mRNA_L-elsbetiae_contig15514.3878.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15514.3878.1
Unique NamemRNA_L-elsbetiae_contig15514.3878.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15514.3878.1 vs. uniprot
Match: A0A6H5J6X8_9PHAE (NGN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X8_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 6.270e-35
Identity = 63/82 (76.83%), Postives = 77/82 (93.90%), Query Frame = 1 
Query:    4 QIRDMINDMERIVGFMGEERDQAKRLIPEKMDPKDIEGMRESEKALGDNKIPNLLGVGDLVEISEGPYALKKGEVSKIKEGE 249
            ++RD++NDM+RIVGF+GE RD+ K+LIPE+MDP+DIEG++ SEKALG NKIP LLGVGDLVEISEGP+ALKKGEVSKIK+GE
Sbjct:  268 EVRDIVNDMDRIVGFVGEARDEDKKLIPERMDPEDIEGIKASEKALGANKIPQLLGVGDLVEISEGPFALKKGEVSKIKDGE 349
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BLAST of mRNA_L-elsbetiae_contig15514.3878.1 vs. uniprot
Match: D7FH57_ECTSI (Putative transcription antitermination protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH57_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.220e-34
Identity = 63/83 (75.90%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 LQIRDMINDMERIVGFMGEERDQAKRLIPEKMDPKDIEGMRESEKALGDNKIPNLLGVGDLVEISEGPYALKKGEVSKIKEGE 249
            L++RD++NDM+RIVGF+GE RD+ K+LIPE+M+P+DIEG++ SEKALG NKIP LLGVGDLVEISEGP+ALKKGEVSKIK+GE
Sbjct:  290 LEVRDIVNDMDRIVGFVGEARDEDKKLIPERMEPEDIEGIKASEKALGANKIPQLLGVGDLVEISEGPFALKKGEVSKIKDGE 372
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15514.3878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J6X8_9PHAE6.270e-3576.83NGN domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FH57_ECTSI3.220e-3475.90Putative transcription antitermination protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15514contigL-elsbetiae_contig15514:99..2138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative transcription antitermination protein
Ec32 orthologEc-13_000840.1
Exons2
Model size249
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15514.3878.1prot_L-elsbetiae_contig15514.3878.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15514 114..2138 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.0213332-UTR-L-elsbetiae_contig15514:98..1131622815634.0213332-UTR-L-elsbetiae_contig15514:98..113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15514 99..113 +
1691683004.2278032-UTR-L-elsbetiae_contig15514:98..1131691683004.2278032-UTR-L-elsbetiae_contig15514:98..113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15514 99..113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.032962-CDS-L-elsbetiae_contig15514:113..2541622815634.032962-CDS-L-elsbetiae_contig15514:113..254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15514 114..254 +
1691683004.2386413-CDS-L-elsbetiae_contig15514:113..2541691683004.2386413-CDS-L-elsbetiae_contig15514:113..254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15514 114..254 +
1622815634.0427043-CDS-L-elsbetiae_contig15514:2045..21381622815634.0427043-CDS-L-elsbetiae_contig15514:2045..2138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15514 2046..2138 +
1691683004.257763-CDS-L-elsbetiae_contig15514:2045..21381691683004.257763-CDS-L-elsbetiae_contig15514:2045..2138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15514 2046..2138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15514.3878.1

>prot_L-elsbetiae_contig15514.3878.1 ID=prot_L-elsbetiae_contig15514.3878.1|Name=mRNA_L-elsbetiae_contig15514.3878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
MINDMERIVGFMGEERDQAKRLIPEKMDPKDIEGMRESEKALGDNKIPNL
LGVGDLVEISEGPYALKKGEVSKIKEGE
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mRNA from alignment at L-elsbetiae_contig15514:99..2138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15514.3878.1 ID=mRNA_L-elsbetiae_contig15514.3878.1|Name=mRNA_L-elsbetiae_contig15514.3878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2040bp|location=Sequence derived from alignment at L-elsbetiae_contig15514:99..2138+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCAGATCCGGGACATGATTAACGATATGGAAAGGATCGTCGGTTTCAT
GGGGGAGGAGAGGGACCAGGCGAAGAGGCTCATTCCCGAGAAGATGGATC
CGAAGGACATCGAGGGCATGAGGGAATCCGAGAAGGCCCTTGGGGACAAC
AAAATCGTGAGGAAACATAACATCAAACGTACGTAGTATGTAGATCAATA
TATTTATAATAAGAACAACATTTAGTGATCCGATAGTCGTAGGAAGGACC
TTGGGGCCGACAAAATTGTAAGAATGACATACCTGAGTAAGTAGTGATAC
ATCAGATGGTAGTATTATAAAAATATTAGTTGGCAAGAATAACGTACCTG
ACAAAGATTCAGAAGTAAATCAGATGTAGAGTAAATCTATAGGGGGGGGG
GGGGGGGGGCCCCTTCTTGTGGGGCCCGGGGGGGGGGGGGGGGGTNNNNN
NNNNNAAAAAATATATTGTGGAAAAAAAAAACCACACACAAAAAGGTTAA
AAAAAAAAAAGGTGAGGGAGGAGATTGGGGGGGGGGGGGGGGGGGGTCCC
CTTCTTGTGTGGCCCCGGTTGAGTGGTTGAGCTATGTAGTTGTAGTGGAG
GAAGGGGGCTAGTGTGGCAGACGACGAATAAGCCAATAATGGGAGGCGAA
ACAATACGATCCGAGCCTCTGGCGGTTGCACCGGAGCCTCTGGCATCCAC
CTGTGCATCTTGACAAGTCAGCACTCAGATCTCTGAAGCTCCGGCCCTCA
AGTAGGCTCATGCCCATTGTGCTAGCATAACATAAAGCATAATCGGCCTT
TTGGAGCATAAGCGAAAGCATAAGTGGCGAGGAGCAATGCTCGAGCATTG
TTCAGGAATATTAGAGCATAACTGCTTGTGTTTGGAGATAAAATGCCTCG
AAGTATTTTTGAATGGGAAACCACACGAGAGGGTAAAAACAGGTCTGCGC
CGCCCTGTCAGAGCACCGGGTGCGTCATTTTGCCAGGTCTTCTAGAAGTA
TAATTGGACTTTTGGAGCTTAAGTTGACGCATATTTTTGGTGATGAGCAT
TTTTCGAGCATAGTTAGCAGGAAGAGCATAGCAGGCCGCCACAGAGGACA
CAAATAGCCCAGTCCGACCCTTCCAGAGCAAAAACTGCCCCGAAAACGGA
GCATAAGAGGGACCATAACTGCCGAAAAAAGGCATCACCGGTGAGCATAT
TTGACATCTGGACGCATACATATGCTTTGCGAAAAAACGGAGCATAAAAA
GAGAAAAAAAAGAGCACAATGGGCCTAAGCCTACCCTCAAGCGTCACCCC
CGGCCTTTTTGTTGCCCTCCGCGGGGACCCACCCCTCCGGTTTATATACA
TGGCTTTTTACGGCAGGGCCCCCAATTTGAGAAGGTGGCTGCGGGAGGAT
TTTTCAATGTATTTTCTAGATGAATACAAGATCCCCCTTTCGGAGCGAAC
TCACGAGAGCACAGTGACAGGGGATGACGCAAGGCCAAAGCAAACAGACT
CATCAGGCAGGCACAACAGCAGCCGTCCAGACTCCTGGCATGTGCTGCTG
CCATGCTCAAAACAGCTGCTGTCATACTGACGTTTTTTTAGGCCATTGGA
AGCTGAAAGCCCACTAGATTCAGAATCGGAACAGTAGTCCCCATACTCCA
TTTTGTATGTAGTCATATACCCCCCGCGCTGCCCCCCACAGCTCTTTTTG
AGGATTGGGGGCTCTTTTTGAGAATTGGGGGCCTACAGCAAGAAGCCTTT
GAGATGTGTTGTAAATCCCCCCCCCCCCCCCCCCCGGGCTAACTTGCTGG
GGGTTTGTTTTTGTGGGTGTTTGTGGGCCCACCATCCGGTTGGGGNNNNN
NNNNNCCCCCATGTCCCCCACCCCCTGCAACTTAGCCCCCCCCCCCCCCC
CCCGGCTGCTATCTGCTGTATCTATGCTTTGTGTTGGTTGTGTACAGCCC
AACTTGCTGGGGGTGGGAGATCTGGTGGAAATCTCCGAGGGTCCGTACGC
GTTGAAGAAGGGAGAGGTGTCCAAGATTAAGGAGGGTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15514:99..2138+

>mRNA_L-elsbetiae_contig15514.3878.1 ID=mRNA_L-elsbetiae_contig15514.3878.1|Name=mRNA_L-elsbetiae_contig15514.3878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig15514:99..2138+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTAACGATATGGAAAGGATCGTCGGTTTCATGGGGGAGGAGAGGGA
CCAGGCGAAGAGGCTCATTCCCGAGAAGATGGATCCGAAGGACATCGAGG
GCATGAGGGAATCCGAGAAGGCCCTTGGGGACAACAAAATCATGATTAAC
GATATGGAAAGGATCGTCGGTTTCATGGGGGAGGAGAGGGACCAGGCGAA
GAGGCTCATTCCCGAGAAGATGGATCCGAAGGACATCGAGGGCATGAGGG
AATCCGAGAAGGCCCTTGGGGACAACAAAATCCCCAACTTGCTGGGGGTG
GGAGATCTGGTGGAAATCTCCGAGGGTCCGTACGCGTTGAAGAAGGGAGA
GGTGTCCAAGATTAAGGAGGGTGAGCCCAACTTGCTGGGGGTGGGAGATC
TGGTGGAAATCTCCGAGGGTCCGTACGCGTTGAAGAAGGGAGAGGTGTCC
AAGATTAAGGAGGGTGAG
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