mRNA_L-elsbetiae_contig15521.3885.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15521.3885.1
Unique NamemRNA_L-elsbetiae_contig15521.3885.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15521.3885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15521contigL-elsbetiae_contig15521:2686..3401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size718
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.7589488-CDS-L-elsbetiae_contig15521:2685..30901622815634.7589488-CDS-L-elsbetiae_contig15521:2685..3090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15521 2686..3090 +
1691683004.6791987-CDS-L-elsbetiae_contig15521:2685..30901691683004.6791987-CDS-L-elsbetiae_contig15521:2685..3090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15521 2686..3090 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.7706022-UTR-L-elsbetiae_contig15521:3090..34011622815634.7706022-UTR-L-elsbetiae_contig15521:3090..3401Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15521 3091..3401 +
1691683004.6925564-UTR-L-elsbetiae_contig15521:3090..34011691683004.6925564-UTR-L-elsbetiae_contig15521:3090..3401Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15521 3091..3401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15521.3885.1prot_L-elsbetiae_contig15521.3885.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15521 2686..3090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15521.3885.1

>prot_L-elsbetiae_contig15521.3885.1 ID=prot_L-elsbetiae_contig15521.3885.1|Name=mRNA_L-elsbetiae_contig15521.3885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
CTRGAHKAQNKRSDTYSLEPSAPLSTLCEVKNKSGQANITNRGGYAPWLY
CDSPNNAGVFRAGFSPARPPIFLHSPPHPSYCTHDIVRGKGHRTINKSKV
QTNTHKNPDKRLIAPPAVLQDSTAVGRCSHKNQC*
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mRNA from alignment at L-elsbetiae_contig15521:2686..3401+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15521.3885.1 ID=mRNA_L-elsbetiae_contig15521.3885.1|Name=mRNA_L-elsbetiae_contig15521.3885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=716bp|location=Sequence derived from alignment at L-elsbetiae_contig15521:2686..3401+ (Laminarionema elsbetiae ELsaHSoW15)
TGCACCCGAGGGGCCCACAAAGCACAAAACAAAAGATCAGATACATATAG
TCTGGAGCCTTCCGCTCCCCTCTCCACGCTATGCGAGGTGAAAAACAAAA
GTGGACAAGCCAATATCACCAACCGCGGGGGATACGCCCCCTGGTTATAT
TGTGATTCCCCAAACAATGCCGGGGTGTTCCGCGCCGGGTTCTCGCCGGC
CAGGCCACCGATCTTTCTACATAGTCCTCCCCATCCCTCATACTGCACCC
ATGATATAGTAAGAGGGAAAGGACATCGGACAATCAACAAGTCCAAAGTA
CAAACAAACACACATAAAAACCCAGACAAACGCCTCATCGCTCCCCCGGC
GGTGTTGCAAGATAGTACAGCAGTGGGGAGGTGCTCCCATAAAAACCAGT
GTTAGACCACGAAATTTTGCATACATGTTCTTGAAAGGCATTCAATATCT
AAAACTCCCAAGAATGTTTTATTTTATTTTCGATTTTGTTGTCGAGATAT
CCTTGGTCGTGGTCAACCTATTTGACCGGAGGGGGGGGAGATTCCGGCTT
ATCTCGACAACAAAACAAGAAAGAACTCTTAGAGTTTTAGGTAGGGGCAA
CGGCCAAAATAAGGTTATGTGGTTCCGAACTTTGTCGTGCCTCACCTACT
AAGCCCAACTTCACATAAGAGTCTCGGAGGCTGTCCCATGGCCGCCATCA
AAGTAGGGCACGGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15521:2686..3401+

>mRNA_L-elsbetiae_contig15521.3885.1 ID=mRNA_L-elsbetiae_contig15521.3885.1|Name=mRNA_L-elsbetiae_contig15521.3885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig15521:2686..3401+ (Laminarionema elsbetiae ELsaHSoW15)
TGCACCCGAGGGGCCCACAAAGCACAAAACAAAAGATCAGATACATATAG
TCTGGAGCCTTCCGCTCCCCTCTCCACGCTATGCGAGGTGAAAAACAAAA
GTGGACAAGCCAATATCACCAACCGCGGGGGATACGCCCCCTGGTTATAT
TGTGATTCCCCAAACAATGCCGGGGTGTTCCGCGCCGGGTTCTCGCCGGC
CAGGCCACCGATCTTTCTACATAGTCCTCCCCATCCCTCATACTGCACCC
ATGATATAGTAAGAGGGAAAGGACATCGGACAATCAACAAGTCCAAAGTA
CAAACAAACACACATAAAAACCCAGACAAACGCCTCATCGCTCCCCCGGC
GGTGTTGCAAGATAGTACAGCAGTGGGGAGGTGCTCCCATAAAAACCAGT
GTTAGTGCACCCGAGGGGCCCACAAAGCACAAAACAAAAGATCAGATACA
TATAGTCTGGAGCCTTCCGCTCCCCTCTCCACGCTATGCGAGGTGAAAAA
CAAAAGTGGACAAGCCAATATCACCAACCGCGGGGGATACGCCCCCTGGT
TATATTGTGATTCCCCAAACAATGCCGGGGTGTTCCGCGCCGGGTTCTCG
CCGGCCAGGCCACCGATCTTTCTACATAGTCCTCCCCATCCCTCATACTG
CACCCATGATATAGTAAGAGGGAAAGGACATCGGACAATCAACAAGTCCA
AAGTACAAACAAACACACATAAAAACCCAGACAAACGCCTCATCGCTCCC
CCGGCGGTGTTGCAAGATAGTACAGCAGTGGGGAGGTGCTCCCATAAAAA
CCAGTGTTAG
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