mRNA_L-elsbetiae_contig1552.3883.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: D7G3Y4_ECTSI (Trafficking protein particle complex subunit 2, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y4_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 1.140e-24 Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1 Query: 115 MSVFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDESAHLNQFIVHSALDMVERKQWSTPAT 303 MSVFMIVGRNEPLYEADL S G +S++ GR+S +ESAHLNQFIVHSALDMVERKQWSTPAT Sbjct: 1 MSVFMIVGRNEPLYEADLGSGGGGNSSTAGRSS--EESAHLNQFIVHSALDMVERKQWSTPAT 61
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A6H5KJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU0_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 9.670e-24 Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1 Query: 115 MSVFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDESAHLNQFIVHSALDMVERKQWSTPAT 303 MSVFMIVGRNEPLYEADL S G +S++ GR+S +ESAHLNQFIVHSALDMVERKQWSTPAT Sbjct: 1 MSVFMIVGRNEPLYEADLGSGGGGNSSTAGRSS--EESAHLNQFIVHSALDMVERKQWSTPAT 61
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A4D9CUE9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUE9_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 6.860e-12 Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 1 Query: 115 MSVFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDE-SAHLNQFIVHSALDMVERKQWSTP 297 MS+F+IVG+NEP++EAD S+ S+ S + SA +E +A LNQFI+HS+LDM+E+ WS+P Sbjct: 1 MSLFVIVGKNEPIFEADFSTSSTSTGASPNKVSAAEEGNAQLNQFILHSSLDMMEKAMWSSP 62
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A835Z2S7_9STRA (Sedlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2S7_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 3.290e-11 Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1 Query: 121 VFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDESAHLNQFIVHSALDMVERKQW 288 VFMIVGRNEPLYEA+ G S+N RA A E++HL+QFI+HS+LD+VERKQW Sbjct: 4 VFMIVGRNEPLYEAEF---GLKSANPAQRA-AERENSHLSQFIIHSSLDLVERKQW 55
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A7S2SFI4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFI4_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.480e-8 Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1 Query: 91 AASGSTNAMSVFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDESAHLNQFIVHSALDMVERKQWSTPAT 303 AAS A +F+I+G+NEP+YE DL+ + ++AHLNQF+ HSALD+VE+ W+ +T Sbjct: 3 AASAGVPATLLFLIIGKNEPVYECDLA------------PGSQRDAAHLNQFVAHSALDLVEQAAWTNNST 61
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A397J2M1_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J2M1_9GLOM) HSP 1 Score: 57.8 bits (138), Expect = 1.180e-7 Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1 Query: 124 FMIVG-RNEPLYEADLSSVGNSSSNSGGRASAGDESAHLNQFIVHSALDMVERKQWSTPA 300 F+IVG ++ P+YE + + G S N DES HLNQFIVHSALD+VE QWST A Sbjct: 5 FVIVGTKDNPIYELEFGTSGLKSGNIDSNLKK-DESKHLNQFIVHSALDLVEEMQWSTNA 63
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A197JZ52_9FUNG (Sedlin n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A197JZ52_9FUNG) HSP 1 Score: 58.2 bits (139), Expect = 1.410e-7 Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1 Query: 79 SGTGAAS---GSTNAMSVFMIVGRNEPLYEADLSSVGNSSSNSGGRA---SAGDESAHLNQFIVHSALDMVERKQWST 294 SG G+ G+T MI ++ P+YEA+ +V + S+SGG + +E HLNQFI HSALDMVE QWST Sbjct: 13 SGIGSGPLGYGNTPTCYFVMIGTKDNPIYEAEFPAVNTARSSSGGATIPEAKKEEFRHLNQFIAHSALDMVEDIQWST 90
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: K0TLI7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLI7_THAOC) HSP 1 Score: 57.0 bits (136), Expect = 2.260e-7 Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1 Query: 121 VFMIVGRNEPLYEADL-SSVGNSSSNSGGRASAGDESAHLNQFIVHSALDMVERKQWST 294 +F+IVG+NEPLYEA++ +S G SS S+GD S N F++HSALD+VE+ W+T Sbjct: 7 LFVIVGKNEPLYEAEIDTSTGIHSS------SSGDLSTRQNYFVLHSALDLVEKSAWTT 59
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A7S2FMM3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FMM3_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 2.320e-7 Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1 Query: 121 VFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDES-AHLNQFIVHSALDMVERKQWSTPAT 303 +FMIVG EPLY +LS A A DES +HLNQFIVHSALD+V+R ++T AT Sbjct: 56 LFMIVGSKEPLYSLELS------------AQAADESQSHLNQFIVHSALDLVDRMAYTTNAT 105
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A7S3PQB4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQB4_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 3.230e-7 Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1 Query: 121 VFMIVGRNEPLYEADLSSVGNSS------SNSGGRASAGDESAHLNQFIVHSALDMVERKQWST 294 VF IVG+++ +YE + SS G SS S+ A ESAHL QF++HSALDMVE + W T Sbjct: 5 VFAIVGKHDLVYETEFSSSGGSSVAVAAGSDPNVGAKTSSESAHLYQFVMHSALDMVEERMWET 68 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1552.3883.1 >prot_L-elsbetiae_contig1552.3883.1 ID=prot_L-elsbetiae_contig1552.3883.1|Name=mRNA_L-elsbetiae_contig1552.3883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp MSVFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDESAHLNQFIVHSALback to top mRNA from alignment at L-elsbetiae_contig1552:24011..24486+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1552.3883.1 ID=mRNA_L-elsbetiae_contig1552.3883.1|Name=mRNA_L-elsbetiae_contig1552.3883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=476bp|location=Sequence derived from alignment at L-elsbetiae_contig1552:24011..24486+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1552:24011..24486+ >mRNA_L-elsbetiae_contig1552.3883.1 ID=mRNA_L-elsbetiae_contig1552.3883.1|Name=mRNA_L-elsbetiae_contig1552.3883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig1552:24011..24486+ (Laminarionema elsbetiae ELsaHSoW15)back to top |