prot_L-elsbetiae_contig155.3865.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig155.3865.1
Unique Nameprot_L-elsbetiae_contig155.3865.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length472
Homology
BLAST of mRNA_L-elsbetiae_contig155.3865.1 vs. uniprot
Match: D8LAZ6_ECTSI (RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ6_ECTSI)

HSP 1 Score: 441 bits (1134), Expect = 8.850e-149
Identity = 283/473 (59.83%), Postives = 321/473 (67.86%), Query Frame = 0
Query:    7 KKNSSGKTIASGTSTNAWEKLLA--GGAAAANKTVNAGTEQVQAGTAVA---------PRSDKLPTKT---------KGLGNLYTSMSNNWEHLLTGGKATTAAAGAGAGNGHVSDKSKRXXXXSGSKGSKRPRSEIGQAGSSDSATPTTPDFFPAKRVSNGVQPQPVTGPGGKAGSMKRKRASADSADGNAKDTSVKDIDTYVPGTKHKQQKQHHYSGAPNWKKPGSNVLNLAFLVQKEEAAAAXXXXXXXXGGNAAKHRGRDKGRGSRAGGRRGSEQALTAEEKAQYVALDCEMVGVGPGGCRSALARCCLVDWEGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDRTLVGHALSNDLKALMMSHPPRATRDTATYRPYQKAHGKAGGKLRPKSLKILSQEHLDRMIQSGQHNPAEDARAAMDLYKLARFEWEKSLSAAGKMRGRRAVVDQQG 459
            KK SS   +AS   T  WE+LL+  GG A+A   V  G  + ++ +  A         PRSDKLP K          KG+GNL+ S   NW  L  GG                      XXXX   +GS+RPR+EIG + S+  AT TTP+FF   R +        TG  GKAG  + + A A    G    ++      +V G      ++ H     + K+P SNVLNLAF  QKEE    XXXXXXXX    AKH G  KGRG R G    SEQALTA EKAQYVALDCEMVGVGPGGCRSALARCCLVDW+G+TIYDKHVTPNERVTDFRTFVSGVKANHLKGG+RLRQCQEEVAAILKD+ LVGHAL+NDLKALMMSHPPR+TRDTATYRPYQKAHGKAGGKLRP+SLK+LSQEHLDR IQ+GQHNPAEDA+AAMDLYKLARFEWEKSLSAAGKMRGR++ VDQQG
Sbjct:    4 KKGSSTAKVASSADTTLWEQLLSRGGGQASAAAAVTTGPARAKSSSRPAVPETAGKATPRSDKLPKKKRKAVASADPKGVGNLHKS---NWAMLAAGGXXXXXXXXXXX---XXXXXXXXXXXXXXQQGSERPRAEIGSSNSNVMAT-TTPNFFSVNRNTAVSGSSSTTGVSGKAGKKRIRTAGAGVGIGALTASTNGHAPNHVTGG----TREEHPGANKSTKRPRSNVLNLAFQAQKEEXXXXXXXXXXXX----AKHTGGVKGRGKRGG----SEQALTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGDTIYDKHVTPNERVTDFRTFVSGVKANHLKGGVRLRQCQEEVAAILKDKVLVGHALTNDLKALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYKLARFEWEKSLSAAGKMRGRKSFVDQQG 457          
BLAST of mRNA_L-elsbetiae_contig155.3865.1 vs. uniprot
Match: A0A836CG98_9STRA (RNA exonuclease 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG98_9STRA)

HSP 1 Score: 214 bits (544), Expect = 3.230e-63
Identity = 114/188 (60.64%), Postives = 133/188 (70.74%), Query Frame = 0
Query:  274 QYVALDCEMVGVGPGGCRSALARCCLVDWEGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGG--LRLRQCQEEVAAILKDRTLVGHALSNDLKALMMSHPPRATRDTATYRPYQKAHGKAGGKLRPKSLKILSQEHLDRMIQSGQHNPAEDARAAMDLYKLARFEWEKSLSAA--GKMRGRRAVVDQ 457
            QYVALDCEMVG G  G  SALA+CC+ DW GNT+Y  +V P ERVTDFRTFVSG++A HLKG   + L +CQ+ VAAI K R +VGHAL NDLKALM+SHP    RDTATYRPY++ +    GKL P+SLK L+ E L R IQ G+H+PAEDA AAMDL+KL   EWE SL     GK  G    V Q
Sbjct:   46 QYVALDCEMVGTGVSGRHSALAQCCITDWHGNTLYCSYVRPPERVTDFRTFVSGIRATHLKGADAVTLLECQKAVAAITKGRIIVGHALHNDLKALMLSHPKNMIRDTATYRPYKRPN--RAGKLAPRSLKHLALEFLGREIQGGEHSPAEDAIAAMDLFKLKWAEWETSLKQGRVGKKAGASKPVRQ 231          
BLAST of mRNA_L-elsbetiae_contig155.3865.1 vs. uniprot
Match: W7U6T2_9STRA (RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6T2_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.080e-62
Identity = 105/176 (59.66%), Postives = 130/176 (73.86%), Query Frame = 0
Query:  267 LTAEEKAQYVALDCEMVGVGPGGCRSALARCCLVDWEGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDRTLVGHALSNDLKALMMSHPPRATRDTATYRPYQKAHGKAGGKLRPKSLKILSQEHLDRMIQSGQHNPAEDARAAMDLYKLARFEWEKSL 442
            +T  EK+ YV LDCEMVGVG GG RSALAR  LVD++G  IYD+HV P ER+TDFRT+VSGVKA HLK  L L++C  +VA ++K + +VGHAL NDL+ LM+ HP    RDTA YR Y ++HGK GGKLRP+ LK L+ + L   IQ G+H+ A+DARAAM LY+  R EWEK L
Sbjct:   94 MTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKEL 269          
BLAST of mRNA_L-elsbetiae_contig155.3865.1 vs. uniprot
Match: A0A6G0X6W8_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6W8_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.110e-55
Identity = 96/181 (53.04%), Postives = 130/181 (71.82%), Query Frame = 0
Query:  265 QALTAEEKAQYVALDCEMVGVGPGGCRSALARCCLVDWEGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDRTLVGHALSNDLKALMMSHPPRATRDTATYRPYQKAHGKAGGKLRPKSLKILSQEHLDRMIQSGQHNPAEDARAAMDLYKLARFEWEKSLSAA 445
            Q +   + ++ VA+DCEMVGVG  G RS LARC +VD++GN +YD+HV P E+VTDFRT VSG+++  L+  +   +CQ++V AILKD+ LVGHAL NDL+ALM++HP    RDT  YRPY +     G KL PK+L+ L+QE LD+ IQ+G+H+  EDAR  ++LYK A   WEK+L AA
Sbjct:   66 QTIDWIDTSKIVAMDCEMVGVGLSGTRSVLARCSIVDFDGNVVYDEHVKPMEKVTDFRTHVSGIRSKSLRNAIPFPKCQQDVGAILKDKILVGHALRNDLQALMLTHPKPMIRDTTKYRPYMRRKVN-GTKLLPKALRHLAQEVLDKTIQTGEHDSVEDARTTLELYKKAMVPWEKALKAA 245          
BLAST of mRNA_L-elsbetiae_contig155.3865.1 vs. uniprot
Match: A0A1V9YXD8_9STRA (RNA exonuclease 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXD8_9STRA)

HSP 1 Score: 195 bits (496), Expect = 3.450e-55
Identity = 95/170 (55.88%), Postives = 124/170 (72.94%), Query Frame = 0
Query:  276 VALDCEMVGVGPGGCRSALARCCLVDWEGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDRTLVGHALSNDLKALMMSHPPRATRDTATYRPYQKAHGKAGGKLRPKSLKILSQEHLDRMIQSGQHNPAEDARAAMDLYKLARFEWEKSLSAA 445
            VA+DCEMVGVG  G RS LARC +VD++GN +YDKHV P ERVTDFRT VSG+++ HL+  +   QCQ+EVA I +D+ LVGHAL ND++ALM++HP    RDT  YRPY +     G KL PKSLK L+ E L + IQ+G+H+  EDAR +++LYK A   WEK++ A+
Sbjct:   66 VAMDCEMVGVGSDGARSVLARCSIVDFDGNVVYDKHVKPMERVTDFRTHVSGIRSKHLRDAIPFTQCQQEVAEIFEDKILVGHALRNDMQALMLTHPKGMIRDTTKYRPYMRRKVN-GTKLFPKSLKNLALEVLKKTIQTGEHDSVEDARTSLELYKHAMAPWEKAIKAS 234          
BLAST of mRNA_L-elsbetiae_contig155.3865.1 vs. uniprot
Match: A0A024GQY3_9STRA (RNA exonuclease 4 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GQY3_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.260e-54
Identity = 93/172 (54.07%), Postives = 127/172 (73.84%), Query Frame = 0
Query:  271 EKAQYVALDCEMVGVGPGGCRSALARCCLVDWEGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDRTLVGHALSNDLKALMMSHPPRATRDTATYRPYQKAHGKAGGKLRPKSLKILSQEHLDRMIQSGQHNPAEDARAAMDLYKLARFEWEKSL 442
            +K+  +A+DCEMVGVG  G + ALARC ++D++GN ++D+ V+P E+VTD+RT VSG++    K  +   QC +EV A+LKD+ +VGHAL ND +ALM+SHP R TRDTA YRPY + + K G KL P+SLK L+ E L R IQ G+H+  EDARAA++LYK  +F+WEK L
Sbjct:   89 KKSDILAMDCEMVGVGTDGRQDALARCSIIDFDGNVLFDRTVSPVEKVTDYRTRVSGIRPRSFKNAISFSQCLKEVGALLKDKIVVGHALKNDFQALMLSHPKRQTRDTARYRPYMR-YRKNGTKLLPRSLKTLAAEFLKRSIQEGEHDSVEDARAALELYKRQQFDWEKYL 259          
BLAST of mRNA_L-elsbetiae_contig155.3865.1 vs. uniprot
Match: A0A6U3UEZ7_9STRA (RNA exonuclease 4 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UEZ7_9STRA)

HSP 1 Score: 191 bits (485), Expect = 4.800e-53
Identity = 97/194 (50.00%), Postives = 131/194 (67.53%), Query Frame = 0
Query:  257 AGGRRGSEQALTAEEKAQYVALDCEMVGVGPGGCRSALARCCLVDWEGNTIYDKHVTPNERVTDFRTFVSGVKANHLK----GGLRLRQCQEEVAAILKDRTLVGHALSNDLKALMMSHPPRATRDTATYRPYQKAHGKAGGKLRPKSLKILSQEHLDR--MIQSGQHNPAEDARAAMDLYKLARFEWEKSLSA 444
            A  R+ +E+ +  EEKA+YVALDCEMVG+G  G  S LAR  LVDW GN + D  V   +RVTDFRT VSG+KA H+K      +  + C+ +V AILK++ LVGHAL ND  ALMM+HP    RDTA Y+P+  + G+ GGKLRP+ L+ L+++ L R   +Q   H+  +DA+AAMDLYK+ R +WEK + +
Sbjct:  145 AAARQAAEEKIPPEEKAKYVALDCEMVGIGTDGKTSCLARASLVDWYGNVLLDTFVLVPDRVTDFRTHVSGIKAKHIKETNQNAMTPKDCRMKVGAILKNKILVGHALRNDFAALMMNHPAADIRDTAKYKPFMVSRGRNGGKLRPRKLRDLTKQFLKRDIQVQGESHDSIDDAKAAMDLYKVVRVQWEKDIQS 338          
BLAST of mRNA_L-elsbetiae_contig155.3865.1 vs. uniprot
Match: A0A7S1YYA6_TRICV (RNA exonuclease 4 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YYA6_TRICV)

HSP 1 Score: 186 bits (471), Expect = 2.620e-52
Identity = 90/180 (50.00%), Postives = 126/180 (70.00%), Query Frame = 0
Query:  266 ALTAEEKAQYVALDCEMVGVGPGGCRSALARCCLVDWEGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDRTLVGHALSNDLKALMMSHPPRATRDTATYRPYQKAHGKAGGKLRPKSLKILSQEHLDRMIQSG--QHNPAEDARAAMDLYKLARFEWEKSLS 443
            A+   E+++YVA+DCEMVG+G  G  SALAR  LVDW+G  + D  V   +RVTDFRT+VSGV++  ++  +    C+E+VA ILK + LVGH+L NDL AL++ HP    RDTA+YRPY K  G+ GGK+RP+ L+ L++E+L   IQ    +H+  +DARAAM+LYK AR  WE+ ++
Sbjct:   60 AVPEPERSRYVAVDCEMVGIGSAGRTSALARTSLVDWDGKVLLDTFVRVPDRVTDFRTWVSGVRSKDIRNAMEPEDCREKVAEILKGKVLVGHSLKNDLSALLLDHPRGDRRDTASYRPYMKPSGRGGGKMRPRRLRDLAEEYLGISIQGEGEEHSSIDDARAAMELYKFARTRWEREVA 239          
BLAST of mRNA_L-elsbetiae_contig155.3865.1 vs. uniprot
Match: A0A485LPN0_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPN0_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.780e-52
Identity = 92/181 (50.83%), Postives = 126/181 (69.61%), Query Frame = 0
Query:  265 QALTAEEKAQYVALDCEMVGVGPGGCRSALARCCLVDWEGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDRTLVGHALSNDLKALMMSHPPRATRDTATYRPYQKAHGKAGGKLRPKSLKILSQEHLDRMIQSGQHNPAEDARAAMDLYKLARFEWEKSLSAA 445
            Q +   + A  VA+DCEMVGVG GG RS LARC +V ++G  +YD+HV P E+VTDFRT VSG+++  L+  +   +CQ +V  +LKD+ LVGHA+ NDL+ALM++HP    RDT  YRPY +     G KL PK+L+ L+QE LD+ IQ+G+H+  EDAR  ++LYK A   WEK+L A+
Sbjct:   83 QTIDWIDTALIVAMDCEMVGVGVGGTRSVLARCSIVGFDGTVLYDEHVKPLEKVTDFRTHVSGIRSKSLRNAIPFAKCQNDVGELLKDKILVGHAVRNDLQALMLTHPKPMLRDTTKYRPYMRRRMN-GTKLLPKALRHLAQEVLDKTIQTGEHDSVEDARTTLELYKRAMVPWEKALKAS 262          
BLAST of mRNA_L-elsbetiae_contig155.3865.1 vs. uniprot
Match: K3WDF0_GLOUD (RNA exonuclease 4 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDF0_GLOUD)

HSP 1 Score: 189 bits (479), Expect = 3.350e-52
Identity = 98/180 (54.44%), Postives = 124/180 (68.89%), Query Frame = 0
Query:  265 QALTAE--EKAQYVALDCEMVGVGPGGCRSALARCCLVDWEGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDRTLVGHALSNDLKALMMSHPPRATRDTATYRPYQKAHGKAGGKLRPKSLKILSQEHLDRMIQSGQHNPAEDARAAMDLYKLARFEWEKSL 442
            Q  TAE  + AQ +A+DCEMVGVG  G  S LARC +VD++GN +YDKHV P E+VTDFRT VSG++++ LK  +   QC +EV  I+KD+ +VGHAL ND +ALM + P    RDTA YRPY +     G KL PKSLK L++E L   IQSG+H+  EDARA + LYK  +F WEK L
Sbjct:   94 QQKTAEWIDNAQILAMDCEMVGVGLSGKTSVLARCSIVDYDGNVVYDKHVRPVEKVTDFRTHVSGIRSHTLKNAIPFAQCLKEVGKIMKDKIIVGHALKNDFQALMFTPPKNMIRDTARYRPYMRRKMN-GTKLYPKSLKNLAEEVLGLQIQSGEHDSVEDARATLQLYKNEQFAWEKYL 272          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig155.3865.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAZ6_ECTSI8.850e-14959.83RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A836CG98_9STRA3.230e-6360.64RNA exonuclease 4 n=1 Tax=Tribonema minus TaxID=30... [more]
W7U6T2_9STRA3.080e-6259.66RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A6G0X6W8_9STRA1.110e-5553.04RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches Ta... [more]
A0A1V9YXD8_9STRA3.450e-5555.88RNA exonuclease 4 n=1 Tax=Thraustotheca clavata Ta... [more]
A0A024GQY3_9STRA1.260e-5454.07RNA exonuclease 4 n=2 Tax=Albugo candida TaxID=653... [more]
A0A6U3UEZ7_9STRA4.800e-5350.00RNA exonuclease 4 n=3 Tax=Ditylum brightwellii Tax... [more]
A0A7S1YYA6_TRICV2.620e-5250.00RNA exonuclease 4 (Fragment) n=1 Tax=Trieres chine... [more]
A0A485LPN0_9STRA2.780e-5250.83RNA exonuclease 4 n=1 Tax=Aphanomyces stellatus Ta... [more]
K3WDF0_GLOUD3.350e-5254.44RNA exonuclease 4 n=1 Tax=Globisporangium ultimum ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 274..440
e-value: 4.7E-31
score: 119.2
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 276..431
e-value: 1.4E-6
score: 28.9
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 270..452
e-value: 1.3E-48
score: 166.9
IPR034920RNA exonuclease 4PANTHERPTHR12801:SF45RNA EXONUCLEASE 4coord: 121..445
NoneNo IPR availablePANTHERPTHR12801EXONUCLEASEcoord: 121..445
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 275..437

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig155contigL-elsbetiae_contig155:2147..5191 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig155.3865.1mRNA_L-elsbetiae_contig155.3865.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig155 1062..5297 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig155.3865.1 ID=prot_L-elsbetiae_contig155.3865.1|Name=mRNA_L-elsbetiae_contig155.3865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=472bp
MKRKKGKKNSSGKTIASGTSTNAWEKLLAGGAAAANKTVNAGTEQVQAGT
AVAPRSDKLPTKTKGLGNLYTSMSNNWEHLLTGGKATTAAAGAGAGNGHV
SDKSKRKKAKSGSKGSKRPRSEIGQAGSSDSATPTTPDFFPAKRVSNGVQ
PQPVTGPGGKAGSMKRKRASADSADGNAKDTSVKDIDTYVPGTKHKQQKQ
HHYSGAPNWKKPGSNVLNLAFLVQKEEAAAAAAAAATGAGGNAAKHRGRD
KGRGSRAGGRRGSEQALTAEEKAQYVALDCEMVGVGPGGCRSALARCCLV
DWEGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAIL
KDRTLVGHALSNDLKALMMSHPPRATRDTATYRPYQKAHGKAGGKLRPKS
LKILSQEHLDRMIQSGQHNPAEDARAAMDLYKLARFEWEKSLSAAGKMRG
RRAVVDQQGRGAPEALGAGST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR036397RNaseH_sf
IPR034920Rex4
IPR012337RNaseH-like_sf