMIRR---RAAEREVEQGEGGGGDEVGVSLWTLGVAPEVTFRYCDEDVCPVGRGECRAARGGSGDDYVTVSKCYCFYGYGGEACGQRVVSYVSLLWQFCLLVLSNLAVVPAVRVALRLGLATGAAPAVVLGLNGAASAFYHMCDLELTCAGGMLSFHSLQALDFFFSFFSVAALVLHLCPMPWDEPLVCSPPPSSLAS 1168
BLAST of mRNA_L-elsbetiae_contig1553.3889.1 vs. uniprot
Match: D8LS70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS70_ECTSI) HSP 1 Score: 712 bits (1837), Expect = 1.280e-233 Identity = 431/630 (68.41%), Postives = 455/630 (72.22%), Query Frame = 1 Query: 1696 MSLQRDWAHVEWSADFLVPDVGGGASGADWGGE-------AEACLSSAGGAEAFVFRAAAVAEACPRGAVGVGGVDLAPVSSA-KTGPAPGDGQEEAEAEALHRFSCVGAELPMLMRRDGATRVHEGQPQALSNFVRGEGGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGGAPRWLWRGPGPPSLWYALEMSGREVGASMEVRLSVNSSAPL--AAAPQGWGGAAGGSPTAWHMGSDVY-PAV--AGGDGXXXXXXXXXXXXXFPYPSLAVEAASSMNLSVAMRVGALPVIDPNGTARDGTVVLWTADALSEPGEASERPLPYGDDVGXXXXXAXXXXXXXXGAADADDLPPWWSTTFTWNLTHPPPLHPAAVGGGAGLGRGTAATTLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDKGGEGREKGGLGGGGE--GELLWTLGVAPEVTFRYCDEDVCPVGRGECRAARGGSGDDYVTVSKCYCFYGYGGEACGQRVVSYVSMLWQFCLLVLSNLAVVPAVRLSLRLGAATGAAPAVVLGLNGAASAFYHMCDLELTCAWGMLSFHSLQALDFFFSFFSVAALVLHLCPMPWDEPLV---PRSTLSS 3531 MSLQRDWAHVEWSADFLVPDVG G A GG+ EAC S+AGG +AFVFRAAA EACPRGAVGVGGVDL PV++A + G G A A HRFSCVGAELPMLMRRDGA R+HEGQP+ALSNFVR EGGAAA XXXXXXXXXXXXXXXXX APRWLWRGPGPPSLWYALEMSGREVGASME+RLSVNSSAPL A +A GSP+AWHMG P+V AGG G S+ VE ASSMNLSVAMRVGALPV+DPNGTAR+GTVVLWTADALSEPGEAS+RP P DD AA A DLP WWSTTFTWNLTHPPPLHPAAVGGGAGLGRGTAATTLF + E + G GGGG+ G LWTLGVAPEVTFRYCDEDVCP+GRGECRAARGGSGDDYVTVSKCYCFYGYGGEACGQRVVSYVS+LWQFCLLVLSNLAVVPAVR++LRLG ATGAAPAVVLGLNGAASAFYHMCDLELTCA GMLSFHSLQALDFFFSFFSVAALVLHLCPMPWDEPLV P S L+S Sbjct: 1 MSLQRDWAHVEWSADFLVPDVGDGGGDARRGGDDGKGEGGREACTSAAGGEDAFVFRAAAFTEACPRGAVGVGGVDLRPVTAAAEAGFGEGAAATAAAATESHRFSCVGAELPMLMRRDGAARIHEGQPRALSNFVRDEGGAAAAVAGLSESGXXXXXXXXXXXXXXXXXAKQ-------------APRWLWRGPGPPSLWYALEMSGREVGASMEIRLSVNSSAPLMTTATAAAASLSAHGSPSAWHMGPRFSSPSVGDAGGGGGGAPVVQ----------SVPVENASSMNLSVAMRVGALPVVDPNGTAREGTVVLWTADALSEPGEASDRPPPPYDDSSD--------------AAGAADLP-WWSTTFTWNLTHPPPLHPAAVGGGAGLGRGTAATTLFVVVSGETEAEASGRAKRYGGVGSTGGRDGKLRR---RAAEREVEEGEGGGGDEVGVSLWTLGVAPEVTFRYCDEDVCPIGRGECRAARGGSGDDYVTVSKCYCFYGYGGEACGQRVVSYVSLLWQFCLLVLSNLAVVPAVRVALRLGLATGAAPAVVLGLNGAASAFYHMCDLELTCAGGMLSFHSLQALDFFFSFFSVAALVLHLCPMPWDEPLVRSPPPSLLAS 589
BLAST of mRNA_L-elsbetiae_contig1553.3889.1 vs. uniprot
Match: D8LS69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS69_ECTSI) HSP 1 Score: 335 bits (860), Expect = 1.380e-103 Identity = 177/226 (78.32%), Postives = 195/226 (86.28%), Query Frame = 1 Query: 43 ARARVGHLRVVVMMAFLLA-LVAVALADGTATAGLEPGMLSPLAQLTVINGLVERDDLYYFQVLTEAWQSTRVRVSIEDCTPRTAVIAAFGAEPTPSRHELLAHAMMDLSGNGTCGVDLISRPSYSRDGVWHFAVVGGSPLHGDRYFAGPPDTLAFEAAVIAESAVYPTLDLGVAAPGACLRKVAIPPVVVPTITGLPGSSSSRH-NGGGKSWRGDFLPTLGRFPA 714 +RAR LR ++ A L++ L+AV L AGLEP MLSPLAQLT+I+ VERDD+YYFQVLTEAWQSTRVRVSIEDCTPRTAVIAAFGAEPTPSRHELLAHAM D++GNGTCGVD+I+RPSYSRDGVWHFAVVGGSPL GDRYFAGP DTLAF+AAVIA+SAVYPTLD GVAA G CLRKVA+PPVVVPTITG PGSS+SR GGG+ RG FLPTLGRFPA Sbjct: 4 SRARRCRLRSALLRACLVSSLLAVELTLADEAAGLEPSMLSPLAQLTLIDAQVERDDMYYFQVLTEAWQSTRVRVSIEDCTPRTAVIAAFGAEPTPSRHELLAHAMPDVAGNGTCGVDVITRPSYSRDGVWHFAVVGGSPLRGDRYFAGPADTLAFQAAVIADSAVYPTLDRGVAASGDCLRKVAVPPVVVPTITGPPGSSASRRVGGGGQGSRGSFLPTLGRFPA 229 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1553.3889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1553.3889.1 >prot_L-elsbetiae_contig1553.3889.1 ID=prot_L-elsbetiae_contig1553.3889.1|Name=mRNA_L-elsbetiae_contig1553.3889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1168bp MGLLEARARVGHLRVVVMMAFLLALVAVALADGTATAGLEPGMLSPLAQLback to top mRNA from alignment at L-elsbetiae_contig1553:8610..19712+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1553.3889.1 ID=mRNA_L-elsbetiae_contig1553.3889.1|Name=mRNA_L-elsbetiae_contig1553.3889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11103bp|location=Sequence derived from alignment at L-elsbetiae_contig1553:8610..19712+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1553:8610..19712+ >mRNA_L-elsbetiae_contig1553.3889.1 ID=mRNA_L-elsbetiae_contig1553.3889.1|Name=mRNA_L-elsbetiae_contig1553.3889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7008bp|location=Sequence derived from alignment at L-elsbetiae_contig1553:8610..19712+ (Laminarionema elsbetiae ELsaHSoW15)back to top |