mRNA_L-elsbetiae_contig155.3866.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig155.3866.1 vs. uniprot
Match: A0A6H5KNL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNL5_9PHAE) HSP 1 Score: 347 bits (890), Expect = 7.010e-100 Identity = 207/371 (55.80%), Postives = 255/371 (68.73%), Query Frame = 3 Query: 183 GKRKFDFDQTNFEAFPQPNYQKDAYWDSITPEQLVWNESFPAIVVPEERHFYTPCDKPQDGVVAYGPSAKGVQPAKKRYVIIQYFPLCLTCHDKPKTPYDCVNGKHVESVLPYNTITAGK-ASRGSRLGADDKWADTDRHFEKVQRSRGGKNLTKRNWDATMDHVHKFLARALERRAELAAQALVESQLAEEELEXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXPGA---AARPQSQPIVYQKGLPLAPGDKILYWDRTKRTGAADGRMEATILEIRKKKLAREENLGLLVLDNHQIVLDDWVIQRFVKDRETGEVSLAREGCMVKDHTLKKGKVKGSDPQKNERMATLVSDFRKEMTAYGAGDQLRSA 1283 GK K FDQT E FPQ Q ++YWDSITP+QLVW + PAIVVPE H + P D V+AYGP AK V P++ R+VI+Q+ PLC+TCH KP+TPY CV GK VESVLPYNT+ AGK A + LG +D WAD D HF K + K L K+NWD T++H KFL+RALE +A+ A + XXXXXXX XXXXXXXXXXXXXXXX GA + S+P+ ++GLPLAPGD+I YWDRTK G A R EATILEIR KK A+E N+ LLVLDNHQ+VL+DWVIQR++KD +TG + L G V+ + LK+GK++G D +++ERM TLV FRK +TAYGAGD LR+A Sbjct: 105 GKSKPKFDQTKLEDFPQVTDQINSYWDSITPDQLVWCQDCPAIVVPERLHIFAKVKAPPDSVMAYGPRAKSVTPSRNRFVILQFLPLCMTCHAKPETPYTCVRGKPVESVLPYNTVMAGKKAGQDRALGPEDSWADADYHFRKAKGK--SKQLAKQNWDVTLEHAQKFLSRALELKAKKAQEDXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXSAGEDGGEGADDDTPKYPSKPVQMERGLPLAPGDRIFYWDRTKVVGLASSRREATILEIRGKKAAKEANVELLVLDNHQVVLNDWVIQRYIKDEDTGGMQLDYRGAEVQHYKLKRGKLEGVDQRRHERMETLVDGFRKSITAYGAGDHLRNA 468
BLAST of mRNA_L-elsbetiae_contig155.3866.1 vs. uniprot
Match: D8LAZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ5_ECTSI) HSP 1 Score: 313 bits (802), Expect = 6.610e-88 Identity = 195/365 (53.42%), Postives = 239/365 (65.48%), Query Frame = 3 Query: 201 FDQTNFEAFPQPNYQKDAYWDSITPEQLVWNESFPAIVVPEERHFYTPCDKPQDGVVAYGPSAKGVQPAKKRYVIIQYFPLCLTCHDKPKTPYDCVNGKHVESVLPYNTITAGK-ASRGSRLGADDKWADTDRHFEKVQRSRGGKNLTKRNWDATMDHVHKFLARALERRAELAAQALVESQLAEEELEXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXPGA---AARPQSQPIVYQKGLPLAPGDKILYWDRTKRTGAADGRMEATILEIRKKKLAREENLGLLVLDNHQIVLDDWVIQRFVKDRETGEVSLAREGCMVKDHTLKKGKVKGSDPQKNERMATLVSDFRKEMTAYGAGDQLRSA 1283 FDQT E FPQ PAIVVPE H + P DGV+AYGP AK V P++ R+VI+Q+ PLCLTCH KP+TPY CV GK VESVLPYNT+ AGK A + LG +D WAD D HF K + K L+K+NWD T++H KFL+RALE +A+ + +EE XXXXXXX XXXXXXXXXXXXXXX GA + S+ + ++GLPLAPGD+I YWDRTK G A R EATILEIR KK A+E N+ LLVLDNHQ+VL+DWVIQR++KD +TGE+ L G V + LK+GK++G D +++ERM TLV FRK +TAYGAGDQLR+A Sbjct: 108 FDQTELEVFPQ---------------------DCPAIVVPEHLHIFAKVKAPPDGVMAYGPRAKSVTPSRNRFVILQFLPLCLTCHAKPETPYACVRGKPVESVLPYNTVMAGKKAGQDRALGPEDSWADADYHFRKAKGK--SKQLSKQNWDVTLEHAQKFLSRALELKAKKVQE--------DEEXXXXXXXXXXXXXXXXXXXXXXXXXSSAGEDGGEGADDDIPKYSSKSVQMERGLPLAPGDRIFYWDRTKIVGLASSRREATILEIRGKKAAKEANVELLVLDNHQVVLNDWVIQRYIKDEDTGEMQLDYRGAEVHHYKLKRGKLEGVDQRRHERMETLVDGFRKSITAYGAGDQLRNA 441 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig155.3866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig155.3866.1 >prot_L-elsbetiae_contig155.3866.1 ID=prot_L-elsbetiae_contig155.3866.1|Name=mRNA_L-elsbetiae_contig155.3866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=755bp MVDGEDGPSGAAPAKASADEEADDETADQTAAKNADTANDDGGKRKFDFDback to top mRNA from alignment at L-elsbetiae_contig155:5589..14858+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig155.3866.1 ID=mRNA_L-elsbetiae_contig155.3866.1|Name=mRNA_L-elsbetiae_contig155.3866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9270bp|location=Sequence derived from alignment at L-elsbetiae_contig155:5589..14858+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig155:5589..14858+ >mRNA_L-elsbetiae_contig155.3866.1 ID=mRNA_L-elsbetiae_contig155.3866.1|Name=mRNA_L-elsbetiae_contig155.3866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4530bp|location=Sequence derived from alignment at L-elsbetiae_contig155:5589..14858+ (Laminarionema elsbetiae ELsaHSoW15)back to top |