mRNA_L-elsbetiae_contig10358.388.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10358.388.1
Unique NamemRNA_L-elsbetiae_contig10358.388.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10358.388.1 vs. uniprot
Match: D7G235_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G235_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 1.880e-97
Identity = 179/283 (63.25%), Postives = 194/283 (68.55%), Query Frame = 2 
Query:    2 DSSLFEELKLLLRERVIAATGNGVRDAEAPKSRKRARKEEVCVQGERLQFTYRYRKTLPRYTVLSYVGDNVEEGPKHSSXXXXXXXXXXXXXAGSS-GK----SNLPVDTDNGPGFRHLPLSESTMLVWVYRFDKDDPYRPVPNQAALQFA-----PAAAKQHSPTAARGALDVEAIGRRSGAVEGAAIGVQGGPRDTGILAWLWGTGGGSDGXXXXXXXXXXXXGVRQHFIGSASWQGKPSTGRAAGGGRGEEEEDDIQRAIKLSLAMASGTRAGGVEESKG 820
            D+SLF+ELKLLLRERVI+ATGNG +DAEAPKSRKRARKEEVC+QGERLQFTYRYRKTLPRYTVLSY GD++E   + SS             AGSS GK    SN        P FRHLPLSEST+LVWVY FDKDDPYRPVPN+AALQFA     PAAA Q        ALDVEAIGRRSGA  GA + VQGGPRDTG+L WLWG GG   G            GVRQHFIGSASWQGK  + +     R E    DIQRAI LSLA+      GGVEESKG
Sbjct:   54 DASLFDELKLLLRERVISATGNGDKDAEAPKSRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSYTGDDIERANRGSSS------------AGSSKGKRCVGSNSXXXXXXXPAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQFASSTSTPAAADQE-------ALDVEAIGRRSGAGTGATVDVQGGPRDTGLLTWLWGVGGEGGGSAAGGVKG----GVRQHFIGSASWQGKSPSEQ-----RREXXXXDIQRAIALSLAVEPRAEGGGVEESKG 308
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BLAST of mRNA_L-elsbetiae_contig10358.388.1 vs. uniprot
Match: A0A836CBI6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.970e-13
Identity = 49/153 (32.03%), Postives = 77/153 (50.33%), Query Frame = 2 
Query:   11 LFEELKLLLRERVIA---ATGNGVR-DAEAPKS-------RKRARKEEVCVQGERLQFTYRYRKTLPRYTVLSYVGDNVEEGPKHSSXXXXXXXXXXXXXAGSSGKSNLPVDTDNGPGFRHLPLSESTMLVWVYRFDKDDPYRPVPNQAALQF 436
            L+EEL+ LL+++VI    AT + V  D E  KS       R++AR+ E CVQGE LQFT+R+R T P Y+++++                            ++ +          P +  LPL+E+T+L WV++FD  +PY P+P +    F
Sbjct:   59 LWEELQRLLKDQVITPYLATPSAVTGDEEEEKSTDAISTSRRKARRGEKCVQGEGLQFTFRFRPTKPVYSIITF------------------------NSVPAATQQQQTASKQAAPAYASLPLNEATLLAWVFKFDPANPYAPLPTETVEVF 187
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10358.388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G235_ECTSI1.880e-9763.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBI6_9STRA8.970e-1332.03Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10358contigL-elsbetiae_contig10358:2466..3796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size820
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10358.388.1prot_L-elsbetiae_contig10358.388.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10358 2531..3629 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815263.073691-UTR-L-elsbetiae_contig10358:2465..25301622815263.073691-UTR-L-elsbetiae_contig10358:2465..2530Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10358 2466..2530 +
1691682804.1309242-UTR-L-elsbetiae_contig10358:2465..25301691682804.1309242-UTR-L-elsbetiae_contig10358:2465..2530Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10358 2466..2530 +
1622815263.1051538-UTR-L-elsbetiae_contig10358:3629..37961622815263.1051538-UTR-L-elsbetiae_contig10358:3629..3796Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10358 3630..3796 +
1691682804.155812-UTR-L-elsbetiae_contig10358:3629..37961691682804.155812-UTR-L-elsbetiae_contig10358:3629..3796Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10358 3630..3796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815263.0840638-CDS-L-elsbetiae_contig10358:2530..26451622815263.0840638-CDS-L-elsbetiae_contig10358:2530..2645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10358 2531..2645 +
1691682804.1396613-CDS-L-elsbetiae_contig10358:2530..26451691682804.1396613-CDS-L-elsbetiae_contig10358:2530..2645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10358 2531..2645 +
1622815263.0942302-CDS-L-elsbetiae_contig10358:3156..36291622815263.0942302-CDS-L-elsbetiae_contig10358:3156..3629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10358 3157..3629 +
1691682804.147501-CDS-L-elsbetiae_contig10358:3156..36291691682804.147501-CDS-L-elsbetiae_contig10358:3156..3629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10358 3157..3629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10358.388.1

>prot_L-elsbetiae_contig10358.388.1 ID=prot_L-elsbetiae_contig10358.388.1|Name=mRNA_L-elsbetiae_contig10358.388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
MASGTPRRPSRESAPGRRRSACRASVFSSLTATERHCPGTPCSPTSATTW
RRDQSTAAVAAAAAASAAAAPRGVVGRAIFPLTPTTVRVSATCLSPRARC
WCGCTASTRTTPTAPCPTKPPSSSLRQRQSSTHRRRHEERWTWKPSGGVP
GRWKGPRSACRGGRETLVFWLGCGGLGVEVTEPRAVAAAGGGGEG*
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mRNA from alignment at L-elsbetiae_contig10358:2466..3796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10358.388.1 ID=mRNA_L-elsbetiae_contig10358.388.1|Name=mRNA_L-elsbetiae_contig10358.388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1331bp|location=Sequence derived from alignment at L-elsbetiae_contig10358:2466..3796+ (Laminarionema elsbetiae ELsaHSoW15)
GGACTCGTCGCTGTTCGAAGAACTCAAGCTGCTGCTGCGAGAGCGCGTCA
TTGCCGCCACCGGCAATGGCGTCAGGGACGCCGAGGCGCCCAAGTCGCGA
AAGCGCGCCCGGAAGGAGGAGGTCTGCGTGCAGGGCGAGCGTCTTCAGTT
CACTTACCGCTACCGAAAGACACTGCCCAGGTACGCGTTGTACGTACCGC
ACGAGGAGGGGTATGCAGGGGTTCGACAAGGTGTGTTCGGCGTGTGCGCG
TGATTTCGTAGGTGTGATATTTATTCCTGTACCTCCCTCCCTGCTACTAC
TAGTGCCTGTTGTGGCAGTTTTTTTTCGCGTCACCGTCCGCGCCGGCAAA
TAAGTGGGCGACAGAGCGGTGATGTGTTTTGTTGTAGACACCTTGTTCTC
CTCGGCCCTGAGTTGGTTGCCAATGCGACGTCAAATCTTGGGGGTCAGAG
GCTGTACGGCCTCGTCAGCAGCAGCAAGTAGCACCAAAGAGCCGCCACCG
CCACACCTTCGTACCCGTCAAGATCGGGTCGGTTCGTCCTTCATCCTCAT
ATTTCGGCCTTTGAGTGTCTGTGTACCTTCGTCGGTCTCTCGTGAAAGTG
GGCGGATACACGCGATTTACACACACAGCCATGATTGAATCGTGTATGTG
ATTCAACATTAACTTTTTTCCCCGCGATGGCCCCGCCCCAGGTACACCGT
GCTCTCCTACGTCGGCGACAACGTGGAGGAGGGACCAAAGCACAGCAGCA
GTAGCAGCAGCAGCAGCGGCATCCGCCGCCGCAGCTCCGCGGGGAGTAGT
GGGAAGAGCAATCTTCCCGTTGACACCGACAACGGTCCGGGTTTCCGCCA
CCTGCCTCTCTCCGAGAGCACGATGCTGGTGTGGGTGTACCGCTTCGACA
AGGACGACCCCTACCGCCCCGTGCCCAACCAAGCCGCCCTCCAGTTCGCT
CCGGCAGCGGCAAAGCAGCACTCACCGACGGCGGCACGAGGAGCGCTGGA
CGTGGAAGCCATCGGGAGGCGTTCCGGGGCGGTGGAAGGGGCCGCGATCG
GCGTGCAGGGGGGGCCGCGAGACACTGGTATTCTGGCTTGGTTGTGGGGG
ACTGGGGGTGGAAGTGACGGAGCCCCGGGCGGTGGCGGCGGCGGGGGGCG
GGGGGGAGGGGTGAGGCAGCACTTCATCGGCAGCGCCTCGTGGCAGGGGA
AGCCGTCGACAGGGCGGGCGGCGGGCGGCGGTCGCGGAGAGGAGGAGGAG
GATGATATACAGCGAGCCATCAAGTTGTCTCTGGCGATGGCGTCCGGGAC
GAGGGCCGGAGGTGTTGAAGAGAGCAAAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10358:2466..3796+

>mRNA_L-elsbetiae_contig10358.388.1 ID=mRNA_L-elsbetiae_contig10358.388.1|Name=mRNA_L-elsbetiae_contig10358.388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig10358:2466..3796+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCAGGGACGCCGAGGCGCCCAAGTCGCGAAAGCGCGCCCGGAAG
GAGGAGGTCTGCGTGCAGGGCGAGCGTCTTCAGTTCACTTACCGCTACCG
AAAGACACTGCCCAGATGGCGTCAGGGACGCCGAGGCGCCCAAGTCGCGA
AAGCGCGCCCGGAAGGAGGAGGTCTGCGTGCAGGGCGAGCGTCTTCAGTT
CACTTACCGCTACCGAAAGACACTGCCCAGGTACACCGTGCTCTCCTACG
TCGGCGACAACGTGGAGGAGGGACCAAAGCACAGCAGCAGTAGCAGCAGC
AGCAGCGGCATCCGCCGCCGCAGCTCCGCGGGGAGTAGTGGGAAGAGCAA
TCTTCCCGTTGACACCGACAACGGTCCGGGTTTCCGCCACCTGCCTCTCT
CCGAGAGCACGATGCTGGTGTGGGTGTACCGCTTCGACAAGGACGACCCC
TACCGCCCCGTGCCCAACCAAGCCGCCCTCCAGTTCGCTCCGGCAGCGGC
AAAGCAGCACTCACCGACGGCGGCACGAGGAGCGCTGGACGTGGAAGCCA
TCGGGAGGCGTTCCGGGGCGGTGGAAGGGGCCGCGATCGGCGTGCAGGGG
GGGCCGCGAGACACTGGTATTCTGGCTTGGTTGTGGGGGACTGGGGGTGG
AAGTGACGGAGCCCCGGGCGGTGGCGGCGGCGGGGGGCGGGGGGGAGGGG
TGAGTACACCGTGCTCTCCTACGTCGGCGACAACGTGGAGGAGGGACCAA
AGCACAGCAGCAGTAGCAGCAGCAGCAGCGGCATCCGCCGCCGCAGCTCC
GCGGGGAGTAGTGGGAAGAGCAATCTTCCCGTTGACACCGACAACGGTCC
GGGTTTCCGCCACCTGCCTCTCTCCGAGAGCACGATGCTGGTGTGGGTGT
ACCGCTTCGACAAGGACGACCCCTACCGCCCCGTGCCCAACCAAGCCGCC
CTCCAGTTCGCTCCGGCAGCGGCAAAGCAGCACTCACCGACGGCGGCACG
AGGAGCGCTGGACGTGGAAGCCATCGGGAGGCGTTCCGGGGCGGTGGAAG
GGGCCGCGATCGGCGTGCAGGGGGGGCCGCGAGACACTGGTATTCTGGCT
TGGTTGTGGGGGACTGGGGGTGGAAGTGACGGAGCCCCGGGCGGTGGCGG
CGGCGGGGGGCGGGGGGGAGGGGTGA
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