mRNA_L-elsbetiae_contig15467.3851.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15467.3851.1
Unique NamemRNA_L-elsbetiae_contig15467.3851.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15467.3851.1 vs. uniprot
Match: A0A6H5KJZ9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ9_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 1.540e-89
Identity = 121/153 (79.08%), Postives = 139/153 (90.85%), Query Frame = 1 
Query:    4 SHTWCLPNAAQQNFSGVIIKEDDGLMPQGKWEGRHWWYHDEITSGFHMVVTIGGDTYGFWDLGIVGAAGNTEYVAAYKGDQCLFYQEEVQPGSSPFDEDVTCRGSAWAGNVTFQEEIEFGYGTKAERWAGTILDIDDGSAKYGGLPPGTEVTV 462
            S +WCLPNAA Q+F GV++KEDDG+MPQG+WEG HWWYHDEIT+GFHM VTIGGDTYGFWDLGI+GAAGNTEYVAAYKGD+CLFY+E+VQPGS+PFDEDVTCRGSAWAG+VT +E++EFGYG KAERWAGTI+D +D    YGGLPPGTE  V
Sbjct:  176 SDSWCLPNAAHQSFLGVVLKEDDGVMPQGEWEGEHWWYHDEITNGFHMAVTIGGDTYGFWDLGIIGAAGNTEYVAAYKGDRCLFYEEKVQPGSTPFDEDVTCRGSAWAGSVTLKEQVEFGYGMKAERWAGTIVDDED--TGYGGLPPGTESLV 326
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BLAST of mRNA_L-elsbetiae_contig15467.3851.1 vs. uniprot
Match: D8LI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI79_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 4.630e-76
Identity = 106/128 (82.81%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:   79 MPQGKWEGRHWWYHDEITSGFHMVVTIGGDTYGFWDLGIVGAAGNTEYVAAYKGDQCLFYQEEVQPGSSPFDEDVTCRGSAWAGNVTFQEEIEFGYGTKAERWAGTILDIDDGSAKYGGLPPGTEVTV 462
            MPQG+WEG HWWYHDEIT+GFHM VTIGGDTYGFWDLGI+GAAGNTEYVAAYKGD+CLFY+E+VQPGS+PFDEDVTCRGSAWAGNVT +E++EFGYGTKAERWAGTI+D +D    YGGLPPGTE  V
Sbjct:    1 MPQGEWEGEHWWYHDEITNGFHMAVTIGGDTYGFWDLGIIGAAGNTEYVAAYKGDRCLFYEEKVQPGSTPFDEDVTCRGSAWAGNVTLKEQVEFGYGTKAERWAGTIVDDED--TGYGGLPPGTESLV 126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15467.3851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJZ9_9PHAE1.540e-8979.08Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LI79_ECTSI4.630e-7682.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15467contigL-elsbetiae_contig15467:1431..3649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size486
Cds size486
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15467.3851.1prot_L-elsbetiae_contig15467.3851.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15467 1431..3649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.0196564-CDS-L-elsbetiae_contig15467:1430..15401622815631.0196564-CDS-L-elsbetiae_contig15467:1430..1540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15467 1431..1540 +
1691683002.2875228-CDS-L-elsbetiae_contig15467:1430..15401691683002.2875228-CDS-L-elsbetiae_contig15467:1430..1540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15467 1431..1540 +
1622815631.0338278-CDS-L-elsbetiae_contig15467:2521..26191622815631.0338278-CDS-L-elsbetiae_contig15467:2521..2619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15467 2522..2619 +
1691683002.2984085-CDS-L-elsbetiae_contig15467:2521..26191691683002.2984085-CDS-L-elsbetiae_contig15467:2521..2619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15467 2522..2619 +
1622815631.0448272-CDS-L-elsbetiae_contig15467:2997..31341622815631.0448272-CDS-L-elsbetiae_contig15467:2997..3134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15467 2998..3134 +
1691683002.3090394-CDS-L-elsbetiae_contig15467:2997..31341691683002.3090394-CDS-L-elsbetiae_contig15467:2997..3134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15467 2998..3134 +
1622815631.0553954-CDS-L-elsbetiae_contig15467:3508..36491622815631.0553954-CDS-L-elsbetiae_contig15467:3508..3649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15467 3509..3649 +
1691683002.3194964-CDS-L-elsbetiae_contig15467:3508..36491691683002.3194964-CDS-L-elsbetiae_contig15467:3508..3649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15467 3509..3649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15467.3851.1

>prot_L-elsbetiae_contig15467.3851.1 ID=prot_L-elsbetiae_contig15467.3851.1|Name=mRNA_L-elsbetiae_contig15467.3851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
KSHTWCLPNAAQQNFSGVIIKEDDGLMPQGKWEGRHWWYHDEITSGFHMV
VTIGGDTYGFWDLGIVGAAGNTEYVAAYKGDQCLFYQEEVQPGSSPFDED
VTCRGSAWAGNVTFQEEIEFGYGTKAERWAGTILDIDDGSAKYGGLPPGT
EVTVMVLVMER*
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mRNA from alignment at L-elsbetiae_contig15467:1431..3649+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15467.3851.1 ID=mRNA_L-elsbetiae_contig15467.3851.1|Name=mRNA_L-elsbetiae_contig15467.3851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2219bp|location=Sequence derived from alignment at L-elsbetiae_contig15467:1431..3649+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAGCCACACCTGGTGTCTTCCGAACGCGGCACAGCAAAACTTCTCGGG
TGTGATTATCAAGGAGGACGACGGTCTAATGCCGCAGGGGAAGTGGGAGG
GGCGACACTGGTAAGGGGAAGGGGCCAAAGGCCGGGGGGGGGGGGGGGGG
GGTGGGGGCCCCCCCGGGGGGGTATATACCCCGGTGGGTTTTGGTGGGGN
NNNNNNNATGGGGGGGGGGGGGGGGAGGGAGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGCTTAGGTGCACCGCCGTGATGGTATATA
CTCTGCTGGTTTGACTTGGGGCCTTCTTCTCTGGCTTCATGGGTGTGTGC
ATGTATGTATGTTCGTGTCTGGTAGGTTTGGGAGAGTCCGTGTCTGAGCC
CTCTCTCTCTCTCTCTCTTGTAGTGCGCGAGAGATTTGAGAGGTGTCATC
TCCATGACACCACGTGTGTAGGTAGCATTAGCAGCACTAACAGACTTGTT
TTGGAAAAGTGCACGAAGGGCTATTGTTCGTACGTTTGTGCTTGTGGTCG
TGTGTGCCTATGTCTGTATATGTTCTTGTTTCTGTGCGTGGTTGCGTGCA
CCCACCCTGGCTGGTTGATATAGACCCCGCTCGATGGACGTGCTCAGCTC
CGGCTTGACTTCTGTATCCTTATCTAGGGGTGCGAGCGTCGATCGGCGTG
CAATTGGAATGAAGACTTCGACCAACCATGTACACGCCATGCTATGCCCT
GCATCATGAATGCGTGCCCCTCCCAATCCCTGCCTGTCGATAGATGGTGG
CATTGTGGGGTCAAAAACATCGAGGCGGGTACATACATACACAATAAAGA
TGTGCGAGAAGCCTTTTGTGTTGGATAACACAGCTGAAACTTGAACAACT
CCGACATGTTTGTTTTCCTCGAGGAGGAGAGGTAGAAACTGGGCCCCATT
TGACGGGCAAACAATGGTTGAGTCTCCCCCACCTTAGCAACGGTTGCGTC
CCCCCCCTCCCCCGCTGCTGTTCTCCGCCTCTCAATCGCAGGTGGTACCA
CGACGAAATCACTAGCGGATTTCATATGGTAGTCACCATCGGAGGCGATA
CATACGGCTTCTGGGACCTCGGCATCGTGGGCGCTGCGGGTGAGACGATA
TACAGTTGTGCGTTTTGTTTTTTTTGTTGTACTCTCTTTAGTTATCAGAA
AAAAAACGTCTCGACGGTGTTTGGGCGTGTTCGCTGCTTCTTTCCAGGAG
GGCGTTTTCTCGCGCCGATGCAACAAACTCGTCGTCGCGATGAAAGCTTG
GAGCTTGCTTTTGGACCAGCTGACGCGCCCACCTCCCCCCCCCCCCGCAA
TCTCTCTGTCTTTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGCCTACCCATGTGTTCTCTCCCGCCGC
CGCCATCAACCCTTCAAACCTTCAACGATGGAACGGACGATTCCACCACG
ACAACTGCACGTACCAGGCAACACGGAGTACGTCGCGGCCTACAAGGGGG
ACCAGTGCCTGTTTTATCAGGAGGAGGTGCAGCCGGGCTCGTCGCCGTTC
GACGAGGATGTCACCTGCAGGGGGTCAGCTTGGGCGGGGAACGTTACATT
CCAGGTGCGGCACGGCTTAACACGCGCTCTTATCTCCCTTATCTCTAGAG
GTGCTTTGTGTCGTACACATTGAGTATGTACTTCTGACGTAGAGTATGTA
AGACCGGTCTATGCTGATGTTTTGCTGGATCCCTAGGCATGGCTCAGCGG
ATATGCTTTTTGCGGTTCGCAGACAAAGCCAGTGAGGGGAACACGAAATA
GCAACCTTTTTATTTCAGTTCAGTTTGGGTTGGCTTGGGTTTAGTTCAAG
TTTTCAGGTTTGTGGCTTGCGGTTGTTGCTCCACTTTTGTTCACTGGTGC
TGTTGCTGTTGTTGTTGTTGTTGTTGCTTTCTGCTGCTGGTGCCGCCGCC
GCTGCTTCTGCTGCTGCTATGGTTGCAGGAAGAGATAGAGTTCGGCTACG
GCACGAAGGCGGAGCGCTGGGCGGGGACGATACTGGATATCGATGACGGG
AGCGCGAAGTATGGGGGGCTGCCGCCAGGCACAGAGGTGACGGTGATGGT
ACTGGTGATGGAAAGATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15467:1431..3649+

>mRNA_L-elsbetiae_contig15467.3851.1 ID=mRNA_L-elsbetiae_contig15467.3851.1|Name=mRNA_L-elsbetiae_contig15467.3851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig15467:1431..3649+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAGCCACACCTGGTGTCTTCCGAACGCGGCACAGCAAAACTTCTCGGG
TGTGATTATCAAGGAGGACGACGGTCTAATGCCGCAGGGGAAGTGGGAGG
GGCGACACTGAAAAGCCACACCTGGTGTCTTCCGAACGCGGCACAGCAAA
ACTTCTCGGGTGTGATTATCAAGGAGGACGACGGTCTAATGCCGCAGGGG
AAGTGGGAGGGGCGACACTGGTGGTACCACGACGAAATCACTAGCGGATT
TCATATGGTAGTCACCATCGGAGGCGATACATACGGCTTCTGGGACCTCG
GCATCGTGGGCGCTGCGGGTGGTACCACGACGAAATCACTAGCGGATTTC
ATATGGTAGTCACCATCGGAGGCGATACATACGGCTTCTGGGACCTCGGC
ATCGTGGGCGCTGCGGGCAACACGGAGTACGTCGCGGCCTACAAGGGGGA
CCAGTGCCTGTTTTATCAGGAGGAGGTGCAGCCGGGCTCGTCGCCGTTCG
ACGAGGATGTCACCTGCAGGGGGTCAGCTTGGGCGGGGAACGTTACATTC
CAGGCAACACGGAGTACGTCGCGGCCTACAAGGGGGACCAGTGCCTGTTT
TATCAGGAGGAGGTGCAGCCGGGCTCGTCGCCGTTCGACGAGGATGTCAC
CTGCAGGGGGTCAGCTTGGGCGGGGAACGTTACATTCCAGGAAGAGATAG
AGTTCGGCTACGGCACGAAGGCGGAGCGCTGGGCGGGGACGATACTGGAT
ATCGATGACGGGAGCGCGAAGTATGGGGGGCTGCCGCCAGGCACAGAGGT
GACGGTGATGGTACTGGTGATGGAAAGATAAGAAGAGATAGAGTTCGGCT
ACGGCACGAAGGCGGAGCGCTGGGCGGGGACGATACTGGATATCGATGAC
GGGAGCGCGAAGTATGGGGGGCTGCCGCCAGGCACAGAGGTGACGGTGAT
GGTACTGGTGATGGAAAGATAA
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