mRNA_L-elsbetiae_contig1548.3858.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1548.3858.1 vs. uniprot
Match: D8LSX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX4_ECTSI) HSP 1 Score: 750 bits (1937), Expect = 2.530e-257 Identity = 421/654 (64.37%), Postives = 469/654 (71.71%), Query Frame = 2 Query: 2 AQEVGMRLLEMTAEVSREANQVFGYADDAASGGQQLGPWNKPGKVNSWRKWLELKSGGEHDPLPESAVTAFRIVQANWADPQKIAAAMNFTVFWSTARIEESKADPATPLLQVEVFHSALHPHVIKIMETFASSDAMLDHFHSSYEGYLEGVYDFRAAVNPTVQAYTPLDASLRPCLSATLDGGAMVPLVALGGAEDGAALPTSMVLQGLKLGLRHVVLEAGSSGVHEAVEGLTAALAFGVLKRHDLFVTMIVGESNSTVAGAGGIAATVRETLGSGSLDADGVEDDAGGTRLLDFVDALVLGRESGEFFDDDEKFLEMWDEARQAAASSPGQLSRFPTAPTSGTAPDKPAGDDDDRGAKDLPGSFDGSAYDSVAENFYVDYVADSPYDNVIDSDSRYDSSGXXXXXVVNKPFFIPDEDDAGLEDDADSPGLLARHLGVGGHGAPVADRLALLARLSLSSSASPRESGGGAGTRTVPKILPSLYFGDLRAGDAAATAEVMELCRDAAVQAFSLQYVGGEDGVEAGKGAADAADYEHEDVTADEVLAKWVMDLGGGVVWRPREMKDVARTLPLARYYLPPEWLTEIADRAGCPPEVWARTLSRLCPSEGTPSDDKIGAEVDETVAALMAPEEGQGEIYGEVDDDDDYDGLW-LDD 1960 A EVGMRLL+M A+VSRE N+VFGYADDA +GGQQLGPW K G VNSWRKWLEL G DPLPESAVT FR VQANWADP KIAAAMNFTVFWS AR+EES ADP TPL +VEV HSALHPHVIKI ETFASSDAMLDHFH +Y+GYL GV++FRAAVNPTVQAYTPL+ASLRPCLSATL GA+VPLVA+GGAEDG + PT +VL+GLKLG+RH VLE GSSGV EAVEGL AALAFGV+KR LFVTMIVGESNS VAG GIAA V ETL SG +D G+E D TRLLD VDALVL RESGE+FDDD FLEMWDEA QAAAS P + + P PT T D PA DD P+ S XXXXX HLGVGGHG+ VADRLALL S ++ A+ + G TVP+ LPSLYFGDLRAGD AAT +ELCR+ VQAFSL+ GG EA KGAA AADYEHEDVT DEVLAKWVM++ GGVVWRPRE+K+VAR LPLARYYLPPEW++EIADR GCPPE WARTLSRLCPSEGTPS++++GAEV+ETVA LM P++G+ E G D YDGLW +DD Sbjct: 91 ALEVGMRLLDMMADVSREPNEVFGYADDAVTGGQQLGPWKKSGSVNSWRKWLELGDG--EDPLPESAVTVFRTVQANWADPNKIAAAMNFTVFWSNARMEESMADPTTPLRRVEVLHSALHPHVIKIAETFASSDAMLDHFHRNYDGYLSGVFNFRAAVNPTVQAYTPLEASLRPCLSATLPTGAIVPLVAIGGAEDGVSPPTMIVLEGLKLGVRHFVLEVGSSGVKEAVEGLQAALAFGVVKRDHLFVTMIVGESNSAVAGGRGIAAAVSETLASGRVDDGGIETDGTATRLLDSVDALVLARESGEYFDDDRLFLEMWDEAHQAAASPPRESTGLPAVPTEQTGLDTPADDD--------------------------------PFG------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLGVGGHGSKVADRLALLVDQSPAAGAAAADVPG-----TVPRKLPSLYFGDLRAGDGAATTATIELCRERGVQAFSLECAGGRGAEEARKGAAAAADYEHEDVTDDEVLAKWVMEIDGGVVWRPREVKEVARVLPLARYYLPPEWISEIADRGGCPPEAWARTLSRLCPSEGTPSEEQLGAEVEETVAGLMTPDDGE-EADGV---GDSYDGLWGMDD 695
BLAST of mRNA_L-elsbetiae_contig1548.3858.1 vs. uniprot
Match: A0A6H5L373_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L373_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.600e-36 Identity = 114/238 (47.90%), Postives = 133/238 (55.88%), Query Frame = 2 Query: 926 FFDDDEKFLEMWDEARQAAASSPGQLSRFPTAPTSGTAPDKPAGDDD---DRGAKDLPGSFDGSAYDS---VAENFYVDYVADSPYDNVIDSDSRYDSSGXXXXXVVNKPFFIPDEDDAGLEDDADSPGLLARHLGVGGHGAPVADRLALLARLSLSSSASPRESGGGAGTRTVPKILPSLYFGDLRAGDAAATAEVMELCRDAAVQAFSLQYVGGEDGVEAGKGAADAADYEHEDVT 1621 +FDDD +FLEMWDEA AAAS P + + P APT T D P D+ DGS+ D V E D+ ADS + +DS S XXXXX G D+ DS L HLGVGGHG VADRLALL S ++ ++ G TVP+ LPSLYFGDLRAGD AAT +ELCR+ VQAFSL+Y GG EAGKGAA AADYEHEDV+ Sbjct: 4 YFDDDRQFLEMWDEAHHAAASLPRESTGLPAAPTEQTDLDTPVDDNPFXXXXXXXXXXXXXDGSSSDDNSVVGEGRPFDFPADS-----LTADSPAAESSXXXXXXXX-----------GSNDELDS--RLGSHLGVGGHGPKVADRLALLVDQSPAAGSAADVPG------TVPRKLPSLYFGDLRAGDGAATTATIELCRERGVQAFSLEYAGGRGAEEAGKGAAAAADYEHEDVS 217 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1548.3858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1548.3858.1 >prot_L-elsbetiae_contig1548.3858.1 ID=prot_L-elsbetiae_contig1548.3858.1|Name=mRNA_L-elsbetiae_contig1548.3858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=649bp MRLLEMTAEVSREANQVFGYADDAASGGQQLGPWNKPGKVNSWRKWLELKback to top mRNA from alignment at L-elsbetiae_contig1548:14705..24931- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1548.3858.1 ID=mRNA_L-elsbetiae_contig1548.3858.1|Name=mRNA_L-elsbetiae_contig1548.3858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10227bp|location=Sequence derived from alignment at L-elsbetiae_contig1548:14705..24931- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1548:14705..24931- >mRNA_L-elsbetiae_contig1548.3858.1 ID=mRNA_L-elsbetiae_contig1548.3858.1|Name=mRNA_L-elsbetiae_contig1548.3858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3894bp|location=Sequence derived from alignment at L-elsbetiae_contig1548:14705..24931- (Laminarionema elsbetiae ELsaHSoW15)back to top |