mRNA_L-elsbetiae_contig155.3867.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig155.3867.1 vs. uniprot
Match: D8LAZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ4_ECTSI) HSP 1 Score: 551 bits (1421), Expect = 1.620e-177 Identity = 446/958 (46.56%), Postives = 533/958 (55.64%), Query Frame = 1
Query: 346 MMAKIRRAAMLRAIRNRTILRIMVSVESLVEEQLDEAKFFVQNVVALRAFQIHRSARIIQNALRRRGEIMRRAAAVIVRATRCWLARGSLRRARIRRGIGRFHGSLSRRALGLKEADPFAVPATRNFPTDGRWWDTGAPAVPRANWGTLRVENEEARSRQRARSLADLIRGGQPENEAAGAXXXXXXXXGQGGRGGHVGAGITRVSGGGGEDGTRETLPLPSWKTKRWRPGRNKGGDTVGKEAPRGGQ-----NSNATQRAVESTEIPVGFGKRVTSRRAASMVDARDAEKAALLNELERQQARRKAVAPAFDKLSIVEKHLHREREFQEQREKRRAVAERQALKKEKQRAKEITEAARRKAVEAELXXXXXXXXXRKRLEKIHQYKEKKAARELAARKALAAQKGEERRAKAVEEAKRLAIETAFEKEKVERLERARRXXXXXXXXXXXXXXXXXXXXXXXSGITQKLSATAPAHHRTKKHASTNKSRTALAPIAVTNTGRDDGRTRKRHAARLSRTSSCTV----------VDGSAATTKSGRSAAVKASSTLRVAAGVRDGRRKLAPHGASIPALPVVPGWKAMAAGGTERVENRKRTRRRPPKRAIVGEAGDERGSEVDGERGDGTWATDDFDGILRARNSTADLERLLSTSAGGGGLATLAPAAGTGGSVLDENTGAEEYLDQKSXXXXXXXXXXXXXXXXXXXXXXXXXXSHH---LAGDECLSMETLDSAFPVPEEGGEIGGGGSLGETSAPGGF--MSPGWSSRSSRRSSEAGETSSDALSDSAAIRHGKSLLSGESAGPVRGWRRS-AGGGVNSAEEPAVAT--------AEPREEHTALLPPA-TGDQERSPS--LLVQLQPTAFPDDGVSDMSDNQTFIGRQWHGGEESG--EDERGGFEGIELSPSYFGRENAGRNAQDVGVGI--LGAESAHLLAAGRLYTADEE 3111
M+AKIRRAA+LRA+RNR IL IMVS E+LV+EQLDEAKFFV+NV+ALR F+ R+ARIIQ R R E+ RR+AA+IVRATR WL RGSLRRARIRRGI R+ GSLSRR LGLKE PFA+ R FP +GRWWD+G P PR WGTLRVENEEARSR RA SLADLIR GQ +++ XX R G+ A + GGGG GT P+W+ K W G + G+ +G EA GG+ NS T + I +GF K + RRAASMVD R+AEKAAL++E+ER+ ARR AVAP F+ LSIVEKH REREFQEQREKRRA AER+ + +EI EAARRKA+EAEL RKRLEKI LA E +FE+E+ LERA+R +Q +SATAP HHRTKKHA+ +++R ALA + V G + S S + ++RVAAGVRDGRRK+APHGA++PALPVVPG+KAMAAGGT VE RKR RRRPPK + G R ++DG G T ATD +D IL RN TAD L TS G G L + G G L N+ +E + XXXXXXXXX H LA DECLS ETLDS F VPE G +G GG GE +AP G +SPGWSSRSSRRSSE G+TSS LSDSAAIR GK+LLS GPV GW ++ GGV SA A A E RE H A P G + P + P A PD+ VSD++DNQ I ++ E+ EDE + + G DV +G ESA LL GRLYTAD++
Sbjct: 1 MLAKIRRAAILRAVRNRNILSIMVSAETLVQEQLDEAKFFVKNVIALRDFKTQRAARIIQGGFRHRAEVTRRSAAMIVRATRRWLMRGSLRRARIRRGIRRYRGSLSRRNLGLKETSPFALTVAREFPREGRWWDSGLPVAPRPKWGTLRVENEEARSRHRALSLADLIRTGQQKSDXXXXXX----------RAGNARASMAPAEGGGGVGGTS-----PTWEAKGWGSGSSSKGNAIGIEATGGGRRNRNSNSMRTDAGGTAATIGMGFSKGASVRRAASMVDPREAEKAALMDEIERRHARRTAVAPPFNTLSIVEKHQQREREFQEQREKRRAAAERETRRXXXXXXREIAEAARRKALEAELLAEMEKEKARKRLEKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAEASFERERANWLERAKRKPRAEEKAKRRKDGRGRGAEG-----SQDMSATAPVHHRTKKHAAPDRTRPALASMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPGGVTGGESAISSSCSTLPRVDRSVRVAAGVRDGRRKVAPHGATVPALPVVPGYKAMAAGGTGCVEKRKRPRRRPPKGNAAAQGGRGR-VKLDG--GATTCATDVYDEILNTRNGTADP---LPTSGGDGAGMVLRNSGGEVGFGL-RNSVLQESVANILPGGPREQHQREVXXXXXXXXXVGRGSGHRSSCLAEDECLSTETLDSVFAVPESG--VGSGGGGGEANAPEGLGGLSPGWSSRSSRRSSEEGDTSSGFLSDSAAIREGKALLSD---GPVGGWGKARTEGGVTSAAATAAAVETVVGGIITEARERHAASFSPGEVGAGQAGPKQHTIKTTSPAALPDN-VSDVTDNQMPIDQRQQEQEQQQIVEDE------LTAQSPTSSLSSVGNGEYDVAETETEIGVESADLLEGGRLYTADDD 919
BLAST of mRNA_L-elsbetiae_contig155.3867.1 vs. uniprot
Match: A0A6H5KZC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC1_9PHAE) HSP 1 Score: 312 bits (799), Expect = 4.340e-94 Identity = 198/347 (57.06%), Postives = 239/347 (68.88%), Query Frame = 1
Query: 346 MMAKIRRAAMLRAIRNRTILRIMVSVESLVEEQLDEAKFFVQNVVALRAFQIHRSARIIQNALRRRGEIMRRAAAVIVRATRCWLARGSLRRARIRRGIGRFHGSLSRRALGLKEADPFAVPATRNFPTDGRWWDTGAPAVPRANWGTLRVENEEARSRQRARSLADLIRGGQPENEAAGAXXXXXXXXGQGGRGGHVGAGITRVSGG-GGEDGTRETLPLPSWKTKRWRPGRNKGGDTVGKEAPRGGQ-----NSNATQRAVESTEIPVGFGKRVTSRRAASMVDARDAEKAALLNELERQQARRKAVAPAFDKLSIVEKHLHREREFQEQREKRRAVAERQALKK 1368
M+AKIRRAA+LRA+RNR IL IMVSVE+LV+EQLDEAKFFV+NV+ALR F+ R+ARIIQ R R E+ RR+ A+IVRATR WL RGSLRRARIRRGI R+ GSLSRR LGL+E PFA+ R FP +GRWWD+G PR WGTLRV NEEARSRQRA SLADLI GQ ++ X GR G+ ++ + GG GG GT P+WK K G + G+ +G EA GG+ +S T+ + I +GF K RRAASMVD R+AEKAAL++E+ R+ ARR AVAP+F+ LSI EKH REREFQEQREKRRA ER+A +K
Sbjct: 1 MLAKIRRAAILRAVRNRNILNIMVSVETLVQEQLDEAKFFVKNVIALRDFKTQRAARIIQGGFRHRAEVTRRSVAMIVRATRRWLMRGSLRRARIRRGIRRYRGSLSRRNLGLQETSPFALTVAREFPREGRWWDSGPSVAPRPKWGTLRVRNEEARSRQRALSLADLIITGQQKSXXXXXX----------GRAGNARVTMSPLEGGSGGVSGTS-----PTWKAKGRGSGSSSKGNAIGIEATGGGRRNKHYDSIRTEAGGTAAAIGIGFSKGAAIRRAASMVDPREAEKAALMDEIGRRHARRTAVAPSFNTLSIAEKHQLREREFQEQREKRRAAVEREARRK 332
BLAST of mRNA_L-elsbetiae_contig155.3867.1 vs. uniprot
Match: A0A6H5KYM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYM1_9PHAE) HSP 1 Score: 198 bits (504), Expect = 3.320e-51 Identity = 216/497 (43.46%), Postives = 255/497 (51.31%), Query Frame = 1
Query: 1735 LSATAPAHHRTKKHASTNKSRTALAPIAVTNTGRDDGRTRKRHAARLSRTSSCTVVDGSAATT--KSGRSAAVKAS-STL-------RVAAGVRDGRRKLAPHGASIPALPVVPGWKAMAAGGTERVENRKRTRRRPPKRAIVGEAGDERGS---EVDGERGDGTWATDDFDGILRARNSTADLERLLSTSAGGGGLATLAPAAGTGGSVLDENTGAEEYLDQKSXXXXXXXXXXXXXXXXXXXXXXXXXXSHH---LAGDECLSMETLDSAFPVPEEGGEIGGGGSLGETSAPGGF--MSPGWSSRSSRRSSEAGETSSDALSDSAAIRHGKSLLSGESAGPVRGWRRS-AGGGVNSAEEPAVAT--------AEPREEHTALLPPA---TGDQERSPSLLVQLQPTAFPDDGVSDMSDNQTFIGRQWHGGEESG--EDERGGFEGIE-LSPSYFGRENAGRNAQDVGVGILGAESAHLLAAGRLYTADEEHGGGV 3126
+SATAP HHRTKKHA+ +++R LAP+ K+G +A+ +S STL RVAAGVRDGRRK+APHGA++PALPVVPG+KAMAAGGT VE RKR RRRP K G A ERG ++DG G T ATD FD IL N TAD L TS G G L + G G L ++ +E + XXXXXXXXXXXXXX H LA DE LS ETLDS F VPE G GGGG E +AP G +SPGWSSRSSRRSSE G++SS LSDSAAIR GK+LLS GPV W ++ GGV S A A E RE H A P G + + + PTA PDD SDM+DNQ I ++ E EDE LS G + ++GV ESA LL R Y AD++ GV
Sbjct: 1 MSATAPVHHRTKKHAAPDRTRPTLAPMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTGGDSAISSSCSTLPRVHRAVRVAAGVRDGRRKVAPHGATVPALPVVPGYKAMAAGGTGCVETRKRPRRRPRK----GNAAAERGRGRVQLDG--GATTCATDVFDEILNTGNGTADP---LPTSGGDGAGLALRISGGEVGFGLKDSV-LQESVANILPGGPREQHQREVXXXXXXXXXXXXXXXHRRSCLAEDEFLSTETLDSVFAVPESGVGSGGGGR--EANAPEGLGGLSPGWSSRSSRRSSEGGDSSSGFLSDSAAIRDGKTLLSD---GPVGDWGKARTDGGVTSDAATAAAVETVVGGIITEARERHAASFSPGEVGAGQADPNQHTIKTTSPTALPDD-TSDMTDNQMPINQRQQEQEHQQIVEDELTAQSPTSSLSSVGSGEYDVAETETEIGV-----ESADLLEGRRRYIADDDDQKGV 476 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig155.3867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig155.3867.1 >prot_L-elsbetiae_contig155.3867.1 ID=prot_L-elsbetiae_contig155.3867.1|Name=mRNA_L-elsbetiae_contig155.3867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1044bp GAPQLRAGKRPRSGLTTSAITVQRRPFFDEHKWALLEKEQESERRRVEEAback to top mRNA from alignment at L-elsbetiae_contig155:15590..25384- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig155.3867.1 ID=mRNA_L-elsbetiae_contig155.3867.1|Name=mRNA_L-elsbetiae_contig155.3867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9795bp|location=Sequence derived from alignment at L-elsbetiae_contig155:15590..25384- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig155:15590..25384- >mRNA_L-elsbetiae_contig155.3867.1 ID=mRNA_L-elsbetiae_contig155.3867.1|Name=mRNA_L-elsbetiae_contig155.3867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6264bp|location=Sequence derived from alignment at L-elsbetiae_contig155:15590..25384- (Laminarionema elsbetiae ELsaHSoW15)back to top |