mRNA_L-elsbetiae_contig15471.3853.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15471.3853.1
Unique NamemRNA_L-elsbetiae_contig15471.3853.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15471.3853.1 vs. uniprot
Match: D8LHE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE2_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 4.470e-34
Identity = 81/112 (72.32%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:    4 QTGLEKEGSTAEGAVDGVPSPAEAGEEGEGXXXGTAQERGRKRDMYKIRSLLLQGQIAGLRERLKERELDVKELRVLTGGRGQSKLRELGAMLKDAREECEALQAREKSLAE 339
            Q G+    S AE  V G    A A E+ + XXX   Q RGRKRDMYKIRSLLLQGQIAGLRERLKEREL+VKELRVLTGGRGQSKLRELGAMLK+AR EC+AL+ REK LAE
Sbjct:   31 QAGVGGRVSVAEAGVSG--GEASATEQADKXXXXXXQARGRKRDMYKIRSLLLQGQIAGLRERLKERELEVKELRVLTGGRGQSKLRELGAMLKEARGECDALRTREKVLAE 140
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BLAST of mRNA_L-elsbetiae_contig15471.3853.1 vs. uniprot
Match: A0A6H5KCM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM1_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.810e-32
Identity = 70/76 (92.11%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:  112 QERGRKRDMYKIRSLLLQGQIAGLRERLKERELDVKELRVLTGGRGQSKLRELGAMLKDAREECEALQAREKSLAE 339
            QERGRKRDMYKIRSLLLQGQIAGLRERLKEREL+VKELRVLTGGRGQSKLRELGAMLK+AR EC+AL+AREK+LAE
Sbjct:   75 QERGRKRDMYKIRSLLLQGQIAGLRERLKERELEVKELRVLTGGRGQSKLRELGAMLKEARGECDALRAREKNLAE 150
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15471.3853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHE2_ECTSI4.470e-3472.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCM1_9PHAE1.810e-3292.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15471contigL-elsbetiae_contig15471:402..3903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size348
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15471.3853.1prot_L-elsbetiae_contig15471.3853.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15471 402..3903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.2663484-CDS-L-elsbetiae_contig15471:401..5661622815631.2663484-CDS-L-elsbetiae_contig15471:401..566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15471 402..566 +
1691683002.457501-CDS-L-elsbetiae_contig15471:401..5661691683002.457501-CDS-L-elsbetiae_contig15471:401..566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15471 402..566 +
1622815631.2796314-CDS-L-elsbetiae_contig15471:1987..20851622815631.2796314-CDS-L-elsbetiae_contig15471:1987..2085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15471 1988..2085 +
1691683002.4682317-CDS-L-elsbetiae_contig15471:1987..20851691683002.4682317-CDS-L-elsbetiae_contig15471:1987..2085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15471 1988..2085 +
1622815631.2891018-CDS-L-elsbetiae_contig15471:3818..39031622815631.2891018-CDS-L-elsbetiae_contig15471:3818..3903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15471 3819..3903 +
1691683002.4763021-CDS-L-elsbetiae_contig15471:3818..39031691683002.4763021-CDS-L-elsbetiae_contig15471:3818..3903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15471 3819..3903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15471.3853.1

>prot_L-elsbetiae_contig15471.3853.1 ID=prot_L-elsbetiae_contig15471.3853.1|Name=mRNA_L-elsbetiae_contig15471.3853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MQTGLEKEGSTAEGAVDGVPSPAEAGEEGEGGGGGTAQERGRKRDMYKIR
SLLLQGQIAGLRERLKERELDVKELRVLTGGRGQSKLRELGAMLKDAREE
CEALQAREKSLAEVG*
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mRNA from alignment at L-elsbetiae_contig15471:402..3903+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15471.3853.1 ID=mRNA_L-elsbetiae_contig15471.3853.1|Name=mRNA_L-elsbetiae_contig15471.3853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3502bp|location=Sequence derived from alignment at L-elsbetiae_contig15471:402..3903+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGACGGGGCTGGAAAAGGAGGGGTCTACTGCCGAGGGTGCTGTCGA
CGGGGTGCCGTCGCCGGCGGAGGCGGGGGAGGAGGGGGAGGGGGGGGGTG
GGGGCACCGCTCAGGAACGCGGGAGGAAGAGGGACATGTACAAGATCCGT
TCCTTGCTGCTTCAGGTGGGTGGGCGCTTGCTTGCTTTACCGTAGGTGAT
ACAAGATACCACACCCCCTGGATAGATTTTCAAAGCTCGATTCCTCCTCC
CCAGCAAGAAGAGCGCCAGGGCCGAAAGGGGGTGCACTGGAAAGATCTGA
GCGAGGGCCGTCCGAAAATGTGTCGTTCGGTGCTGGCACCTTCTTCGTTA
CGGAGTAATGGAGCTCTACAACTCGGGTCGGCCCAGGGGGTGTGGTGATA
TCTTGTGTCACCTACGGTAGTGTGGTCGCCGCCGCCGCCGTCTAGATTTG
GTTGCGTGCGGCTCGTGGGTGGTGTGTTGTTTATTGTCCTTTTATGTTTT
TTTATTTGTTTGCTCCCATCATTGGCATATTTATTCGTCGTCTGCCCCAC
TGGCCCCCTTCCTCCGCTACGACTAGCTGGACGACCCAAACGGGGTCACG
CAGGAGGGGGGGGGGGGGGGGGGGGGGGCCCTCCCGCGTAAGTAAGTCGC
GCGGCGGTTTCCGCTGTTCAGGGTTGGGGTTGCTCCGTGTCGTTTCTACC
GAGAGCAATGGTTTCTCTGCCCTACCGTTACCTTGCTGACAGTCCCGCGG
ACAGTCCCGTTGTTGGTGCCCGCGTAAGTACGTCGCGCTGCGGTTTCGCT
GTTGAGGGTTGGCCGACGACCGCTTGGTGCCATGAGCGTACGACGGCTGA
TTGGTGCCCATGATCGTCTCGCACGATGATGTTGATTGGGCCCTCTGGAC
CCTCCCTCGCTTCAGAGAGGATTTCAGCGCTGATGGTGTTGATTGAGCCT
CCTCGGGCCCTTCTTCAGGGAGGATTTCAACGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGTCTCTGTCATCCACAATGGCGTCTGGAAACACTCTGCGTATAC
AGTACTTACTAGACGTAGTTCAGAGACCTGTGGCCTTTCAGCGCTGCTGC
TGCTGCTGCTGCTGCTGCCATCCATGATGGCGGCTGGAAACATGCGGTAG
TACCCTCAAAACAGATCAAGTGCTCTTCGAGAGGATTTCAACGCTGCTGC
TGCTGCTGCTGCTGTCTCCGTCATCCATGATGGCGGCTGAAAATATTCTG
CGTACAATACACAGTACATAGATGTACACATGTTAAAAAAAGGGCACGTG
CTCTTGCCGTCTCATGGCGGCTGGAAACATCTGCGTACGTGAATATGTAG
ATACGTTAAAAAATATGAAGGGCAAGTGCTCTTTGCATCCTCTCAGGTTC
CCAGCGCCTGCATGGTTTTGCCTTAATATAGATGAGAGTTTATTTTGTGT
ATGCATCCACGTACGCGAAGCACTTGACGGCGCCGCATCACTTTCGCCCA
TCCGCGACACACGTCCCCTCCCCCCCCTCCTCACAGGGCCAGATTGCGGG
GCTCCGCGAAAGGCTCAAGGAACGCGAGCTGGACGTGAAGGAGCTCAGGG
TGCTCACGGGTGGCCGAGGCCAGTCTAAGCTGAGGTAAGATTTGGGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTT
GCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTGCTGTTG
TTGCTGTTGTTGCTGTTGTTGCTGTTGTTGCTGTTGTTGTTGTTGTTGTC
TTGACGCCAAAAAATCGTTCCGAGGTAACATCACAGGCAGGCACCGCAAG
AGGGGGTCCATCCCCCCCCCCCATCCTGTGTGACCCCGGTTGGGTCGTCT
AGCTAAAAAGTCGCTGTGGAGGAAGGGGGCCAGTGGGGCAGACGACGAGT
AAATAAGCCAACCATGGGAAAAAGAAAAAAAACTTGGAAGGTAAATACTT
ATTTTCTAATTTACCCGGTACATACCTCCCTCCCTCTGTCCGTGCTATAT
TCCAGCACTAGATGCAGTCAATTCCCGTGGTCACAGGCTAAATACATGCA
TATATAACTTACACCAAAAGAATGGTGAAATGTACGAACATAAGATGGAC
CCGAAGGGTTAGTAAGCAAAGCGGTAAAAGTTAGTAAAAGACGAATAGTA
CCGTAGGTGACATAAGATAAGACACCCCCTGGACCGATTTTCAAAGGTCA
AGTACTCCACAGCAAGCAGAGCGTCAGTCCCGAAAAGAGCGGCGCTGGAA
AGACCTCGTCGAGAGCTGTCCGAAAATGTGGCGTTTGTGGTTAGAATCGT
ATTCGTTGCGGAGTAACCAAGCTTTCAAAATCGGTCCAGGGGGTATCTTA
TCTTATGTCATAGTAATATACGGTCCCGTGCGGCTACTAAGCGTCTCCAC
TAAGAAGTACTCCGTACGTGTGTGAGGACGCACAGTAGTAGTGCACACCA
AAGGCGCATTTTATTTTTATTTTCTAAGCCCCGATGGCCGTCCGTGGCTT
TGAGTCTTCTTTGTTACGCATGGCACCCACCCGCTCGGTAGTTTGGAAAT
GGAAATAATAAAATAGTACCATACAATACTCCTGCATATGTTTTGAACCT
TTGTAGTTCGAACCCTGCCCCCCTCCTCGACTTTTGTTTTTACGCGGCCC
CCGCTGTGCATTCCAAGGAGGGGTTTTGACTTGTAAGCAGTTAGATGACG
ACGGCTGAACCCTTCTCGCGACAAAAATCGTAGGCAAGCACCGCAGACGG
GGGGGGGGGCGGGGGGGGCCTTGGGGAAAGGAGGGTACCCTTCTGTGTGA
CCGCGGCTGGTTCAGTACTCTGGCAAGATGCCCTCGTGGCGAAGGAACCC
ATCGAGCACTGGAAATAAGTGTAAAGAAGAACATAAAATTGGTACTCTGG
CAAGATGCCCTCGTGACAGGGAGCAGCCCATCGAGCACTGGAAATAAATG
TGAAGAAGAACATGAGATTGGTACTCTGGCAAGATGTCCTCGTGACAGGG
AGCAGCCCATCGAGCACTGGAAATAAATGTGAAGGATAACAATAAAAAAC
AAAAAAATCGTGTTTGTGTCTTTTGTGTGTTTGTGTTTGTGTTTTATAAA
ATAAAACAAAGAATCAAAGATGGAACCTAACCCATACTATTCCTATACAG
AGACGTGATATTTGGCGAAGCGAGCGAAAAAACAACCTAAGTTTGTGTTT
TTGTCTTGCCTGTGCAGGGAGCTAGGGGCGATGCTGAAGGACGCTAGGGA
GGAGTGCGAAGCGCTCCAGGCAAGGGAGAAGTCTCTCGCGGAGGTAGGCT
AG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15471:402..3903+

>mRNA_L-elsbetiae_contig15471.3853.1 ID=mRNA_L-elsbetiae_contig15471.3853.1|Name=mRNA_L-elsbetiae_contig15471.3853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig15471:402..3903+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGACGGGGCTGGAAAAGGAGGGGTCTACTGCCGAGGGTGCTGTCGA
CGGGGTGCCGTCGCCGGCGGAGGCGGGGGAGGAGGGGGAGGGGGGGGGTG
GGGGCACCGCTCAGGAACGCGGGAGGAAGAGGGACATGTACAAGATCCGT
TCCTTGCTGCTTCAGATGCAGACGGGGCTGGAAAAGGAGGGGTCTACTGC
CGAGGGTGCTGTCGACGGGGTGCCGTCGCCGGCGGAGGCGGGGGAGGAGG
GGGAGGGGGGGGGTGGGGGCACCGCTCAGGAACGCGGGAGGAAGAGGGAC
ATGTACAAGATCCGTTCCTTGCTGCTTCAGGGCCAGATTGCGGGGCTCCG
CGAAAGGCTCAAGGAACGCGAGCTGGACGTGAAGGAGCTCAGGGTGCTCA
CGGGTGGCCGAGGCCAGTCTAAGCTGAGGGCCAGATTGCGGGGCTCCGCG
AAAGGCTCAAGGAACGCGAGCTGGACGTGAAGGAGCTCAGGGTGCTCACG
GGTGGCCGAGGCCAGTCTAAGCTGAGGGAGCTAGGGGCGATGCTGAAGGA
CGCTAGGGAGGAGTGCGAAGCGCTCCAGGCAAGGGAGAAGTCTCTCGCGG
AGGTAGGCTAGGGAGCTAGGGGCGATGCTGAAGGACGCTAGGGAGGAGTG
CGAAGCGCTCCAGGCAAGGGAGAAGTCTCTCGCGGAGGTAGGCTAG
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