mRNA_L-elsbetiae_contig15491.3861.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15491.3861.1
Unique NamemRNA_L-elsbetiae_contig15491.3861.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15491.3861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15491contigL-elsbetiae_contig15491:3227..4114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size418
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.30501-CDS-L-elsbetiae_contig15491:3227..35531622815632.30501-CDS-L-elsbetiae_contig15491:3227..3553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15491 3228..3553 -
1691683003.1710165-CDS-L-elsbetiae_contig15491:3227..35531691683003.1710165-CDS-L-elsbetiae_contig15491:3227..3553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15491 3228..3553 -
1622815632.3152056-CDS-L-elsbetiae_contig15491:4023..41141622815632.3152056-CDS-L-elsbetiae_contig15491:4023..4114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15491 4024..4114 -
1691683003.179911-CDS-L-elsbetiae_contig15491:4023..41141691683003.179911-CDS-L-elsbetiae_contig15491:4023..4114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15491 4024..4114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15491.3861.1prot_L-elsbetiae_contig15491.3861.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15491 3228..4114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15491.3861.1

>prot_L-elsbetiae_contig15491.3861.1 ID=prot_L-elsbetiae_contig15491.3861.1|Name=mRNA_L-elsbetiae_contig15491.3861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
RWQQQRYRGEGAAAVACGRASRGTRCGGSCGSGAQPVSIYMRRRHPLRGR
RLRGRRLRERRLRRRRSRDQRDPRHLSVYAGQRIWHGAGAAAGAGAGDRR
PCGGVGEPRRRPRYPLRHRHRHLLACRGTAPMRPLSPLL
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mRNA from alignment at L-elsbetiae_contig15491:3227..4114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15491.3861.1 ID=mRNA_L-elsbetiae_contig15491.3861.1|Name=mRNA_L-elsbetiae_contig15491.3861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig15491:3227..4114- (Laminarionema elsbetiae ELsaHSoW15)
CGGTGGCAGCAGCAGCGGTATCGCGGGGAGGGTGCCGCTGCCGTCGCTTG
CGGAAGAGCAAGCCGCGGTACCAGATGTGGAGGCTCTTGCGGTAAGTGTA
GGAAAGGGTTAGGGTACCGTAGGTGACACAAGATACCACACCCCCTGGAC
CGAATTTTAGATCTCCATTAATCCGTAACAAAGACGGCGCGAGCACTAAA
CGACAGATTTTCGAACAGCCCTCAACTAGATCTTTCCAACGCCACCCCTT
CCGGCGCTGGCACCCTCTTCGTTACGGAGTAATGCAGCTCTAGAATTCGG
TCCGGGGGGTGTGGTATCTTGTGTCGCCTACAATACGGTAGCCCAACAGC
TGACTTGGGCTGATTGCGTTGTCGTGTGTTGGGTACTCGTTGAGCTGGAG
TTGTGCTTTTTGGCACAGACGGGGGGGGGGGGTTCAGTTGAGGCTTGCTT
CTGATTTTGTAGGCGTTTTATATCAAGCGGCCCCTTACATATCTCTTTTT
TGTTTTATAAATATACATACAAACGTGCCCTGCTGTTGCCTACCGGTGGT
ACCCACAACAGGCTCTGGGGCCCAGCCCGTGTCGATCTACATGCGCCGGC
GGCACCCCCTCCGAGGAAGGCGCCTCCGAGGAAGGCGCCTCCGAGAAAGA
CGCCTCCGTCGTCGGCGTTCCCGGGATCAGCGGGATCCCCGGCACCTTTC
CGTGTACGCCGGACAACGTATTTGGCATGGAGCTGGAGCTGCAGCCGGAG
CTGGAGCTGGAGACCGCCGGCCTTGCGGAGGGGTCGGTGAGCCCCGACGC
CGCCCACGATATCCGCTACGACACCGACACCGACACCTACTAGCATGTCG
CGGGACAGCTCCCATGCGCCCACTATCCCCACTACTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15491:3227..4114-

>mRNA_L-elsbetiae_contig15491.3861.1 ID=mRNA_L-elsbetiae_contig15491.3861.1|Name=mRNA_L-elsbetiae_contig15491.3861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig15491:3227..4114- (Laminarionema elsbetiae ELsaHSoW15)
CGGTGGCAGCAGCAGCGGTATCGCGGGGAGGGTGCCGCTGCCGTCGCTTG
CGGAAGAGCAAGCCGCGGTACCAGATGTGGAGGCTCTTGCGCGGTGGCAG
CAGCAGCGGTATCGCGGGGAGGGTGCCGCTGCCGTCGCTTGCGGAAGAGC
AAGCCGCGGTACCAGATGTGGAGGCTCTTGCGGCTCTGGGGCCCAGCCCG
TGTCGATCTACATGCGCCGGCGGCACCCCCTCCGAGGAAGGCGCCTCCGA
GGAAGGCGCCTCCGAGAAAGACGCCTCCGTCGTCGGCGTTCCCGGGATCA
GCGGGATCCCCGGCACCTTTCCGTGTACGCCGGACAACGTATTTGGCATG
GAGCTGGAGCTGCAGCCGGAGCTGGAGCTGGAGACCGCCGGCCTTGCGGA
GGGGTCGGTGAGCCCCGACGCCGCCCACGATATCCGCTACGACACCGACA
CCGACACCTACTAGCATGTCGCGGGACAGCTCCCATGCGCCCACTATCCC
CACTACTCGCTCTGGGGCCCAGCCCGTGTCGATCTACATGCGCCGGCGGC
ACCCCCTCCGAGGAAGGCGCCTCCGAGGAAGGCGCCTCCGAGAAAGACGC
CTCCGTCGTCGGCGTTCCCGGGATCAGCGGGATCCCCGGCACCTTTCCGT
GTACGCCGGACAACGTATTTGGCATGGAGCTGGAGCTGCAGCCGGAGCTG
GAGCTGGAGACCGCCGGCCTTGCGGAGGGGTCGGTGAGCCCCGACGCCGC
CCACGATATCCGCTACGACACCGACACCGACACCTACTAGCATGTCGCGG
GACAGCTCCCATGCGCCCACTATCCCCACTACTC
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