mRNA_L-elsbetiae_contig15499.3864.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15499.3864.1
Unique NamemRNA_L-elsbetiae_contig15499.3864.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15499.3864.1 vs. uniprot
Match: D7G9J7_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9J7_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 2.220e-74
Identity = 149/237 (62.87%), Postives = 162/237 (68.35%), Query Frame = 1 
Query:    1 FALIVELVVVVVIGDDGRVEACRLSPGDHAATVALAAISIMFGLFTCCMACDQYQVASTNQTKIDRLKGEVHDSVEG-SNEVFGGEDGQKCRCHWLLPLPARFPR-DAAARIFGYCTGTGSRGGGGCRSGRGSGSIRGEAQALVGGRGSLGGXXXXXXXXAVSELELAENGGSGFVSKSNGHVAAXXXXXXXXXXRNGDVFPAPEAELGLRHSARQSLDERLEAMPEADSGSEGEFR 705
            FAL++ELVV+V+IGDD R E CRLSP DHAATVAL AISIMFGLFTCCMACDQ QVASTNQTKIDRLKGEVHDSV+G +NEVFGG DGQKCRCHW+LPLPARFP  DAAARIFGYCTG   RG    R G G      + +AL  G G                                     XXXXXXXXXX  GD++  PEAE GLRHSA +SL ER+ AMPEAD GSEGEFR
Sbjct:  237 FALMIELVVMVLIGDDRRSEECRLSPSDHAATVALTAISIMFGLFTCCMACDQCQVASTNQTKIDRLKGEVHDSVDGGANEVFGGMDGQKCRCHWVLPLPARFPEGDAAARIFGYCTGRRGRG----RDGGG------QTRALASGGGDX-------------------------------XXXXXXXXXXXXXXXKGDLYATPEAEAGLRHSAERSLGERVAAMPEADCGSEGEFR 432
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BLAST of mRNA_L-elsbetiae_contig15499.3864.1 vs. uniprot
Match: A0A7S2MMC5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MMC5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.900e-16
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:  115 SIMFGLFTCCMACDQYQVASTNQTKIDRLKGEVHDSVEGSNEVFGG--EDGQKCRCH-WLLPLPARFPRDAAARIFGY 339
            +I+FGLFT CM CDQ  V ++N+TKIDRLKGE H      NE+FG   + G+ C C  WLLP    FPRD    + G+
Sbjct:   41 AILFGLFTLCMLCDQCNVLTSNETKIDRLKGEKHQQPTVVNEIFGSVSDRGRICTCLVWLLPFKVSFPRDMRDEVLGF 118
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BLAST of mRNA_L-elsbetiae_contig15499.3864.1 vs. uniprot
Match: M4B961_HYAAE (Palmitoyltransferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B961_HYAAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.320e-15
Identity = 43/81 (53.09%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:   97 VALAAISIMFGLFTCCMACDQYQVASTNQTKIDRLKGEVHDSVEGSNEVFGGEDGQKCRCHWLLPLPARFPRDAAARIFGY 339
            V L   S++FGLFT CM CDQY V +T  T+IDRLKGEV  S+ G  EVFGG D  K   HWLLP+   FP     ++ GY
Sbjct:  202 VCLIMESVLFGLFTMCMMCDQYSVITTGTTQIDRLKGEVSASL-GLREVFGGADC-KFALHWLLPVNIWFPSSVKNQVLGY 280
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BLAST of mRNA_L-elsbetiae_contig15499.3864.1 vs. uniprot
Match: A0A1V9ZXN1_9STRA (Palmitoyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXN1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.100e-14
Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:   58 EACRLSPGDHAATVALAAISIMFGLFTCCMACDQYQVASTNQTKIDRLKGEVHDSVEGSNEVFGGEDGQKCRCHWLLPLPARFPRDAAARIFGY 339
            E C  +   H   + L   S++FGLFT CM CDQY V +T  T+IDRLKGE  +++ G  EVFGG    K   HW LP+   FP     ++ GY
Sbjct:  191 ETCATTGAVH--VICLCLESVLFGLFTMCMMCDQYSVITTGTTQIDRLKGETSENL-GIREVFGGMSN-KISLHWFLPVNIAFPESVKEQLLGY 280
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BLAST of mRNA_L-elsbetiae_contig15499.3864.1 vs. uniprot
Match: A0A835YRU2_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU2_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.700e-14
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:  103 LAAISIMFGLFTCCMACDQYQVASTNQTKIDRLKGEVHDSVEGSNEVFGGEDGQKCRCHWLLPLPARFPRDAAARIFGY 339
            L A +++FG+FT CMA DQ++V S+ QT+IDRLKGE H +    +EVFGG  G++CR  WLLP    F  DA   + G+
Sbjct:  230 LVAEAVLFGMFTFCMALDQWEVLSSGQTQIDRLKGEQHATSADVHEVFGG--GKRCRVDWLLPTRPVFCADAWEEVMGH 306
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BLAST of mRNA_L-elsbetiae_contig15499.3864.1 vs. uniprot
Match: A0A5D6YBN5_9STRA (Palmitoyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBN5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.430e-13
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:  115 SIMFGLFTCCMACDQYQVASTNQTKIDRLKGEVHDSVEGSNEVFGGEDGQKCRCHWLLPLPARFPRDAAARIFGY 339
            +++FGLFT CM CDQY V +T  T+IDRLKGEV DS+ G  EVFGG   Q    +WLLP+   FP     +I GY
Sbjct:  209 AVLFGLFTLCMMCDQYSVITTGATQIDRLKGEVGDSL-GVREVFGGAS-QGFSLNWLLPVSIWFPTSLKNQILGY 281
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BLAST of mRNA_L-elsbetiae_contig15499.3864.1 vs. uniprot
Match: A0A6H5JZE7_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZE7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.280e-13
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:  115 SIMFGLFTCCMACDQYQVASTNQTKIDRLKGEVHDSVEGS-NEVFGGE--DGQKCRCHWLLPLPARFPRDAAARIFGY 339
            +++FGLFT CM CDQ++V STNQT+IDRLKGE H       NE+FGG   +G + R  + LP    FP D    + GY
Sbjct:  147 AMLFGLFTMCMVCDQWEVVSTNQTQIDRLKGETHSQPALEINELFGGSSRNGGRFRLDFFLPTRVSFPADIWEEVMGY 224
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BLAST of mRNA_L-elsbetiae_contig15499.3864.1 vs. uniprot
Match: F0W2S2_9STRA (Palmitoyltransferase n=2 Tax=Albugo TaxID=65356 RepID=F0W2S2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.060e-12
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   97 VALAAISIMFGLFTCCMACDQYQVASTNQTKIDRLKGEVHDSVEGSNEVFGGEDGQKCRCHWLLPLPARFPRDAAARIFGY 339
            V L   S++FGLFT CM CDQY V +T  T+IDRLKG+   +  G  EVFGG D       WLLP+   FP+    R+ GY
Sbjct:  195 VFLVLESMLFGLFTVCMMCDQYSVITTGATQIDRLKGDYSQNF-GVREVFGGAD-TSFSIDWLLPINIWFPKTEQVRLLGY 273
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BLAST of mRNA_L-elsbetiae_contig15499.3864.1 vs. uniprot
Match: A0A7S2IJ32_9STRA (Palmitoyltransferase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJ32_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.380e-9
Identity = 42/92 (45.65%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:   97 VALAAISIMFGLFTCCMACDQYQVASTNQTKIDRLKGEVHDS---VE-GSNEVFGGEDGQKC-----RCHWLLPLP-ARFPRDAAARIFGYC 342
            V L   +++FGLFTCCM  DQ+ V  TN T IDRLKGE+      VE G NEVFG   G+       R  WL P+  A FP      I G+C
Sbjct:  383 VGLVVEALLFGLFTCCMMVDQWDVVMTNVTHIDRLKGEMGLGGRIVETGINEVFGTGHGRTASSSCFRADWLSPIHRACFPASIKDEIMGFC 474
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BLAST of mRNA_L-elsbetiae_contig15499.3864.1 vs. uniprot
Match: A0A7S4I934_9STRA (Palmitoyltransferase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I934_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.190e-8
Identity = 42/111 (37.84%), Postives = 51/111 (45.95%), Query Frame = 1 
Query:   37 IGDDGRVEACRLSPGDHAATVALAAISIMFGLFTCCMACDQYQVASTNQTKIDRLKGEVHDSV------EGSNEVFGGEDGQKC--RCHWLLP-LPARFPRDAAARIFGYC 342
            IG   R   C   P      + L   +++FGLFTCCM  DQ+ V  TN T IDRLKGE   S       +  NEVFG   G     R  W+ P +   FP      I G+C
Sbjct:  314 IGMHSRHSHCLDEPTHILNLIGLMVEALLFGLFTCCMMIDQWDVVMTNVTHIDRLKGETGFSFLDDQRRKDVNEVFGTGRGSTSHFRPDWMSPFVRVCFPSSLQDEIMGFC 424
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15499.3864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G9J7_ECTSI2.220e-7462.87Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S2MMC5_9STRA8.900e-1650.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
M4B961_HYAAE8.320e-1553.09Palmitoyltransferase n=1 Tax=Hyaloperonospora arab... [more]
A0A1V9ZXN1_9STRA2.100e-1443.62Palmitoyltransferase n=1 Tax=Thraustotheca clavata... [more]
A0A835YRU2_9STRA6.700e-1449.37Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A5D6YBN5_9STRA1.430e-1353.33Palmitoyltransferase n=1 Tax=Pythium brassicum Tax... [more]
A0A6H5JZE7_9PHAE5.280e-1348.72Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
F0W2S2_9STRA3.060e-1248.15Palmitoyltransferase n=2 Tax=Albugo TaxID=65356 Re... [more]
A0A7S2IJ32_9STRA2.380e-945.65Palmitoyltransferase n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4I934_9STRA6.190e-837.84Palmitoyltransferase n=2 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15499contigL-elsbetiae_contig15499:2871..3920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score244.2
Seed ortholog evalue6.1e-62
Seed eggNOG ortholog2880.D7G9J7
KEGG koko:K20029
KEGG TC9.B.37.2
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
EC2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-00_009110.1
Exons2
Model size708
Cds size708
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.480466-CDS-L-elsbetiae_contig15499:2870..33811622815632.480466-CDS-L-elsbetiae_contig15499:2870..3381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15499 2871..3381 -
1691683003.2375581-CDS-L-elsbetiae_contig15499:2870..33811691683003.2375581-CDS-L-elsbetiae_contig15499:2870..3381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15499 2871..3381 -
1622815632.4906359-CDS-L-elsbetiae_contig15499:3723..39201622815632.4906359-CDS-L-elsbetiae_contig15499:3723..3920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15499 3724..3920 -
1691683003.2515347-CDS-L-elsbetiae_contig15499:3723..39201691683003.2515347-CDS-L-elsbetiae_contig15499:3723..3920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15499 3724..3920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15499.3864.1prot_L-elsbetiae_contig15499.3864.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15499 2871..3920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15499.3864.1

>prot_L-elsbetiae_contig15499.3864.1 ID=prot_L-elsbetiae_contig15499.3864.1|Name=mRNA_L-elsbetiae_contig15499.3864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
FALIVELVVVVVIGDDGRVEACRLSPGDHAATVALAAISIMFGLFTCCMA
CDQYQVASTNQTKIDRLKGEVHDSVEGSNEVFGGEDGQKCRCHWLLPLPA
RFPRDAAARIFGYCTGTGSRGGGGCRSGRGSGSIRGEAQALVGGRGSLGG
GGGGGGVAAVSELELAENGGSGFVSKSNGHVAAGAGGGGGGGGRNGDVFP
APEAELGLRHSARQSLDERLEAMPEADSGSEGEFR*
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mRNA from alignment at L-elsbetiae_contig15499:2871..3920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15499.3864.1 ID=mRNA_L-elsbetiae_contig15499.3864.1|Name=mRNA_L-elsbetiae_contig15499.3864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig15499:2871..3920- (Laminarionema elsbetiae ELsaHSoW15)
TTTGCCTTGATTGTCGAGCTGGTGGTGGTGGTGGTTATCGGCGACGACGG
GCGAGTGGAGGCGTGCCGCCTCTCGCCAGGCGACCACGCCGCCACGGTGG
CGCTCGCGGCCATATCCATCATGTTCGGCCTCTTCACGTGCTGCATGGCC
TGCGACCAGTACCAAGTGGCGTCCACGAACCAGACCAAGATCGACAGGTG
TGTCTGCTGCACGAGTGATGCGCGTTGGTTTTAAAAGTGCCTGAGAAATC
AGCAGCCCCCCCCCCCCAACCCCCCCATGTCCTCCTAAATATTTGGAAAT
CGATTCCCCACCAAATTATATTATTTTGATGAGGCGTGCGTCGTAAAAAT
CGTTGGTCGAATCAACGACTACATGCAACGGATGGGGCGCAGCGAGCTGC
GTGCGCCCAGACGCGCTTCCATTGCAGGGGGCTTAGGTGGGATGGGTGCA
TGCACTGCTGCTGTCGGCGTCTATTACATAAACGTCGAACCAAATCCTTC
CACATCTACGCACTTTCGCTCTACCACCCCCCGCCGCAGGCTCAAGGGCG
AAGTGCACGACTCCGTGGAAGGCTCGAACGAGGTGTTTGGCGGAGAGGAC
GGGCAGAAGTGTCGCTGCCATTGGCTCCTGCCGCTGCCGGCGCGTTTCCC
TCGCGATGCCGCGGCTAGAATATTTGGCTATTGCACCGGCACCGGCAGCC
GGGGCGGCGGCGGCTGCAGGAGCGGCCGAGGGAGCGGGAGTATTAGAGGC
GAGGCGCAGGCTTTAGTGGGTGGTAGGGGAAGCCTTGGTGGCGGCGGTGG
CGGTGGCGGCGTGGCGGCGGTGAGCGAGCTGGAATTAGCGGAGAACGGCG
GCTCGGGGTTCGTTTCGAAAAGCAACGGGCACGTTGCGGCAGGTGCCGGC
GGCGGCGGCGGCGGCGGTGGCAGAAATGGGGATGTTTTTCCTGCTCCAGA
GGCCGAGTTGGGCTTGAGACACTCGGCGCGGCAGAGTCTGGACGAGCGGT
TGGAAGCGATGCCCGAGGCAGACTCGGGGTCCGAGGGAGAGTTTCGCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15499:2871..3920-

>mRNA_L-elsbetiae_contig15499.3864.1 ID=mRNA_L-elsbetiae_contig15499.3864.1|Name=mRNA_L-elsbetiae_contig15499.3864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig15499:2871..3920- (Laminarionema elsbetiae ELsaHSoW15)
TTTGCCTTGATTGTCGAGCTGGTGGTGGTGGTGGTTATCGGCGACGACGG
GCGAGTGGAGGCGTGCCGCCTCTCGCCAGGCGACCACGCCGCCACGGTGG
CGCTCGCGGCCATATCCATCATGTTCGGCCTCTTCACGTGCTGCATGGCC
TGCGACCAGTACCAAGTGGCGTCCACGAACCAGACCAAGATCGACAGTTT
GCCTTGATTGTCGAGCTGGTGGTGGTGGTGGTTATCGGCGACGACGGGCG
AGTGGAGGCGTGCCGCCTCTCGCCAGGCGACCACGCCGCCACGGTGGCGC
TCGCGGCCATATCCATCATGTTCGGCCTCTTCACGTGCTGCATGGCCTGC
GACCAGTACCAAGTGGCGTCCACGAACCAGACCAAGATCGACAGGCTCAA
GGGCGAAGTGCACGACTCCGTGGAAGGCTCGAACGAGGTGTTTGGCGGAG
AGGACGGGCAGAAGTGTCGCTGCCATTGGCTCCTGCCGCTGCCGGCGCGT
TTCCCTCGCGATGCCGCGGCTAGAATATTTGGCTATTGCACCGGCACCGG
CAGCCGGGGCGGCGGCGGCTGCAGGAGCGGCCGAGGGAGCGGGAGTATTA
GAGGCGAGGCGCAGGCTTTAGTGGGTGGTAGGGGAAGCCTTGGTGGCGGC
GGTGGCGGTGGCGGCGTGGCGGCGGTGAGCGAGCTGGAATTAGCGGAGAA
CGGCGGCTCGGGGTTCGTTTCGAAAAGCAACGGGCACGTTGCGGCAGGTG
CCGGCGGCGGCGGCGGCGGCGGTGGCAGAAATGGGGATGTTTTTCCTGCT
CCAGAGGCCGAGTTGGGCTTGAGACACTCGGCGCGGCAGAGTCTGGACGA
GCGGTTGGAAGCGATGCCCGAGGCAGACTCGGGGTCCGAGGGAGAGTTTC
GCTAGGCTCAAGGGCGAAGTGCACGACTCCGTGGAAGGCTCGAACGAGGT
GTTTGGCGGAGAGGACGGGCAGAAGTGTCGCTGCCATTGGCTCCTGCCGC
TGCCGGCGCGTTTCCCTCGCGATGCCGCGGCTAGAATATTTGGCTATTGC
ACCGGCACCGGCAGCCGGGGCGGCGGCGGCTGCAGGAGCGGCCGAGGGAG
CGGGAGTATTAGAGGCGAGGCGCAGGCTTTAGTGGGTGGTAGGGGAAGCC
TTGGTGGCGGCGGTGGCGGTGGCGGCGTGGCGGCGGTGAGCGAGCTGGAA
TTAGCGGAGAACGGCGGCTCGGGGTTCGTTTCGAAAAGCAACGGGCACGT
TGCGGCAGGTGCCGGCGGCGGCGGCGGCGGCGGTGGCAGAAATGGGGATG
TTTTTCCTGCTCCAGAGGCCGAGTTGGGCTTGAGACACTCGGCGCGGCAG
AGTCTGGACGAGCGGTTGGAAGCGATGCCCGAGGCAGACTCGGGGTCCGA
GGGAGAGTTTCGCTAG
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