mRNA_L-elsbetiae_contig15517.3879.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15517.3879.1
Unique NamemRNA_L-elsbetiae_contig15517.3879.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15517.3879.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.200e-12
Identity = 73/246 (29.67%), Postives = 104/246 (42.28%), Query Frame = -3
Query:   15 DIVNALVAKGAQVN--TVLQSNRQTPLHLACSRQGSSPSAASLPTVDTLLAAGANTDIKDKDGNTPLHLACKMSLEPAVRSLLRCDANEMMANQHGLV------------------------AKDMVCDPNKEAILEMLALAPADRAWRRRRWLVSRRSSALKKRLESANHCPAAEESEAGE--QPKQDDPITKKTRGDDAGEESGGNSGVGGVELDQERYDFDHLVGWVVDIAPEGIFELVVGFL 668
            D V  L+  GA V+  T    N  TPLH A +R+      A +  +  LL  GAN + +D    TPLH+AC  S    V  LL   A+E + +  G                           KD   + ++  I +MLA APADR+W RRRWLV  RS   K ++ + +         +G+    +      K   GDD   E            DQ+  ++  LV  +V +  + +F LVVGFL
Sbjct:   39 DTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRR-----IAPIGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCPTKVQISNTSSSSNISSGSSGDGLSAEMVSVNCKDLGGDDKETE------------DQKTVNWRDLVVRLVGLEADVLFRLVVGFL 267          
BLAST of mRNA_L-elsbetiae_contig15517.3879.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.380e-7
Identity = 59/184 (32.07%), Postives = 91/184 (49.46%), Query Frame = -3
Query:   15 LLAAGANTDIKDKDGNTPLHLACKM---SLEPAVRSLLRCDANEMMANQHGL--------VAKDMVCD-PNKEAILEMLALAPADRAWRRRRWLVSRRSSALKKRLESANHCPAAEESEAGEQPKQDDPITKKTRGDDAGEESGGNSGVGGVELDQERYDFDHLVGWVVDIAPEGIFELVVGFL 530
            LL+ GA  D K  DG+T LHLA       ++  V +LLR  A+E   +++          VA+++V + P  +  LE+LA APADRAWRRR WLV       K+R    +     E+  +GE+    D   ++ RG +A          GG  +   + D   +V  +V +  EG+F  +VG++
Sbjct:  327 LLSRGARVDEKTDDGSTALHLAGHARGYKVDDTVDTLLRWGASEQAVDENDETPVDRLTEVAREVVWEWPELDRALELLARAPADRAWRRRGWLVMLHERTKKERHVRGDRPRKGEKVGSGEEVLLGD--GERGRGKNARRR-------GGAAV---KADLRGVVNVLVGLESEGVFRTIVGYV 498          
BLAST of mRNA_L-elsbetiae_contig15517.3879.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 3.220e-7
Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = -3
Query:  264 LPTVDTLLAAGANTDIKDKDGNTPLHLAC---KMSLEPAVRSLLRCDANEMMANQHGLVAKDMVCDPNKE------------AILEMLALAPADRAWRRRRWLVSRRSSA 548
            L  + TLL  GA+   +D +GNTPLH+AC      LE  V  LLR  A+E   N  G     ++ + + E             +  +LA APADRAWRRR WLV  RS A
Sbjct:  319 LKAMHTLLWHGASLTAQDTEGNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSFA 428          
BLAST of mRNA_L-elsbetiae_contig15517.3879.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.720e-6
Identity = 51/151 (33.77%), Postives = 75/151 (49.67%), Query Frame = -3
Query:  270 AYSWSDIVNALVAKGAQVNTVLQSNRQTPLHLACSRQGSSPSAASLPTVDTLLAAGANTDIKDKDGNTPLHLACKMSLEPA----VRSLLRCDANEMMANQHGLVAKDMVCDPNKEA---------ILEMLALAPADRAWRRRRWLVSRRS 683
            A+  +  ++ L   GA +    Q+N  TPLH+A S++G       L     LL  GA+   K+    TPLHL    +  P     V  LLR  A+E   +++G  A DMV    +E+         + ++LA APADRAWRRR +L+  R+
Sbjct:  566 AFDKAPAIDVLTEAGANIEA--QANGSTPLHVA-SQEGR------LAAGIALLRHGASVGKKNAAAQTPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRA 707          
BLAST of mRNA_L-elsbetiae_contig15517.3879.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.350e-5
Identity = 57/179 (31.84%), Postives = 83/179 (46.37%), Query Frame = -3
Query:   15 DGNTPLHLAC---KMSLEPAVRSLLRCDANEMMANQHGLVAKDMVCDPNKE-----------AILEMLALAPADRAWRRRRWLVSRRSSALKKRLESANHCPAAEES-EAGEQPKQDDPITKKTRGDDAGEESGGN-----SGVGGVELDQERYDFDHLVGWVVDIAPEGIFELVVGFL 491
            +G TPLH AC    + +E  V  LL+  A+E   +  G    D + + N E            +  +LA APA+RAWRRR WLV  RS A   R  +     A E S + G++    D   K  R ++ GE +GG      +G G V ++        +V  VV + PE +F  ++ FL
Sbjct:  279 EGTTPLHRACYRQDIGVEATVDLLLQWGADETAVHNDGNTPADWLVENNNENGTTCSTAEIGRVRLLLARAPANRAWRRRCWLVMLRSCAKTARATTDKTGDADEGSNDVGDRK---DGKCKGARREN-GESAGGGVRSRMNGAGEVGVEGGASGLASIVASVVGLGPEEVFRSILSFL 453          
BLAST of mRNA_L-elsbetiae_contig15517.3879.1 vs. uniprot
Match: A0A226NB02_CALSU (BTB domain-containing protein n=2 Tax=Archelosauria TaxID=1329799 RepID=A0A226NB02_CALSU)

HSP 1 Score: 57.4 bits (137), Expect = 1.830e-5
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = -3
Query:  390 NALVAKGAQVNTVLQSNRQTPLHLACSRQGSSPS----AASLPTVDTLLAAGANTDIKDKDGNTPLHLACKMSLEPAVRSLLRCDANEMMANQH 659
            N L+  GA+VN     +++TPLHL  S      S    A      ++LL AGAN +++D  G TPLH++  +  EP    LL+C   ++    H
Sbjct:  293 NFLIKNGARVNAATLGDQETPLHLVASYSAKKHSPDVMAEMAQIAESLLQAGANPNMQDSKGRTPLHMSIVVRNEPVFSQLLQCKQLDLELKDH 386          
BLAST of mRNA_L-elsbetiae_contig15517.3879.1 vs. uniprot
Match: D7FVI9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI9_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.270e-5
Identity = 76/258 (29.46%), Postives = 100/258 (38.76%), Query Frame = -3
Query:   15 IVNALVAKGAQVNTVLQSNRQTPLHLACSRQGSSPSAASLPTVDTLLAAGANTDIK----------------DKD------------------------GNTPLHLACKMSLEPAV-RSLLRCDANEMMANQHGLVAKDMVCDPNKEAILEMLALAPADRAWRRRRWLVSRRSSALKKRLESANHCPAAEESEAGEQPKQDDPITKKTRGDDAGEESGGNSGVGGVELDQERYDFDHLVGWVVDIAPEGIFELVVGFL 665
            +VNAL++KG      + ++  T LHLA           SLP ++TLL AGA+ DI+                 KD                        G+TPLH AC  S   AV R LL+  A+E   N  G          +   + E+LA    DRAWRRR WLV  R   LK            +   AG +       + K RG           G GG E   E ++    V W+  +  EG+F  VV FL
Sbjct:  211 VVNALLSKGGLEIDAVDTDGTTALHLAVIM------GRSLPIMETLLVAGADPDIRINTGGVQDCPLETACHSKDNIGTYHVCKTLIDHGADVNSRCPFGSTPLHHACDYSQSDAVLRLLLQAGADENALNDDG----------DTPGVRELLA----DRAWRRRGWLVMLRLRTLKA---------GGDGGAAGAR-------SAKQRG-----------GSGGGE---ESFNLSEAVEWL-GVVEEGVFRNVVSFL 417          
BLAST of mRNA_L-elsbetiae_contig15517.3879.1 vs. uniprot
Match: A0A226PHJ9_COLVI (Uncharacterized protein n=1 Tax=Colinus virginianus TaxID=9014 RepID=A0A226PHJ9_COLVI)

HSP 1 Score: 56.6 bits (135), Expect = 2.520e-5
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = -3
Query:  390 NALVAKGAQVNTVLQSNRQTPLHLACSRQGSSPS----AASLPTVDTLLAAGANTDIKDKDGNTPLHLACKMSLEPAVRSLLRCDANEMMANQH 659
            N L+  GA+VN     +++TPLHL  S      S    A      ++LL AGAN +++D  G TPLH++  +  EP    LL+C   ++    H
Sbjct:  192 NFLIKNGARVNAATLGDQETPLHLVASYSPKKHSPDVMAEMAQIAESLLQAGANPNMQDSKGRTPLHMSIVVRNEPVFSQLLQCKQLDLELKDH 285          
BLAST of mRNA_L-elsbetiae_contig15517.3879.1 vs. uniprot
Match: F1NSB6_CHICK (FYVE-type domain-containing protein n=55 Tax=Neognathae TaxID=8825 RepID=F1NSB6_CHICK)

HSP 1 Score: 56.6 bits (135), Expect = 3.320e-5
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = -3
Query:  390 NALVAKGAQVNTVLQSNRQTPLHLACSRQGSSPS----AASLPTVDTLLAAGANTDIKDKDGNTPLHLACKMSLEPAVRSLLRCDANEMMANQH 659
            N L+  GA+VN     +++TPLHL  S      S    A      ++LL AGAN +++D  G TPLH++  +  EP    LL+C   ++    H
Sbjct:  192 NFLIKNGARVNAATLGDQETPLHLVASYSPKKHSPDVMAEMAQIAESLLQAGANPNMQDSKGRTPLHMSIVVRNEPVFSQLLQCKQLDLELKDH 285          
BLAST of mRNA_L-elsbetiae_contig15517.3879.1 vs. uniprot
Match: A0A850X6G4_PIACA (ANFY1 protein (Fragment) n=1 Tax=Piaya cayana TaxID=33601 RepID=A0A850X6G4_PIACA)

HSP 1 Score: 56.2 bits (134), Expect = 4.120e-5
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = -3
Query:  390 NALVAKGAQVNTVLQSNRQTPLHLACSRQGSSPS----AASLPTVDTLLAAGANTDIKDKDGNTPLHLACKMSLEPAVRSLLRCDANEMMANQH 659
            N L+  GA+VN     +++TPLHL  S      S    A      ++LL AGAN +++D  G TPLH++  +  EP    LL+C   ++    H
Sbjct:  306 NFLIKNGARVNAATLGDQETPLHLVASYSPKKHSPDVMAEMAQIAESLLQAGANPNMQDSKGRTPLHVSIVVRNEPVFSQLLQCKQLDLELKDH 399          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15517.3879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5K6K9_9PHAE2.200e-1229.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K513_9PHAE1.380e-732.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS36_ECTSI3.220e-740.00Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JHY9_9PHAE1.720e-633.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRZ8_ECTSI1.350e-531.84Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A226NB02_CALSU1.830e-534.04BTB domain-containing protein n=2 Tax=Archelosauri... [more]
D7FVI9_ECTSI2.270e-529.46Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A226PHJ9_COLVI2.520e-534.04Uncharacterized protein n=1 Tax=Colinus virginianu... [more]
F1NSB6_CHICK3.320e-534.04FYVE-type domain-containing protein n=55 Tax=Neogn... [more]
A0A850X6G4_PIACA4.120e-534.04ANFY1 protein (Fragment) n=1 Tax=Piaya cayana TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15517contigL-elsbetiae_contig15517:1222..2158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size937
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15517.3879.1prot_L-elsbetiae_contig15517.3879.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15517 1564..2049 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.1087673-UTR-L-elsbetiae_contig15517:1221..15631622815634.1087673-UTR-L-elsbetiae_contig15517:1221..1563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15517 1222..1563 +
1691683004.2744038-UTR-L-elsbetiae_contig15517:1221..15631691683004.2744038-UTR-L-elsbetiae_contig15517:1221..1563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15517 1222..1563 +
1622815634.1387591-UTR-L-elsbetiae_contig15517:2049..21581622815634.1387591-UTR-L-elsbetiae_contig15517:2049..2158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15517 2050..2158 +
1691683004.2954748-UTR-L-elsbetiae_contig15517:2049..21581691683004.2954748-UTR-L-elsbetiae_contig15517:2049..2158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15517 2050..2158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.1227398-CDS-L-elsbetiae_contig15517:1563..20491622815634.1227398-CDS-L-elsbetiae_contig15517:1563..2049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15517 1564..2049 +
1691683004.285911-CDS-L-elsbetiae_contig15517:1563..20491691683004.285911-CDS-L-elsbetiae_contig15517:1563..2049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15517 1564..2049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15517.3879.1

>prot_L-elsbetiae_contig15517.3879.1 ID=prot_L-elsbetiae_contig15517.3879.1|Name=mRNA_L-elsbetiae_contig15517.3879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
MASLFGSHTMSLATSPCWLAIISFASHRNNDLTAGSRDILQARCSGVFPS
LSLMSVFAPAAKSVSTVGKLAAEGEEPWRLQARCSGVCRLLCKTVFTWAP
LATNALTMSLQLYAPCLHPTNLGRQNAERLKVCPDWVVGKPRACLPFLDY
RHLQPAPGTWG*
back to top

mRNA from alignment at L-elsbetiae_contig15517:1222..2158+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15517.3879.1 ID=mRNA_L-elsbetiae_contig15517.3879.1|Name=mRNA_L-elsbetiae_contig15517.3879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=937bp|location=Sequence derived from alignment at L-elsbetiae_contig15517:1222..2158+ (Laminarionema elsbetiae ELsaHSoW15)
CACCTCGCACAAGACAGGAACCCAACCACCAGCTCGAAAATACCCTCGGG GGCGATATCAACGACCCAGCCCACCAGGTGATCGAAGTCGTATCTCTCTT GGTCCAACTCGACACCGCCCACACCGCTGTTTCCTCCACTCTCCTCGCCA GCATCATCCCCCCTCGTCTTCTTGGTAATAGGGTCATCCTGCTTCGGCTG TTCCCCCGCTTCGCTTTCTTCCGCCGCCGGGCAGTGGTTGGCACTCTCCA GTCTCTTCTTCAGAGCGCTCGATCGGCGCGACACTAACCACCGCCGGCGA CGCCAGGCCCTGTCAGCAGGAGCGAGTGCCAACATTTCGAGGATGGCCTC CTTGTTCGGGTCACACACCATGTCCTTGGCCACAAGCCCGTGTTGGTTAG CCATCATCTCGTTCGCATCACACCGCAACAACGATCTCACCGCGGGCTCG AGAGACATTTTGCAGGCGAGGTGCAGCGGTGTGTTTCCATCCTTGTCTTT GATGTCGGTGTTCGCCCCGGCGGCCAAAAGCGTATCAACCGTGGGCAAGC TTGCCGCCGAGGGCGAAGAGCCCTGGCGGCTGCAAGCGAGATGTAGCGGT GTCTGCCGGTTGCTCTGCAAAACTGTGTTCACCTGGGCCCCTTTGGCGAC CAACGCATTGACGATGTCGCTCCAGCTATATGCGCCGTGCCTTCATCCCA CGAACCTCGGGCGGCAAAATGCAGAGCGATTGAAAGTCTGCCCGGATTGG GTGGTAGGAAAGCCAAGAGCTTGTTTACCATTTCTGGATTACCGCCACCT GCAGCCAGCCCCAGGCACTTGGGGATAAGAATCTCACAAGGCGCTCGAGG AAACAGCGATGGCGATGGATCGGGTGCCATGTTCGCGTTTGCTCCTCGGG CCAGGAGCCCCTCCAGCATCTCGGTGCGGCGATGCTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15517:1222..2158+

>mRNA_L-elsbetiae_contig15517.3879.1 ID=mRNA_L-elsbetiae_contig15517.3879.1|Name=mRNA_L-elsbetiae_contig15517.3879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig15517:1222..2158+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTCCTTGTTCGGGTCACACACCATGTCCTTGGCCACAAGCCCGTG
TTGGTTAGCCATCATCTCGTTCGCATCACACCGCAACAACGATCTCACCG
CGGGCTCGAGAGACATTTTGCAGGCGAGGTGCAGCGGTGTGTTTCCATCC
TTGTCTTTGATGTCGGTGTTCGCCCCGGCGGCCAAAAGCGTATCAACCGT
GGGCAAGCTTGCCGCCGAGGGCGAAGAGCCCTGGCGGCTGCAAGCGAGAT
GTAGCGGTGTCTGCCGGTTGCTCTGCAAAACTGTGTTCACCTGGGCCCCT
TTGGCGACCAACGCATTGACGATGTCGCTCCAGCTATATGCGCCGTGCCT
TCATCCCACGAACCTCGGGCGGCAAAATGCAGAGCGATTGAAAGTCTGCC
CGGATTGGGTGGTAGGAAAGCCAAGAGCTTGTTTACCATTTCTGGATTAC
CGCCACCTGCAGCCAGCCCCAGGCACTTGGGGATAAATGGCCTCCTTGTT
CGGGTCACACACCATGTCCTTGGCCACAAGCCCGTGTTGGTTAGCCATCA
TCTCGTTCGCATCACACCGCAACAACGATCTCACCGCGGGCTCGAGAGAC
ATTTTGCAGGCGAGGTGCAGCGGTGTGTTTCCATCCTTGTCTTTGATGTC
GGTGTTCGCCCCGGCGGCCAAAAGCGTATCAACCGTGGGCAAGCTTGCCG
CCGAGGGCGAAGAGCCCTGGCGGCTGCAAGCGAGATGTAGCGGTGTCTGC
CGGTTGCTCTGCAAAACTGTGTTCACCTGGGCCCCTTTGGCGACCAACGC
ATTGACGATGTCGCTCCAGCTATATGCGCCGTGCCTTCATCCCACGAACC
TCGGGCGGCAAAATGCAGAGCGATTGAAAGTCTGCCCGGATTGGGTGGTA
GGAAAGCCAAGAGCTTGTTTACCATTTCTGGATTACCGCCACCTGCAGCC
AGCCCCAGGCACTTGGGGATAA
back to top