mRNA_L-elsbetiae_contig10352.384.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10352.384.1
Unique NamemRNA_L-elsbetiae_contig10352.384.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10352.384.1 vs. uniprot
Match: A0A6H5KCT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT0_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 3.720e-47
Identity = 129/257 (50.19%), Postives = 153/257 (59.53%), Query Frame = 1 
Query:    1 QLLQPIFRQERTLIAAVRPQSLRAMAVGGGPSRPIMVFASTRPSDGSPVLTVLDTDTAIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGSLS---------RDGLG------------EVELSTRCCSKSVFAASPHAVFINPANVKAFVCGGGGXXXXXXXXXXXXXXGLPAASQGPQRTPSPSPGGGGRVHLKFSMVVAEASLTEAGRLTLRAWEQTHVGDAHRVAAEAERLGLLAFCDPYSE 708
            Q L P+  ++R LI  VRPQSLRAMAVGGG S P+M+ AS RPSDGSPVL VLDTD A+AA XXXXXXXXXXXXXXXXX                     G++          +DG G            EVEL+TRCCSKSVF A PHAVF++PA VKAFVC                   +P +S       +PSP    ++HLKF +++AEASL E GR  LRAWEQ+H G AH+VA +AE LGLL +CDP  E
Sbjct:  516 QALPPLVTRQRPLIPGVRPQSLRAMAVGGGRSLPVMILASFRPSDGSPVLIVLDTDAALAAAXXXXXXXXXXXXXXXXXGFATKGESGKNPEPLWSSSTGGAVDGRGGRGGGLQDGGGGVVISGERGDEHEVELATRCCSKSVFPARPHAVFVDPAEVKAFVCR---RRRRRWRCGDDCVVVVPGSSALAPPLSAPSPPDKDKLHLKFPVILAEASLDETGRPRLRAWEQSHAGLAHKVAVDAEVLGLLGYCDPSEE 769
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BLAST of mRNA_L-elsbetiae_contig10352.384.1 vs. uniprot
Match: D7FN13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN13_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 3.060e-29
Identity = 67/127 (52.76%), Postives = 83/127 (65.35%), Query Frame = 1 
Query:  328 EVELSTRCCSKSVFAASPHAVFINPANVKAFVCGGGGXXXXXXXXXXXXXXGLPAASQGPQRTPSPSPGGGGRVHLKFSMVVAEASLTEAGRLTLRAWEQTHVGDAHRVAAEAERLGLLAFCDPYSE 708
            EVEL+TRCCSKSVF A PHAVF++PA +KAFVC                   +P +S      P+PSP    ++HLKF +++AEASL E GR  LRAWEQ+H G AH+VA +AE LGLLA+CDP  E
Sbjct:  500 EVELATRCCSKSVFPARPHAVFVDPAELKAFVCR---RRRRRWGYGDDGVVVVPGSSALAPPFPAPSPPDKDKLHLKFPVILAEASLDETGRPRLRAWEQSHAGFAHKVAVDAEVLGLLAYCDPSEE 623
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10352.384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCT0_9PHAE3.720e-4750.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN13_ECTSI3.060e-2952.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10352contigL-elsbetiae_contig10352:468..3218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size708
Cds size708
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815262.754208-CDS-L-elsbetiae_contig10352:467..9691622815262.754208-CDS-L-elsbetiae_contig10352:467..969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10352 468..969 +
1691682803.9663086-CDS-L-elsbetiae_contig10352:467..9691691682803.9663086-CDS-L-elsbetiae_contig10352:467..969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10352 468..969 +
1622815262.7677271-CDS-L-elsbetiae_contig10352:3012..32181622815262.7677271-CDS-L-elsbetiae_contig10352:3012..3218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10352 3013..3218 +
1691682803.9746914-CDS-L-elsbetiae_contig10352:3012..32181691682803.9746914-CDS-L-elsbetiae_contig10352:3012..3218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10352 3013..3218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10352.384.1prot_L-elsbetiae_contig10352.384.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10352 468..3218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10352.384.1

>prot_L-elsbetiae_contig10352.384.1 ID=prot_L-elsbetiae_contig10352.384.1|Name=mRNA_L-elsbetiae_contig10352.384.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
QLLQPIFRQERTLIAAVRPQSLRAMAVGGGPSRPIMVFASTRPSDGSPVL
TVLDTDTAIAAAAAAAAAAAAAVTGTGSAGAGGASGAPYSGFSGGGGGED
GSLSRDGLGEVELSTRCCSKSVFAASPHAVFINPANVKAFVCGGGGGGGG
RGGGRGGEGGGLPAASQGPQRTPSPSPGGGGRVHLKFSMVVAEASLTEAG
RLTLRAWEQTHVGDAHRVAAEAERLGLLAFCDPYSE
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mRNA from alignment at L-elsbetiae_contig10352:468..3218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10352.384.1 ID=mRNA_L-elsbetiae_contig10352.384.1|Name=mRNA_L-elsbetiae_contig10352.384.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2751bp|location=Sequence derived from alignment at L-elsbetiae_contig10352:468..3218+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTTCTGCAGCCGATCTTCCGGCAAGAGAGGACCCTCATCGCCGCTGT
CCGGCCCCAGAGTCTCCGAGCAATGGCGGTCGGCGGCGGCCCCTCCCGCC
CCATCATGGTCTTCGCGTCCACCCGGCCGTCGGACGGGAGTCCTGTTCTC
ACAGTCCTGGACACCGACACCGCCATCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCTGCTGCCGCAGTCACCGGCACCGGCTCGGCAGGGGCGGGGGGGG
CGTCTGGGGCCCCGTACTCGGGTTTTTCGGGCGGCGGCGGCGGCGAAGAT
GGAAGCTTGTCGCGGGACGGGCTGGGGGAGGTGGAGCTGTCCACGAGGTG
CTGCAGCAAGAGCGTGTTCGCGGCTAGCCCGCACGCCGTGTTCATCAACC
CCGCGAATGTTAAGGCGTTTGTTTGCGGCGGCGGCGGCGGCGGCGGTGGC
CGTGGTGGTGGTCGCGGCGGAGAGGGTGGAGGTCTCCCTGCTGCCTCGCA
AGGTTTGTTTTGGAGGCTGGTAAATCCACTCTCTCTCTCTCGCTACTCTG
ATGTGTCGCGTCAATCGTGCTACAGCTCCAGATCCTCTACAACCGATGCG
GTGCTCCTCGACAGGCCACCTGTCCTCTGAGTTGCAACCCTTCTCTTGGC
TGTCTTAGAGGTAAAACTAGACTGCACTCTCGGTCGGGGATGATAAGGTT
CCATCCCCTTCTTTTTCCACGAATTCGAAAACGCCTTCCACAAACCACGC
TTTCCTTAAGAACGCTACCTTTTTGGAGGCTGGTTTTTCTTCAGGGGTAT
GCCAGCACCCACACGGCGACACGGTATTCCCGCCCACCCCGGTGGCCTGC
CTGCGTCCCGGCACCCGTAGTCTGTAGCAGCGTCGGTTTACACGGGTGAA
TACATGCCGAGGTGCATGCTACAATAGGGGTGTTCCGGCGCTGTTGTTTG
GCGCTGGGTTAGTAACACCAGCACAACTTTTTAGGCGCACCTTTTGCTGT
GACATCAGCGACGAGTCCCTTTTTCACGGAGCCCCTTCCTTGTCGGGGGT
GACGTAAATAAACAGTGTGCCACCACCACCGCGGTCCGTGTCGTGAGTCC
CGCCCACCCACCCAGTTCACGAAATCGTGCATCCTGAATCGCTACAATAT
CGACGGGGACTACCGTAAACTACGGAGTTTTCCCCCCGGAGGAGGAATTT
TGTTTTTTTGCTGAAATCACCTCCCCCCCCCCGGGGGGAAATTGACGTAC
CGGGGGGGGATGGGTTGTTTTATTTTTTTCCTATGCTACTCCGGGGGGTG
TCTTGGGGCATATTCTGCGGTGATGCGTTGTACCGTGACTCGAGGGATTA
CAAATAATACAACAACACAAAGGAAAAAACAACCGTTTGACCTAGAAACA
ACGCCGAATGCCAGTTGCCGCGGTATACAACACATATCTCGCTCGAAGCG
CAGCGTGTGCAGATTAATTTTCTGTACCCTATCATGCTTTCTGTGCTTCG
CGATACATATAAAAAAAAACGACTCAAGAACAAGCGCAAATGCTTTCCCC
CCGGGGGGACCTCGTGGGAAGAATTGGTACATACCCCGGGGGGAAATTGA
CGTACCCCGGGGGAGTTTTTTTTGGGGGGGGCGAAAACGATCTACCCCGG
GGGTAAATCAAAGAATGCACGCTTGCAGGCCGAAAAGGTGATGGGGGGGA
TCCCAGGGGGGGGAAACGTCACTGTATGGAATACCGTTTGAACCCCATAT
CGAGTCCTTGCTCTAGTGTGGGGTAGGTTCCATCTTTGATTCATTGTTTA
TTTTTAAAACTCCGTAGTTTGCGGTATTTTGGCTTTGTTTTTTGTCATCT
TTCCCGCCAAGATTCGATCACCAGGCCGATGACAAGACGCGCCGCCCGAC
TCTCCCAGTCTTTTGTTTGTGCCACCGCAAACACCATGTTCTGGCCTCTC
CTGACCCCCTCTTTCGTCTTGTCGACTCTCCCGTCAGTCTTTTGTTTGTG
CCACCGCAACACCATCTTCTCGCCTCTCCTGACCCCCTCGTTCGTTTCTT
GTCGGTCGAAGCGATGATCATGATTGCATACGGCTGCAGAACAAGAATGC
TGCCGCAAGAATACAGGCGTCGGCACCCTATTTGTTTTTCTTCCGCGGCG
GCGTCGAGTGGTATGTGCCTTGTTTTGTGACCGCGGCCCCCCCCCAAGGA
TGTTTTTGGGCTAGAGAGCTAATGTGAGAGAAGCGACAACAACAACATCC
CATCTGTCTTCGCTGTTGTCTGTCTCTCTCTCGCTGTTTTTCTCTCTCGC
TGTCTATCTCTCGCTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTGTCCATCTCTCTTCTCTCTCTCT
CTCTCTCTTGTCTCTCTCTCTCTCTGCCCGCTCTCTCCCCCTCTGCTCCC
CCCCTCTTCTCCCTCTCTCGCTGACGCCCTGTCGCTCTCCCTCTCTCCCC
GCCCCCCCTGACGCCCCATCGGCCCCCTTTTCTGACTTGAAGCAGGGCCA
CAGCGGACACCTTCTCCGTCCCCGGGCGGCGGCGGAAGAGTGCACCTCAA
GTTTTCCATGGTGGTTGCGGAGGCCTCTCTCACCGAGGCCGGGAGGCTGA
CGCTGCGGGCGTGGGAGCAGACGCACGTTGGCGACGCGCACCGGGTGGCG
GCGGAGGCAGAGCGGCTGGGCCTTCTGGCCTTCTGCGACCCTTATTCGGA
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10352:468..3218+

>mRNA_L-elsbetiae_contig10352.384.1 ID=mRNA_L-elsbetiae_contig10352.384.1|Name=mRNA_L-elsbetiae_contig10352.384.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig10352:468..3218+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTTCTGCAGCCGATCTTCCGGCAAGAGAGGACCCTCATCGCCGCTGT
CCGGCCCCAGAGTCTCCGAGCAATGGCGGTCGGCGGCGGCCCCTCCCGCC
CCATCATGGTCTTCGCGTCCACCCGGCCGTCGGACGGGAGTCCTGTTCTC
ACAGTCCTGGACACCGACACCGCCATCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCTGCTGCCGCAGTCACCGGCACCGGCTCGGCAGGGGCGGGGGGGG
CGTCTGGGGCCCCGTACTCGGGTTTTTCGGGCGGCGGCGGCGGCGAAGAT
GGAAGCTTGTCGCGGGACGGGCTGGGGGAGGTGGAGCTGTCCACGAGGTG
CTGCAGCAAGAGCGTGTTCGCGGCTAGCCCGCACGCCGTGTTCATCAACC
CCGCGAATGTTAAGGCGTTTGTTTGCGGCGGCGGCGGCGGCGGCGGTGGC
CGTGGTGGTGGTCGCGGCGGAGAGGGTGGAGGTCTCCCTGCTGCCTCGCA
AGCAGCTTCTGCAGCCGATCTTCCGGCAAGAGAGGACCCTCATCGCCGCT
GTCCGGCCCCAGAGTCTCCGAGCAATGGCGGTCGGCGGCGGCCCCTCCCG
CCCCATCATGGTCTTCGCGTCCACCCGGCCGTCGGACGGGAGTCCTGTTC
TCACAGTCCTGGACACCGACACCGCCATCGCCGCCGCCGCCGCCGCCGCC
GCCGCCGCTGCTGCCGCAGTCACCGGCACCGGCTCGGCAGGGGCGGGGGG
GGCGTCTGGGGCCCCGTACTCGGGTTTTTCGGGCGGCGGCGGCGGCGAAG
ATGGAAGCTTGTCGCGGGACGGGCTGGGGGAGGTGGAGCTGTCCACGAGG
TGCTGCAGCAAGAGCGTGTTCGCGGCTAGCCCGCACGCCGTGTTCATCAA
CCCCGCGAATGTTAAGGCGTTTGTTTGCGGCGGCGGCGGCGGCGGCGGTG
GCCGTGGTGGTGGTCGCGGCGGAGAGGGTGGAGGTCTCCCTGCTGCCTCG
CAAGGGCCACAGCGGACACCTTCTCCGTCCCCGGGCGGCGGCGGAAGAGT
GCACCTCAAGTTTTCCATGGTGGTTGCGGAGGCCTCTCTCACCGAGGCCG
GGAGGCTGACGCTGCGGGCGTGGGAGCAGACGCACGTTGGCGACGCGCAC
CGGGTGGCGGCGGAGGCAGAGCGGCTGGGCCTTCTGGCCTTCTGCGACCC
TTATTCGGAGGGCCACAGCGGACACCTTCTCCGTCCCCGGGCGGCGGCGG
AAGAGTGCACCTCAAGTTTTCCATGGTGGTTGCGGAGGCCTCTCTCACCG
AGGCCGGGAGGCTGACGCTGCGGGCGTGGGAGCAGACGCACGTTGGCGAC
GCGCACCGGGTGGCGGCGGAGGCAGAGCGGCTGGGCCTTCTGGCCTTCTG
CGACCCTTATTCGGAG
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